TCONS_00012124 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012124
Unique NameTCONS_00012124
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2265

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012124 ID=TCONS_00012124|Name=TCONS_00012124|organism=Clytia hemisphaerica|type=transcript|length=2265bp
acggtactttcaaacaaaaaatatattgacaatgaatgggcaaattaaaa
aaagacttaTACAAACAAAACGAAAGGCCAATCAGAACCATCAATTATGG
GGAAAGGGCGTTTTCCTTTCCGAAGAACAGTAGAATTTTTGAGTGGCGGC
AAATTAGTACTTCAAAAACGTGTCAAAACCGTGGCAGTATCGTTCACAAC
TCAAAAAGAAAGCAAAGGATTAAGGGACTTCGTACTAAGGGACTTGCCAC
AGATACAATACAAAAACCCAAACAAGCAATTTGTCTGTTTTCGAAATCGA
CACGAATTCCCACACATTACATTGTATTATGATGGTGGTGAAAGGCAACT
GATCGATGTTTACCAAAAATCTGCCGATGACATTTTGAATCTGGTTGAAT
TGGCAGGTGCTGCCACTGAAAGtgaaattcttcaaaagcaaGAAGTAGAA
TACCCTGGTCGTATCAATCCGGCAAACTTCGGCAAATATGGACATTGTTT
TTGCATTTGTGAAAAACCAGGCCAAGTACCATGCCCATCGAGAGTGAAAT
TCGATAAACCAATCAAATGGTGGCACGATAAAGAATCAGCAGCACAATAA
TCCAGTAAACATTCAATGAACAATTTGCGATATTTTGGGGGATGTATCAT
CATAGTCCCCTGTAGACACGAGATTCTCAGGAAAAATGAGCTGATCACTT
GGGTGTGGAAAGTGCATTTCACATATTTCACATTCATTTATGAtgaagaa
tttaaaaattgtttgggtAATACACCATCATAGCTGCCTGTAGTCATAAA
ATTCACAGGAAAAATCAGATCACTTAGGCGTGAAAAGTGTATTGCACGCT
TTGGAACATACAAGAAGTTCATCCTGGTGGAAAAATCATTCACGTTTCAA
GCACAGTctgcacacaacgttgtttcaaggtttatctaacgttcacaacg
tccatgaACGTtggaacaacgttgtgtgccaactgggagGTGTGAAATTT
ACCTTTCCCATCCAGGGAAACGATCTGCTCAATTTTCATGTGAATCTTGT
GTCAGCAATTAACGAAAAAGAGTTTTAGTTTTTCTGACGAAGTTAATCTA
CATATTTGCggtggtctgtaaaatacacaccgAAGGGAGTTGGATTGGAT
TACGTGGAATGGTTCTTCTATACGACGATCGGAAACTAACAAATTGAGTA
TACGTACATTCGATGATTGAAACATGATTGAACGCGTGTTATGTTGCGAA
CAGCGATTTTTTAAGTTGCATATTTGGATTCTTTAAATAAGTGGCTCAAA
TGAAATCTTTGACTTATGGTCAAAATGATAGATATAAATAAAtgataaat
taaaataaaattagatAATTGTTTTACTGACAATACTTAAGGGGGGTGGG
TTGAagtcaaattgtttttaaaacatttccagattctattttaaccagta
atctaaatcaaaaattcaaattccttGAAGTCCCTTATTTTGCACATGat
ttgaaaattcaacatatacccctgtctcacagaatcggtagaactttttc
ccacagcggGGGTAAAACCCCCGTAAAAgccctatcgaaatcccaaaaga
