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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012636 ID=TCONS_00012636|Name=TCONS_00012636|organism=Clytia hemisphaerica|type=transcript|length=3179bpRun BLAST on NCBI protein sequence of TCONS_00012636-protein >TCONS_00012636-protein ID=TCONS_00012636-protein|Name=TCONS_00012636-protein|organism=Clytia hemisphaerica|type=polypeptide|length=536bp MDGTGGGSFSYLLETTKSKLLVLSSLLGVGAIYYMTKNYLQNGRFFPSWYRun BLAST on NCBI transcript from alignment at sc0000146:312849..321990+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012636 ID=TCONS_00012636|Name=TCONS_00012636|organism=Clytia hemisphaerica|type=transcript|length=9142bp|location=Sequence derived from alignment at sc0000146:312849..321990+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000146:312849..321990+ >TCONS_00012636 ID=TCONS_00012636|Name=TCONS_00012636|organism=Clytia hemisphaerica|type=CDS|length=20943bp|location=Sequence derived from alignment at sc0000146:312849..321990+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00012636 vs. Swiss-Prot (Human)
Match: MIGA2 (Mitoguardin 2 OS=Homo sapiens GN=MIGA2 PE=1 SV=1) HSP 1 Score: 235.728 bits (600), Expect = 2.934e-66 Identity = 107/239 (44.77%), Postives = 164/239 (68.62%), Query Frame = 3
Query: 1032 VPIRSVRTELVHCENDVDFSVKVFCLRRAFKHMLKNSECKEWFVKSGKEMLTTLLKKANYDHMQFGIDYDEMVRYCEDSQNWAFIDEELGQRGVCSMNFYDVILDFMIMDSLEDLQNPPSSVTAAIQNRWLSQSIKKTALSTAIWTVIQSKKRMLQNPDGFYSRFYDVSMHLTPLLAWGFLGPVKELNDVCFSFKDSMLGFMKDIFSSQTVSYKSMQTLAEDIFRVANERKDQLLTALS 1748
VP R++RTEL+ C +D DF K+ C+R+AF+ +L++ + +F K G++M+T L+ KA F Y+EM+ Y + WA EL RGV M+F+D++LDF++MD+ EDL+NPP+SV A ++NRWLS S K+TAL+TA W+V+++K+R+L PDGF S FY VS H++P+LA+GFLGP +L +VC FK ++ +++D+F V Y S+ LA+DI +++ R + LL L
Sbjct: 331 VPCRTLRTELLGCYSDQDFLAKLHCVRQAFEGLLEDKSNQLFFGKVGRQMVTGLMTKAEKSPKGFLESYEEMLSYALRPETWATTRLELEGRGVVCMSFFDIVLDFILMDAFEDLENPPASVLAVLRNRWLSDSFKETALATACWSVLKAKRRLLMVPDGFISHFYSVSEHVSPVLAFGFLGPKPQLAEVCAFFKHQIVQYLRDMFDLDNVRYTSLPALADDILQLSRRRSEILLGYLG 569 The following BLAST results are available for this feature:
BLAST of TCONS_00012636 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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