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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012292 ID=TCONS_00012292|Name=TCONS_00012292|organism=Clytia hemisphaerica|type=transcript|length=1736bpRun BLAST on NCBI protein sequence of TCONS_00012292-protein >TCONS_00012292-protein ID=TCONS_00012292-protein|Name=TCONS_00012292-protein|organism=Clytia hemisphaerica|type=polypeptide|length=423bp EIRNNNNKIYKMKLQSLLLVLCIVVCGSDGLNVKTKNDFTATPPMGWLQWRun BLAST on NCBI transcript from alignment at sc0000143:436220..458570+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012292 ID=TCONS_00012292|Name=TCONS_00012292|organism=Clytia hemisphaerica|type=transcript|length=22351bp|location=Sequence derived from alignment at sc0000143:436220..458570+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000143:436220..458570+ >TCONS_00012292 ID=TCONS_00012292|Name=TCONS_00012292|organism=Clytia hemisphaerica|type=CDS|length=17808bp|location=Sequence derived from alignment at sc0000143:436220..458570+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00012292 vs. Swiss-Prot (Human)
Match: NAGAB (Alpha-N-acetylgalactosaminidase OS=Homo sapiens GN=NAGA PE=1 SV=2) HSP 1 Score: 342.813 bits (878), Expect = 1.835e-111 Identity = 174/402 (43.28%), Postives = 252/402 (62.69%), Query Frame = 3
Query: 54 LLVLCIVVCGSDGLNVKTKNDFTATPPMGWLQWERYRCILDCETYPEDCIRDSLFMRQGKRLHDDGYAAAGYVHVNIDDCWSEMERDANGTLIADKKRFPNGLKSLADYMHNLGLKLGIYTDMGIKTCAGYPAAIF-HMQKDTQTFADWGIDMIKLDGCNSCTDLFKAGHEAFKFYINQTGREMLYSCEWPSYLPESKPKP-YEDIAKVCNTWRNGADVQDSWSSVMNIINYNGDHQDEMIPYIKPGAFNDPDMLLIGDYSLSEDQSKTQFAIWSILAAPLMISANLETMKDWQKAILLNEEIIAVDQDSLGKMGRRVYKNSNQ-QTWVKPLADGGMAVAIMSTREDIPVFMSVDFKLLNITGS--WNARDLYA------LKDLGSYEGSFKAMVNPSGVVM 1226
+L+ +++ G + N TPPMGWL WER+RC ++C+ P++CI + LFM R+ DG+ GY ++NIDDCW RDA+G L+ D KRFP+G+ LADY+H+LGLKLGIY DMG TC GYP + +D QTFA+W +DM+KLDGC S + G+ +N TGR + +SC WP+Y P+ Y +A +CN WRN D+QDSW SV++I+N+ +HQD + P PG +NDPDMLLIG++ LS +QS+ Q A+W++LAAPL++S +L T+ IL N +I ++QD LG GRR++K + + +++PL++ A+ S R D+P LN TGS + A+D+Y+ L+D E +F ++NPSGVVM
Sbjct: 1 MLLKTVLLLGHVAQVLMLDNGLLQTPPMGWLAWERFRCNINCDEDPKNCISEQLFMEMADRMAQDGWRDMGYTYLNIDDCWIG-GRDASGRLMPDPKRFPHGIPFLADYVHSLGLKLGIYADMGNFTCMGYPGTTLDKVVQDAQTFAEWKVDMLKLDGCFSTPEERAQGYPKMAAALNATGRPIAFSCSWPAYEGGLPPRVNYSLLADICNLWRNYDDIQDSWWSVLSILNWFVEHQDILQPVAGPGHWNDPDMLLIGNFGLSLEQSRAQMALWTVLAAPLLMSTDLRTISAQNMDILQNPLMIKINQDPLGIQGRRIHKEKSLIEVYMRPLSNKASALVFFSCRTDMPYRYHSSLGQLNFTGSVIYEAQDVYSGDIISGLRD----ETNFTVIINPSGVVM 397 The following BLAST results are available for this feature:
BLAST of TCONS_00012292 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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