aattctatagtttcaagcttaaaaaatgcaataaggatggttttagagtg
caattatttttttctcccaCAGAGTGCCCTATTACTACTTTCCTTAGTTT
TATTTTAAGGCGAgcgaatttttcattttatctatGAATTCGAGccgagc
tttttgtgtctttttatctTCTATTTCGCATCTTTCTCAAaatgtaccgg
gtgacccacgaaaatgTATAATGTATAGTTTGGAgggtaactgtgtccga
aaaaaatgactttttacctccatatctcgataactacttttccaaaataa
aaaaatgatacatcaaaattaagtttgcttttcctctttaccatgaaaaa
agaaattagttaaaattcaattttttttcggacacagttaccctccaaac
tcttatacttttttgtgggtcaccctgtagtagtttttgctgccttttta
ggaggtCTTATACTTTGATCGTAGAAATTCTAATTTTAGACTAATTTTAg
tgtatattagcgagtcaggaaaatcttgatttttttgggatatattttag
cgaatcacgatttcaaaaaattttgcgtggataaattttagcgaatactc
gtattacattattgataggaaattgattgaattcgttttctagcatttct
ttgcactgaaaccct
Run BLAST on NCBI

protein sequence of TCONS_00012124-protein

>TCONS_00012124-protein ID=TCONS_00012124-protein|Name=TCONS_00012124-protein|organism=Clytia hemisphaerica|type=polypeptide|length=167bp
MGKGRFPFRRTVEFLSGGKLVLQKRVKTVAVSFTTQKESKGLRDFVLRDL
PQIQYKNPNKQFVCFRNRHEFPHITLYYDGGERQLIDVYQKSADDILNLV
ELAGAATESEILQKQEVEYPGRINPANFGKYGHCFCICEKPGQVPCPSRV
KFDKPIKWWHDKESAAQ
Run BLAST on NCBI

transcript from alignment at sc0000137:401018..411090-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012124 ID=TCONS_00012124|Name=TCONS_00012124|organism=Clytia hemisphaerica|type=transcript|length=10073bp|location=Sequence derived from alignment at sc0000137:401018..411090- (Clytia hemisphaerica)
ACGGTACTTTCAAACAAAAAATATATTGACAATGAATGGGTAAGCTTTCT
AGAAATCCAAACATACATACATCCAAACATGGTTCCCTCGCTCATATCAA
GGCGGCCCGGGACGGGGGTAAGAGAATTAAAGTTTCTTAAGTAAAATCTT
AATTATCACCCAAAAAGTGCCTTTTTTACCATTCCTTTAAGTAGATAGTN
CCGGGACGGGGGTAAGAGAATTAAAGTTTCTAAGTAAAATCTTAATAATT
GTCACCCAAAAAAGTGCCTTTTTTAACCATTCCTTTTAAATAGATAGTCC
CAGCCTTATCCCTCCTTCAGTAAAGCTTTTTATACCTTTCGCAAGTCAGG
AATCTCACGTGTCTTTGCAAGTTTTCATTTCCCGAAAATGGCCTCGCAAA
AGTTAATCCGATTAAAGTGATGAGAAGTAGTAGAGAAGGAAAAGTTGCTA
TTTTTGATGAATTTCTTGAATCCTTGAAAGTTTTAACGATTTCCCCTGTT
ATTGTATCAAAACTGTCATTGATTCAACTTTTTTTGTATTGTAGGCAAAT
TAAAAAAAGACTTATACAAACAAAACGAAAGGCCAATCAGAACCATCAAT
