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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012352 ID=TCONS_00012352|Name=TCONS_00012352|organism=Clytia hemisphaerica|type=transcript|length=4112bp
GAGCAACAGAAAAGAAACCACATTATCTGAAGCAAGAAAAACACCTTTAT
GCATCAACGAAATAGAAACTGAATGAAAAAGGAAGAAACTGAGaagtcag
aaaaaaaatcgaagaaGAGAAAGACTTTATAGAGTAAAATTGCATTTAAT
AGTTgatgttttaaatatttgacCATCATAAACTAAAGACCAGTAAAGAG
GACAATCAAAGCCGAAATGGAACTAAACCAATCGAGAGCTCAGTGGAATT
GTTCAtcgaaagaagaaattttgcacGGAGTGAACCTCAATCTGACGCTA
CGTCAACAAGAAATTATTAGTTGGTTCAGTTTTTCACTCTCCTTGCTAGC
CTGCATTTTCAACTTCATCATCGGCTTTTTGATGTATAAACAACGTTTGT
ATCGAAAGAAAAGTTCGTGGAGCACTTTAACCTTGATTGCCAGTGAGTGG
CTGGTGTCGCTCATTGTACTGGTCTTACACTTCGTGAAGCATAAGAACAC
TTTTTGTGATGAAGGGACATCAAGCTCTCCGcaaatcatcattttcaccA
TCGTGTTGGAGACAATTCCAACAGGAGTGCTCCTCTTTACTGCGCATGAT
CGTTACATACGACTCAAAGACCTCATCAACTACTCCAGTAATTTCAACGC
AAAGCGATTCTGGATGCACTATTGCTGTTCATTGTTACATTCGGTCCTCT
tgggatttttctttttgaatttaccgaattattggttgataatgccaTGG
ATTCTGATTCTGTATTTCCTGGTCATCTCCATCTACGGTTGTACCATCTG
TTTGAAGAGTTACGAAATCACCAAAAACCATGTCCACGAATATTCGACAA
GACTTCTAAACAAACTTCGTAAATTGATGCGTCTACACGTTCAACAAATG
TTGTTTCTTTTCTTCTGTCATGCATTACGTGTTCTTCTCTTAGCCTTCTC
ACTTTCCCATCTTTTCCCAATGGTGGCTTATTCAGTACTTTTCAATACAA
GCATCCTTCTAACGCCCTTCATTTCCTTCTTAAACGCCCTCACCCTTATA
TTGATGGACCCATGCGCACGAAGACTGGTGAAGAAGATCTTCTCATCGCG
AAACACACAACAAATCGCACCAGTAGAGGACAACAGACAACGACAACACA
GCCATCCTATACGACCTCCAGCTGTTCTTTACTTCACCAAAAGAAACAAC
CCACAAGGAGAACCTTCTCATATTGAGCTTGGTATGGGGAGAAGAGAAAT
ACGAAATAAACATGAAGATACAAAAACCTCTCCCAACCTTTCAGAAATGA
GTCATAATAAACATTACAAGATAAATTTGTTCCGAAATGTTGCCGAAAAA
TTTAGCACTTATTAAAAGATTTTGGCGGGAAGCGTTTAAAAACGATTTTG
CAGTTTTATTTTTACGTGTGTAAATAAATTTCATTGTGGATGATAAAATA
TAGCAAAGTTTATGATTTTTGGTTTGAATATTTTACTCTAGGGTACCTAA
TGATCAAACTTNNAACCAATCGAGAGCTCAGTGGAATTGTTCAtcgaaag
aagaaattttgcacGGAGTGAACCTCAATCTGACGCTACGTCAACAAGAA
ATTATTAGTTGGTTCAGTTTTTCACTCTCCTTGCTAGCCTGCATTTTCAA
CTTCATCATCGGCTTTTTGATGTATAAACAACGTTTGTATCGAAAGAAAA
GTTCGTGGAGCACTTTAACCTTGATTGCCAGTGAGTGGCTGGTGTCGCTC
ATTGTACTGGTCTTACACTTCGTGAAGCATAAGAACACTTTTTGTGATGA
AGGGACATCAAGCTCTCCGcaaatcatcattttcaccATCGTGTTGGAGA
CAATTCCAACAGGAGTGCTCCTCTTTACTGCGCATGATCGTTACATACGA
CTCAAAGACCTCATCAACTACTCCAGTAATTTCAACGCAAAGCGATTCTG
GATGCACTATTGCTGTTCATTGTTACATTCGGTCCTCTtgggatttttct
ttttgaatttaccgaattattggttgataatgccaTGGATTCTGATTCTG
TATTTCCTGGTCATCTCCATCTACGGTTGTACCATCTGTTTGAAGAGTTA
CGAAATCACCAAAAACCATGTCCACGAATATTCGACAAGACTTCTAAACA
