TCONS_00012704-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012704-protein
Unique NameTCONS_00012704-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length292

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012704-protein ID=TCONS_00012704-protein|Name=TCONS_00012704-protein|organism=Clytia hemisphaerica|type=polypeptide|length=292bp
MGEKKVKEQLSILQYSFAGALSGVVSRFLGQPLDVIKIRLQLQNKEAGQL
KYTGVLNTCKLIFKEEGLFGFWKGHVPAQVLSIFYGSVQFASFERSRSFL
NPYLCQRKELNDFLSGGNAGIVSSLFVHPLDLLRTRAVSNQAKQSLSLHI
LIKSTAQESGIRTFYQGIIPNLAYVYPYCGLNFLFYGLLNRTWNLLQFRE
SSVKSLACGTISGIFAKALLLPIDNVKKRLQVQGSKDFQSSYKGMVNCLQ
SVIREQGIHALYRGIVPSVLKTGLATGISFFVYEETCKLLSK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007133XLOC_007133Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012704TCONS_00012704Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002067Mit_carrier
IPR023395Mt_carrier_dom
IPR018108Mitochondrial_sb/sol_carrier
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002067Mitochondrial carrier proteinPRINTSPR00926MITOCARRIERcoord: 28..42
score: 27.1
coord: 122..140
score: 42.02
coord: 209..231
score: 25.94
coord: 15..28
score: 26.81
coord: 165..183
score: 31.67
IPR023395Mitochondrial carrier domainGENE3D1.50.40.10coord: 6..290
e-value: 1.8E-74
score: 249.6
IPR023395Mitochondrial carrier domainSUPERFAMILY103506Mitochondrial carriercoord: 8..284
IPR018108Mitochondrial substrate/solute carrierPFAMPF00153Mito_carrcoord: 9..101
e-value: 6.2E-22
score: 77.2
coord: 110..193
e-value: 1.5E-16
score: 60.0
coord: 201..292
e-value: 1.4E-22
score: 79.4
IPR018108Mitochondrial substrate/solute carrierPROSITEPS50920SOLCARcoord: 200..289
score: 25.474
IPR018108Mitochondrial substrate/solute carrierPROSITEPS50920SOLCARcoord: 10..99
score: 26.546
IPR018108Mitochondrial substrate/solute carrierPROSITEPS50920SOLCARcoord: 107..192
score: 17.45

Blast
[Close]
BLAST of TCONS_00012704-protein vs. Swiss-Prot (Human)
Match: TPC (Mitochondrial thiamine pyrophosphate carrier OS=Homo sapiens GN=SLC25A19 PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 2.458e-60
Identity = 113/300 (37.67%), Postives = 173/300 (57.67%), Query Frame = 0 
Query:   13 LQYSFAGALSGVVSRFLGQPLDVIKIRLQLQNKEAGQ----LKYTGVLNTCKLIFKEEGLFGFWKGHVPAQVLSIFYGSVQFASFERSRSFLNPYLCQRKELND-------FLSGGNAGIVSSLFVHPLDLLRTR-AVSNQAKQSLSLHILIKSTAQESGIRTFYQGIIPNLAYVYPYCGLNFLFYGLLNR--TWNLLQF--RESSVKSLACGTISGIFAKALLLPIDNVKKRLQVQGSKDFQSS------YKGMVNCLQSVIREQGIHALYRGIVPSVLKTGLATGISFFVYEETCKLL 290
             Q + AG++SG+V+R L  P DVIKIR QLQ++   +     KY G+L   + I +EEG   FWKGHVPAQ+LSI YG+VQF SFE     +   L  R  + D       F+ GG A  +++L VHP+D+LRTR A   + K   +L   + +  +  G + FY+G+ P L  ++PY GL F  Y  L     W +     +  ++++L CG+ +G+ +K L  P+D  KKRLQV G +  +++      YKG+++C + V++++G    ++G+ PS+LK  L+TG  FF YE  C + 
Sbjct:   16 FQVAVAGSVSGLVTRALISPFDVIKIRFQLQHERLSRSDPSAKYHGILQASRQILQEEGPTAFWKGHVPAQILSIGYGAVQFLSFE-----MLTELVHRGSVYDAREFSVHFVCGGLAACMATLTVHPVDVLRTRFAAQGEPKVYNTLRHAVGTMYRSEGPQVFYKGLAPTLIAIFPYAGLQFSCYSSLKHLYKWAIPAEGKKNENLQNLLCGSGAGVISKTLTYPLDLFKKRLQVGGFEHARAAFGQVRRYKGLMDCAKQVLQKEGALGFFKGLSPSLLKAALSTGFMFFSYEFFCNVF 310
The following BLAST results are available for this feature:
BLAST of TCONS_00012704-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TPC2.458e-6037.67Mitochondrial thiamine pyrophosphate carrier OS=Ho... [more]
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