TATGGGGAAAGGGCGTTTTCCTTTCCGAAGAACAGTAGAATTTTTGAGTG
GCGGCAAATTAGTACTTCAAAAACGTGTCAAAACCGTGGCAGTATCGTTC
ACAACTCAAAAAGAAAGCAAAGGATTAAGGTACATAATTTTAATTCTATA
TTGGGCTATTCCAGAAAAAAATTGTATCCCCTATGTTGAGGAGGTCTTTT
TTTCAAAGTGACCCCCTGACTGGATTTTTTCCTCCACTTTTTCAGGACCT
CCTTAGATTTTTTTCTCTCATTTTCTGGACCAGCCTGGATTTTAATCCTC
GTTTTACTGACCACCCTGGATTTTCAACATTATTTTACTGACCACCCTGG
ATTTTTTACGTCCAAAAAACTAGACCACCCTGGATTTTTATTTTCCAGAC
CTCCTCAACATAAGGGGTACAAACTATACTGGAATAGCCTATTTTACAGC
TGGGTGTCCACTGGAAGGAAATTTTTTTGTCGCAAAAAATGAATCCTTCA
ATTTATTTTTGTCAACAGGTATTTCCTACACACTTACTTACTTTCAGTAC
CCAGCTCAATAGTAGTGCTAGTATCATCATCTCAGATATCTGTACAAACT
GAAGGGCTAGATATCTTGTTTCAAGATGTGTCCTGAAAATGTTAAGCCAA
GTTATGACGAGCTTTAACACGATTTGATTGATTGATTGATGATTGATTGA
TTGATTTGAGCCTTTTTTCTTACAATATGTTTAACTTAACTCAAAGATTC
CTTCCATGGTCCTTTTAATATAAGCCTTCCTTCCTTCCATGGTCCTTCTT
AGTAAGTCCACCAAATATTTTCAATAAATAACAATAACATCCTCAAGAAA
ATTTAGAATTTAAGATCTTCGTACCTCATTCGTACCTCCCGTTGAAATTC
TATTGTTTTCAAGTAGAAACTAAAAATTACAAACTATCTTATAACTAGAT
ATCAAATATCTTGACTGTAAAAAGCAGGAAGCCAGTAAAATTTGGAGGTT
CTGCTTAGGACTATGGATGGAAAAAATCTTTTGGTTAAATTTCATTTTTT
ACCTGGTTAACAAGATACTTGATTGAAGTAAATAAACGTTAACTTGTCTT
TTAGTCGTTTTATAAAGCTTTCATTTCTTTGTATTCATGGCCAACAAATT
GAAGTCGTAATTTACATCTTCTTTTATATTTGCAGGGACTTCGTACTAAG
GGACTTGCCACAGATACAATACAAAAACCCAAACAAGCAATTTGTCTGTT
TTCGAAATCGACACGAATTCCCACACATTACATTGTATTATGGTAAGCTG
TTTTGCCCACTATCCACGTAGGCTTGGGGTGGGGGCTAGGGCTGGAGAAT
GTTGAGCATTGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGTGGGGG
CTAGGGCTGGAGAATGTTGAGCATGTATGAACCGGACTTGTCTGTACAAA
ATTTTCAATCTCAGCATGGTTCTTAAAAAAAGAAGCCTTGTGATTATTGT
GATTAAAAAGTCTTATTTGTAAATTACCGGGTTTCACTTTTCTACTTTTT
ACCTTCTTACATCTTTAAAGGTTTTGTTTTTAAATAAGAGTGATATCGTT
TGCTTGCTTACTCATCAATTTTAATTCACAAGCTTTTTCATATTGGATTG
ATACGGATGTGGAGAAAAGGAAAAGAAAAACATTTTTTTGCTTATATAAT
ATAACAATAGCAAGACACTGTCCTGATATGAAACATGTGTCTGATATGAA
ACGGGAACACTTAAATGTAAAAATAAAACCTTTAAAATGAATAAAATCCT
TTTGATTTTAGATGGTGGTGAAAGGCAACTGATCGATGTTTACCAAAAAT
CTGCCGATGACATTTTGAATCTGGTTGAATTGGCAGGTGCTGCCACTGAA