AACTTCGTAAATTGATGCGTCTACACGTTCAACAAATGTTGTTTCTTTTC
TTCTGTCATGCATTACGTGTTCTTCTCTTAGCCTTCTCACTTTCCCATCT
TTTCCCAATGGTGGCTTATTCAGTACTTTTCAATACAAGCATCCTTCTAA
CGCCCTTCATTTCCTTCTTAAACGCCCTCACCCTTATATTGATGGACCCA
TGCGCACGAAGACTGGTGAAGAAGATCTTCTCATCGCGAAACACACAACA
AATCGCACCAGTAGAGGACAACAGACAACGACAACACAGCCATCCTATAC
GACCTCCAGCTGTTCTTTACTTCACCAAAAGAAACAACCCACAAGGAGAA
CCTTCTCATATTGAGCTTGGTATGGGGAGAAGAGAAATACGAAATAAACA
TGAAGATACAAAAACCTCTCCCAACCTTTCAGAAATGAGTCATAATAAAC
ATTACAAGATAAATTTGTTCCGAAATGTTGCCGAAAAATTTAGCACTTAT
TAAAAGATTTTGGCGGGAAGCGTTTAAAAACGATTTTGCAGTTTTATTTT
TACGTGTGTAAATAAATTTCATTGTGGATGATAAAATATAGCAAAGTTTA
TGATTTTTGGTTTGAATATTTTACTCTAGGGTACCTAATGATCAAACTTT
CATAAggaacttttgaaaatattttcataaaatataatTGGGctgatttc
acaaaaatatatttagcACCTGTGCCACTGTCACCTTCTCACTTCAGAGG
ACTACTTCATTTGGTTGAACGTTGAACAACAAGATAAAGTTATTTTATTC
ATTAAAAATGACATCAGTCTTTCTCTAGATCGGTCAATTTGTGTAGCATT
CATTTTCTTTCAGAACGCTACAGAACCGTTAAGTTTGAGCAGAGAAAGTC
TATAAATTTGTTTCATATTGACTTGTCATTCCATTGTTTTATAGCAAGCT
TGTCATGAAAAAGAATCAAGTCAATGTACAGCAGCCTTTAGACATCGTAA
AATccaaagttcatttttattacattttaaacAAACGGTTCCAAATAAGG
TTTTCTTTGTCTTGGTAATTGTATGCGTTTTTCCAGCAACTCGCGGATCA
TGTTTACAACCGCTACACGTTCACCTCGTGTATTTGGTCTCTCCCTCTCT
CATGACATAAGCAGCTTGAATCGACCAGCGATGgagtttttcttctttct
ggAAGAGGTAGGAGGAGCTAAAGGCACATTATAAGAAAGTCTCGTTTCTT
CGATTATCATATTCTTCAACTTGTTGATATTCCAACCATACTTTGCACTG
ACTTCAATATACCGACATTGCCATTCTTGTtccatcttataaataaactg
CTCCACATCGAATTTCCGTTCACCGTCACCTTCCGATTTGTTCCCGACCA
CAATGATCGGAACTCTATTGTTATGATAATCATTACATTCTCGCTTCAAC
TCCATAATAGCGTTGTAATAGTTTTCCACCTCGACTATGGATTTTTCATC
ATCTACGGCAAAGACCAACACGAAGATGTTGGCACGTTGGATGGCCACAC
GTTTCATGGGAGGGAAGCTATGGAGATCACAAGTGTTCATGATGACAGCG
TTGGGCATCCCTGGCAAAGGCAGTGTTTTGTTAATGCAATCCTGTATGTT
CTCTTTAGCGCCGTATTGGACGAAACCATGGCCGACGACTTGATGAATAA
GGGACGCCTTGCCAGTACCTTGCCCACCGAGAAAAGCCACTTGTAAACAG
ATGCCCCAACTGCCGACGGATGTTTTACGACTCATCTCCTTCAATGGTTT
GATGAGGTTTCTTTCCGTGATCCAATATTTATACAATGTTGTTGTTTAGT
ATTTTAATCTTTATGCTAATAACAGAGTAAATAGAAAGTTAAAAAGGTGA
TCACATAACAAGCATCTTCTTGCTATGTGACCTGTTCATTGATCTAAATA
TACACACAGGGA Run BLAST on NCBI transcript from alignment at sc0000144:32839..36950+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012352 ID=TCONS_00012352|Name=TCONS_00012352|organism=Clytia hemisphaerica|type=transcript|length=4112bp|location=Sequence derived from alignment at sc0000144:32839..36950+ (Clytia hemisphaerica)
GAGCAACAGAAAAGAAACCACATTATCTGAAGCAAGAAAAACACCTTTAT