AGGTAAAGAGTAATATTTTTAATCCAAATTTCGTTCCCTACCATCAAGGT
AATGCGTCACCAATTATACATTTCTGTCTTAGAAGATCCAAAATTGGGTG
ATTTAAGAGCCCCCCCCCCAAGCAGCTTGCGTGATGACGTAATAGGGACT
TTTTTGTAGCGTGCCACGTGATTTGGAATTTTTTTTTCGTGATTGCGTGA
TTAGAGGTCAAAAATGTGATCGTGATTTGAAAAATTTTTGAGCCATGATA
CGTGATTTGGACTTTTTCAAAGGGATGCGTGATTATGCTGATTTTCGTGA
TCGAAGACAAAAAATTGCGTGACCGCTTGGGGGATGCCTCATTTAAGAGT
CTTTGAAGCCTTAAGACTTTATTTTATTTTTTCTTATATAAAGAACGTAT
ACTACAGCATTCTCCATGTTTTTAAATGAAAGGTTTTTACTTCTTAACAA
TTTAAAAACAATGTCGAGCCTGATATTACTCAATTTCAAGCAATATAGGG
GTCAAAGTACTTTAGGCGTACAAACTTTCGCGAGCAGAAACTTTCGCAAG
GTCGAAAAATCGCGACATTTACTTTCGCGAATTTGTGGAAAAAATGTTTT
TCGCGAGCATAAACTTTCGCGAATCGTTGGATAAAAATGAGAATTTTAGA
ATAAAAATAGCCTTAAAAGTGAAAAATATTCCTTTAATCTGCTAAAGACG
GTTACTCTTCGACTTTACAAAGGCATTAAAGGATGATAATATGTCGAAAA
TTTGATATTTATTACGATTTCGAGGTTTTATGGATTTCCGATTTTTTTGA
GAATTTTTCGCGAGCATAAACTTTCGCGAATAGCCCTGCTAGGAATTTTC
AAAGCATTTACTTTAGCGAAAAAGGCCAAAATTCGCGAAAATCGCGCGAC
AGTTTCTGTTCGCGAAAGTTTTTACGCCTAAGGTAGTAAAAATTTGGTAT
AACGCCTAAAATACCTCGCTTACATCCAAGCTTATAAAATGCACAAGTGT
TCTATCAAGTTCACAAATTTCTATGTACATCTAAAAAATTAGCTTTTTCG
GGGCTAATAATCGAATTAAAAACATTCTAAAAACATAATAAAATGCATAA
AAATCTACGTCATTCCAATTTTGGATAAAAGTAATTTTGATGAATCTAAT
TTGTCATAAGTCCTGGTTTCTTTAGAGCAAAAAATGATGCTTCAAGATTT
TTATGAGTTTTCTAATTGTTTGGGGCATCGAGGACAATTTTCATTGCACA
TCGAACGAAACTTATATTGTTTTATCATATTGTACCGTCTGTTCTAAGAA
AATTGGCAGCTCGCATATTTTGATACATTGCTCTTGAAGGAGAAAAGATA
CGATTAAAAGTAATAATTCGTTGAAAAGATAATCTTAAGCGGCTGATTCT
AAGACTTTAAAACCTTCAGAGAATTTCGAGCCCAGTAGAAAAATTTTTTA
TCTGAAAACATATTTGAAATCAACGAAGTTTGTAGTTTCAGAAAAGTATA
AATTCCAAATCTCTGGTCCAGTAGTAGACGATCCTATCGTCTACACAAGA
TCACTAAAAAAGGGAATAGTTTAGGAGAGGCGTGATAAATTCGGGTGGAG
TAAGCAGTGGCGGAGATGTTTACANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNCTTCAGAAATAATCACCACAAAGA
CTAACAGGTTTGTTGTTAATATTTTTTACTTCCAACCTTCATTTTTCTTC
TTTTTAACTACAGTAATTTAACTCAAAGACACAACACTTGCTGTACATTT
AGTATCATTTTACACATTTCCCTTCTGATAAAAACAGCCTTTTACCTTCT
TTTCAATACTCCCTATTTTTGTTTTGTTAGAAATTCTACAAGTTACTAAT
TTTTAACTTATATTTTTTATATTTGACATGTTCTGTAGTATAGAAGTATA
ATTATAGCCACAGGAAACATTTTGAAGTTTTTAATTTTTGTTTGTCTGGA
AGATGGTATCAATTTGAAGGTAGACTATGTGCTTCTGGCAGCTAGAAAAG
AGTTTTATTCTGATACAAAAAATCATTACAGGATAGTTTGACAATTGAAG
ACAATTTGTTTACAATATTTTCCACCATATTCTATATTTAAAGATAATTA
TATTCTGGCCTTAGGTGGAAGTTGTAGACGTTCATGGTACAGCAAGATGC
TGTTATTGCTACCATACAATGCTACTTGAAAGTCTTATCCAAATCCCAGC
TGGAAAAAATGATTATTTTCTCAGACATATCGTACTACTTATTCTACAAA
TGGCCTTTCAATTGCTTTTAATCGGCTGATTGGAGTAAAAACTGAGCTTT
TTCAGGGTTTCGAGAAATTAAACCAAAAAATGCCAGAACAAATTCTCACC
CTAATTAAAATCCCTGAAGTAATCTCTATAATTAAAAATTTATTTTTTTC
TGATTTCCTATATAAATTTTAAAAAATAAGGATAAAATTTTAGTTTTAGT
TCTGTTTTGCTAACTTCTTTATATAAACATTAAACTGTCTGCTATTGCAA
AACCATATTTTACTTATTACCATATTAACTTATGTAGCATTAAAATTACC
ATAAATCCTAGAGCACTCTTCAAATTGACTTCAGATCTGGTGTGTATACT
CTCTGTACAGACTGGAAGAAATTTGCAAATAAAAAATGCCCAAAAGATAC
CCCAATCAAAATCTTGTTTTTTCAGCAAAGGGCGACAACAGTCAGACAGT
TTCTTTTTTCAAACAGCTAAATTTCTTGTTAAAAAATTGCTAAAATTGGC
ATAATTCTGGAATTTTTTACATGATATATAAACATTCCTTTGCCACACAA
TTCACCAAATTTTGTTTGAGATATTCATTCAATCTGAAGTTATTTATAAA
AAAATATAAGTCAAAAAATTATATATATGAAATATTTTNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNCATGAAAAATTTCAACCTTTCACACCGTGAATTTGCCAAAAAATT
ATGATGACTTTTAAACGTTTTGTTTTTCATGTACTCGTACATCTGGAATT
AACTGAATATAGACTACGTTCTGGTTCAATTAATTGCCCCTACCTAACCT
AAGATTCACCCTCTTTTTATTTTTCCAGAAAAATCTCAAAGAAGCTTGTC
CATGTCCATTGAAGTGGCAATCTGAACACCCAATAAATAAGAAGAATTAG
AATTTGTAACCCCAGTTCTAAAAGGTTCTATTCCTAGAAACTTGGGAAAA
TAAATTACTAGATTTGAAACAAACATGAAAAAATATACATGAAGGAAAGT
ATTTTCAATCAAAAATCAAAAAGTAGTTTGAGGTATAAAGTAGTTGAGAA
TAGAGTGAGAGCTCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCATTT
TTCCCGCCTTTATTATCACTGTAAACGGACGATAACATCGTCTAGTCCAG
TAGAAAAAATCTTATTTTTTTCATCTTAATTTTCGGACCTACCTGGATGT
CCTATAAATTAAACTTTTTTCATCCTGATTTTCGAAATTTTTGAAAGATT
TTGAAGTCTTACAATCATCCACTTAAGATGATCTTTTCAACAATAAGGTA
ATACTTTCAATCATGTCTTTTCTCCTCCAAGAGCAATGTATCAGAATGAT
GTGCAGGCTGCCAATTTTTTTTGGAACAACTTTTACTGTCTAAATCCAGT
TTAGGTTAATTTGTTTCTTATTCCGCGAAAATCGTCCGACGAGGATGGGA
TTCGAACCCACGCGGGCAGAGCCCAATGGATTAGCAGTCCATCGCCTTAA