GCATCAACGAAATAGAAACTGAATGAAAAAGGAAGAAACTGAGaagtcag
aaaaaaaatcgaagaaGAGAAAGACTTTATAGAGTAAAATTGCATTTAAT
AGTTgatgttttaaatatttgacCATCATAAACTAAAGACCAGTAAAGAG
GACAATCAAAGCCGAAATGGAACTAAACCAATCGAGAGCTCAGTGGAATT
GTTCAtcgaaagaagaaattttgcacGGAGTGAACCTCAATCTGACGCTA
CGTCAACAAGAAATTATTAGTTGGTTCAGTTTTTCACTCTCCTTGCTAGC
CTGCATTTTCAACTTCATCATCGGCTTTTTGATGTATAAACAACGTTTGT
ATCGAAAGAAAAGTTCGTGGAGCACTTTAACCTTGATTGCCAGTGAGTGG
CTGGTGTCGCTCATTGTACTGGTCTTACACTTCGTGAAGCATAAGAACAC
TTTTTGTGATGAAGGGACATCAAGCTCTCCGcaaatcatcattttcaccA
TCGTGTTGGAGACAATTCCAACAGGAGTGCTCCTCTTTACTGCGCATGAT
CGTTACATACGACTCAAAGACCTCATCAACTACTCCAGTAATTTCAACGC
AAAGCGATTCTGGATGCACTATTGCTGTTCATTGTTACATTCGGTCCTCT
tgggatttttctttttgaatttaccgaattattggttgataatgccaTGG
ATTCTGATTCTGTATTTCCTGGTCATCTCCATCTACGGTTGTACCATCTG
TTTGAAGAGTTACGAAATCACCAAAAACCATGTCCACGAATATTCGACAA
GACTTCTAAACAAACTTCGTAAATTGATGCGTCTACACGTTCAACAAATG
TTGTTTCTTTTCTTCTGTCATGCATTACGTGTTCTTCTCTTAGCCTTCTC
ACTTTCCCATCTTTTCCCAATGGTGGCTTATTCAGTACTTTTCAATACAA
GCATCCTTCTAACGCCCTTCATTTCCTTCTTAAACGCCCTCACCCTTATA
TTGATGGACCCATGCGCACGAAGACTGGTGAAGAAGATCTTCTCATCGCG
AAACACACAACAAATCGCACCAGTAGAGGACAACAGACAACGACAACACA
GCCATCCTATACGACCTCCAGCTGTTCTTTACTTCACCAAAAGAAACAAC
CCACAAGGAGAACCTTCTCATATTGAGCTTGGTATGGGGAGAAGAGAAAT
ACGAAATAAACATGAAGATACAAAAACCTCTCCCAACCTTTCAGAAATGA
GTCATAATAAACATTACAAGATAAATTTGTTCCGAAATGTTGCCGAAAAA
TTTAGCACTTATTAAAAGATTTTGGCGGGAAGCGTTTAAAAACGATTTTG
CAGTTTTATTTTTACGTGTGTAAATAAATTTCATTGTGGATGATAAAATA
TAGCAAAGTTTATGATTTTTGGTTTGAATATTTTACTCTAGGGTACCTAA
TGATCAAACTTNNAACCAATCGAGAGCTCAGTGGAATTGTTCAtcgaaag
aagaaattttgcacGGAGTGAACCTCAATCTGACGCTACGTCAACAAGAA
ATTATTAGTTGGTTCAGTTTTTCACTCTCCTTGCTAGCCTGCATTTTCAA
CTTCATCATCGGCTTTTTGATGTATAAACAACGTTTGTATCGAAAGAAAA
GTTCGTGGAGCACTTTAACCTTGATTGCCAGTGAGTGGCTGGTGTCGCTC
ATTGTACTGGTCTTACACTTCGTGAAGCATAAGAACACTTTTTGTGATGA
AGGGACATCAAGCTCTCCGcaaatcatcattttcaccATCGTGTTGGAGA
CAATTCCAACAGGAGTGCTCCTCTTTACTGCGCATGATCGTTACATACGA
CTCAAAGACCTCATCAACTACTCCAGTAATTTCAACGCAAAGCGATTCTG
GATGCACTATTGCTGTTCATTGTTACATTCGGTCCTCTtgggatttttct
ttttgaatttaccgaattattggttgataatgccaTGGATTCTGATTCTG
TATTTCCTGGTCATCTCCATCTACGGTTGTACCATCTGTTTGAAGAGTTA
CGAAATCACCAAAAACCATGTCCACGAATATTCGACAAGACTTCTAAACA
AACTTCGTAAATTGATGCGTCTACACGTTCAACAAATGTTGTTTCTTTTC
TTCTGTCATGCATTACGTGTTCTTCTCTTAGCCTTCTCACTTTCCCATCT
TTTCCCAATGGTGGCTTATTCAGTACTTTTCAATACAAGCATCCTTCTAA
CGCCCTTCATTTCCTTCTTAAACGCCCTCACCCTTATATTGATGGACCCA
TGCGCACGAAGACTGGTGAAGAAGATCTTCTCATCGCGAAACACACAACA