CCACTCGGCCACCTCGTCTTGAAAAAATTGCTGAGAAAGATAGTTTATAA
ATTGAATCAATAAATAATTCATTGGTTTCTAACGTGTCAAATTGGTTGCT
ATGTGNTTGCTGAGAAAGATACTTTATGAATTAAATCAATAAATAATTTA
TTGGTTTCTAAGGTGTCAAATTGTTTGCTATGTGAAATTTACTAAATCCT
TTAAAGAATGTCATCTTTAGATAAATACTGAAAGTAATTCAAAGTACTTG
AATGGCTTGAATCTGATAGACTAGGGTCTACTTTGAACAAGATGGAGTTT
TTACAAGCTCTTATGTGATTTGGTTGGTTGTTAACCAGTAATAAAACAAT
TTTGTTACTTTTCTAAAAAACGTGTCATTTTTATTACTTCAAATGACCAA
TTATTAAGATATCTTATATTATAAAAACTCCATCTCACCTGGTCAGCTTC
TGGCTGAACTTTGCTTTCCAATAATTGATAAAGTTTGATGATGCTGAGTC
CAGTGAAGTAGACTAGGTGCACATGACAAGAAATTGCAATCCCCTTTTTT
CAAATAAAACCGTTCCTTCAAGCTATTTTTAAGTAATAGAATAGAGTACG
CGCTATCATAGTCATTATAAAAAAACACTGGTCTGGCAATGTATTGTTTT
AGCTTTATTGTCGAATTTTCTTTTGTTATAAATAAAAGGCAAGTTGCGAT
TTGCATACTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAA
AGTATGCAAAATAAAGTCGATTTGCGAACACAAGCTCTATCTGTTAACAA
TAGAAAGAAACAAAAGCCTTCCAGACCGGGGTTTTTTATAATGACTATGG
CGCTATCTAGTCTATCAAGTGGCTATTACATTGTTTTTGTTTTACAACGC
ATTGATAAATATATATCAAAAGACATTCTTGATGACATTCTATCAGTTGT
CTATGAAGGACTATTAACCCGATATTGCAAGTTTTGGAGATGTGTGCTCC
GTTTTTCTTGTTCCGACCTTATATACCTCTCTATCGACTTTCTTTTGGCA
ATTCTTATGCCTTATGGCTGATACTTTTAAGTTTGAAAGTTCATTTTTCA
ATGAGAACTCTTTTTTCTTTTCATTTCCAGTGAAATTCTTCAAAAGCAAG
AAGTAGAATACCCTGGTCGTATCAATCCGGCAAACTTCGGCAAATATGGA
CATTGTTTTTGCATTTGTGAAAAACCAGGCCAAGTACCATGCCCATCGAG
AGTGAAATTCGATAAACCAATCAAATGGTGGCACGATAAAGAATCAGCAG
CACAATAATCCAGTAAACATTCAATGAACAATTTGCGATATTTTGGGGGA
TGTATCATCATAGTCCCCTGTAGACACGAGATTCTCAGGAAAAATGAGCT
GATCACTTGGGTGTGGAAAGTGCATTTCACATATTTCACATTCATTTATG
ATGAAGAATTTAAAAATTGTTTGGGTAATACACCATCATAGCTGCCTGTA
GTCATAAAATTCACAGGAAAAATCAGATCACTTAGGCGTGAAAAGTGTAT
TGCACGCTTTGGAACATACAAGAAGTTCATCCTGGTGGAAAAATCATTCA
CGTTTCAAGCACAGTCTGCACACAACGTTGTTTCAAGGTTTATCTAACGT
TCACAACGTCCATGAACGTTGGAACAACGTTGTGTGCCAACTGGGAGGTG
TGAAATTTACCTTTCCCATCCAGGGAAACGATCTGCTCAATTTTCATGTG
AATCTTGTGTCAGCAATTAACGAAAAAGAGTTTTAGTTTTTCTGACGAAG
TTAATCTACATATTTGCGGTGGTCTGTAAAATACACACCGAAGGGAGTTG
GATTGGATTACGTGGAATGGTTCTTCTATACGACGATCGGAAACTAACAA