AATCGCACCAGTAGAGGACAACAGACAACGACAACACAGCCATCCTATAC
GACCTCCAGCTGTTCTTTACTTCACCAAAAGAAACAACCCACAAGGAGAA
CCTTCTCATATTGAGCTTGGTATGGGGAGAAGAGAAATACGAAATAAACA
TGAAGATACAAAAACCTCTCCCAACCTTTCAGAAATGAGTCATAATAAAC
ATTACAAGATAAATTTGTTCCGAAATGTTGCCGAAAAATTTAGCACTTAT
TAAAAGATTTTGGCGGGAAGCGTTTAAAAACGATTTTGCAGTTTTATTTT
TACGTGTGTAAATAAATTTCATTGTGGATGATAAAATATAGCAAAGTTTA
TGATTTTTGGTTTGAATATTTTACTCTAGGGTACCTAATGATCAAACTTT
CATAAggaacttttgaaaatattttcataaaatataatTGGGctgatttc
acaaaaatatatttagcACCTGTGCCACTGTCACCTTCTCACTTCAGAGG
ACTACTTCATTTGGTTGAACGTTGAACAACAAGATAAAGTTATTTTATTC
ATTAAAAATGACATCAGTCTTTCTCTAGATCGGTCAATTTGTGTAGCATT
CATTTTCTTTCAGAACGCTACAGAACCGTTAAGTTTGAGCAGAGAAAGTC
TATAAATTTGTTTCATATTGACTTGTCATTCCATTGTTTTATAGCAAGCT
TGTCATGAAAAAGAATCAAGTCAATGTACAGCAGCCTTTAGACATCGTAA
AATccaaagttcatttttattacattttaaacAAACGGTTCCAAATAAGG
TTTTCTTTGTCTTGGTAATTGTATGCGTTTTTCCAGCAACTCGCGGATCA
TGTTTACAACCGCTACACGTTCACCTCGTGTATTTGGTCTCTCCCTCTCT
CATGACATAAGCAGCTTGAATCGACCAGCGATGgagtttttcttctttct
ggAAGAGGTAGGAGGAGCTAAAGGCACATTATAAGAAAGTCTCGTTTCTT
CGATTATCATATTCTTCAACTTGTTGATATTCCAACCATACTTTGCACTG
ACTTCAATATACCGACATTGCCATTCTTGTtccatcttataaataaactg
CTCCACATCGAATTTCCGTTCACCGTCACCTTCCGATTTGTTCCCGACCA
CAATGATCGGAACTCTATTGTTATGATAATCATTACATTCTCGCTTCAAC
TCCATAATAGCGTTGTAATAGTTTTCCACCTCGACTATGGATTTTTCATC
ATCTACGGCAAAGACCAACACGAAGATGTTGGCACGTTGGATGGCCACAC
GTTTCATGGGAGGGAAGCTATGGAGATCACAAGTGTTCATGATGACAGCG
TTGGGCATCCCTGGCAAAGGCAGTGTTTTGTTAATGCAATCCTGTATGTT
CTCTTTAGCGCCGTATTGGACGAAACCATGGCCGACGACTTGATGAATAA
GGGACGCCTTGCCAGTACCTTGCCCACCGAGAAAAGCCACTTGTAAACAG
ATGCCCCAACTGCCGACGGATGTTTTACGACTCATCTCCTTCAATGGTTT
GATGAGGTTTCTTTCCGTGATCCAATATTTATACAATGTTGTTGTTTAGT
ATTTTAATCTTTATGCTAATAACAGAGTAAATAGAAAGTTAAAAAGGTGA
TCACATAACAAGCATCTTCTTGCTATGTGACCTGTTCATTGATCTAAATA
TACACACAGGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012352-exon-sc0000144-1491911889:32839..36950 | TCONS_00012352-exon-sc0000144-1491911889:32839..36950 | Clytia hemisphaerica | exon |
| TCONS_00012352-exon-sc0000144-1510915933:32839..36950 | TCONS_00012352-exon-sc0000144-1510915933:32839..36950 | Clytia hemisphaerica | exon |
| TCONS_00012352-exon-sc0000144-1575043694:32839..36950 | TCONS_00012352-exon-sc0000144-1575043694:32839..36950 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000144 | supercontig | sc0000144:32839..36950 + |
Blast
The following BLAST results are available for this feature:
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