ATTGAGTATACGTACATTCGATGATTGAAACATGATTGAACGCGTGTTAT
GTTGCGAACAGCGATTTTTTAAGTTGCATATTTGGATTCTTTAAATAAGT
GGCTCAAATGAAATCTTTGACTTATGGTCAAAATGATAGATATAAATAAA
TGATAAATTAAAATAAAATTAGATAATTGTTTTACTGACAATACTTAAGG
GGGGTGGGTTGAAGTCAAATTGTTTTTAAAACATTTCCAGATTCTATTTT
AACCAGTAATCTAAATCAAAAATTCAAATTCCTTGAAGTCCCTTATTTTG
CACATGATTTGAAAATTCAACATATACCCCTGTCTCACAGAATCGGTAGA
ACTTTTTCCCACAGCGGGGGTAAAACCCCCGTAAAAGCCCTATCGAAATC
CCAAAAGAAATTCTATAGTTTCAAGCTTAAAAAATGCAATAAGGATGGTT
TTAGAGTGCAATTATTTTTTTCTCCCACAGAGTGCCCTATTACTACTTTC
CTTAGTTTTATTTTAAGGCGAGCGAATTTTTCATTTTATCTATGAATTCG
AGCCGAGCTTTTTGTGTCTTTTTATCTTCTATTTCGCATCTTTCTCAAAA
TGTACCGGGTGACCCACGAAAATGTATAATGTATAGTTTGGAGGGTAACT
GTGTCCGAAAAAAATGACTTTTTACCTCCATATCTCGATAACTACTTTTC
CAAAATAAAAAAATGATACATCAAAATTAAGTTTGCTTTTCCTCTTTACC
ATGAAAAAAGAAATTAGTTAAAATTCAATTTTTTTTCGGACACAGTTACC
CTCCAAACTCTTATACTTTTTTGTGGGTCACCCTGTAGTAGTTTTTGCTG
CCTTTTTAGGAGGTCTTATACTTTGATCGTAGAAATTCTAATTTTAGACT
AATTTTAGTGTATATTAGCGAGTCAGGAAAATCTTGATTTTTTTGGGATA
TATTTTAGCGAATCACGATTTCAAAAAATTTTGCGTGGATAAATTTTAGC
GAATACTCGTATTACATTATTGATAGGAAATTGATTGAATTCGTTTTCTA
GCATTTCTTTGCACTGAAACCCT

Coding sequence (CDS) from alignment at sc0000137:401018..411090-

>TCONS_00012124 ID=TCONS_00012124|Name=TCONS_00012124|organism=Clytia hemisphaerica|type=CDS|length=2016bp|location=Sequence derived from alignment at sc0000137:401018..411090- (Clytia hemisphaerica)
TGAAATTCTTCAAAAGCAAGAAGTAGAATACCCTGGTCGTATCAATCCGG
CAAACTTCGGCAAATATGGACATTGTTTTTGCATTTGTGAAAAACCAGGC
CAAGTACCATGCCCATCGAGAGTGAAATTCGATAAACCAATCAAATGGTG
GCACGATAAAGAATCAGCAGCACAATAAATGGTGGTGAAAGGCAACTGAT
CGATGTTTACCAAAAATCTGCCGATGACATTTTGAATCTGGTTGAATTGG
CAGGTGCTGCCACTGAAAGGGACTTCGTACTAAGGGACTTGCCACAGATA
CAATACAAAAACCCAAACAAGCAATTTGTCTGTTTTCGAAATCGACACGA
ATTCCCACACATTACATTGTATTATGATGGGGAAAGGGCGTTTTCCTTTC
CGAAGAACAGTAGAATTTTTGAGTGGCGGCAAATTAGTACTTCAAAAACG
TGTCAAAACCGTGGCAGTATCGTTCACAACTCAAAAAGAAAGCAAAGGAT
TAAGTGAAATTCTTCAAAAGCAAGAAGTAGAATACCCTGGTCGTATCAAT
CCGGCAAACTTCGGCAAATATGGACATTGTTTTTGCATTTGTGAAAAACC
AGGCCAAGTACCATGCCCATCGAGAGTGAAATTCGATAAACCAATCAAAT
GGTGGCACGATAAAGAATCAGCAGCACAATAAATGGTGGTGAAAGGCAAC
TGATCGATGTTTACCAAAAATCTGCCGATGACATTTTGAATCTGGTTGAA
TTGGCAGGTGCTGCCACTGAAAGGGACTTCGTACTAAGGGACTTGCCACA
GATACAATACAAAAACCCAAACAAGCAATTTGTCTGTTTTCGAAATCGAC
ACGAATTCCCACACATTACATTGTATTATGATGGGGAAAGGGCGTTTTCC
TTTCCGAAGAACAGTAGAATTTTTGAGTGGCGGCAAATTAGTACTTCAAA
AACGTGTCAAAACCGTGGCAGTATCGTTCACAACTCAAAAAGAAAGCAAA
GGATTAAGTGAAATTCTTCAAAAGCAAGAAGTAGAATACCCTGGTCGTAT
CAATCCGGCAAACTTCGGCAAATATGGACATTGTTTTTGCATTTGTGAAA
AACCAGGCCAAGTACCATGCCCATCGAGAGTGAAATTCGATAAACCAATC
AAATGGTGGCACGATAAAGAATCAGCAGCACAATAAATGGTGGTGAAAGG
CAACTGATCGATGTTTACCAAAAATCTGCCGATGACATTTTGAATCTGGT
TGAATTGGCAGGTGCTGCCACTGAAAGGGACTTCGTACTAAGGGACTTGC
CACAGATACAATACAAAAACCCAAACAAGCAATTTGTCTGTTTTCGAAAT
CGACACGAATTCCCACACATTACATTGTATTATGATGGGGAAAGGGCGTT
TTCCTTTCCGAAGAACAGTAGAATTTTTGAGTGGCGGCAAATTAGTACTT
CAAAAACGTGTCAAAACCGTGGCAGTATCGTTCACAACTCAAAAAGAAAG
CAAAGGATTAAGTGAAATTCTTCAAAAGCAAGAAGTAGAATACCCTGGTC
GTATCAATCCGGCAAACTTCGGCAAATATGGACATTGTTTTTGCATTTGT
GAAAAACCAGGCCAAGTACCATGCCCATCGAGAGTGAAATTCGATAAACC
AATCAAATGGTGGCACGATAAAGAATCAGCAGCACAATAAATGGTGGTGA
AAGGCAACTGATCGATGTTTACCAAAAATCTGCCGATGACATTTTGAATC
TGGTTGAATTGGCAGGTGCTGCCACTGAAAGGGACTTCGTACTAAGGGAC
TTGCCACAGATACAATACAAAAACCCAAACAAGCAATTTGTCTGTTTTCG
AAATCGACACGAATTCCCACACATTACATTGTATTATGATGGGGAAAGGG
CGTTTTCCTTTCCGAAGAACAGTAGAATTTTTGAGTGGCGGCAAATTAGT
ACTTCAAAAACGTGTCAAAACCGTGGCAGTATCGTTCACAACTCAAAAAG
AAAGCAAAGGATTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006817XLOC_006817Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012124-exon-sc0000137-1575043694:411052..411090TCONS_00012124-exon-sc0000137-1575043694:411052..411090Clytia hemisphaericaexon
TCONS_00012124-exon-sc0000137-1575043694:410362..410546TCONS_00012124-exon-sc0000137-1575043694:410362..410546Clytia hemisphaericaexon
TCONS_00012124-exon-sc0000137-1575043694:409199..409305TCONS_00012124-exon-sc0000137-1575043694:409199..409305Clytia hemisphaericaexon
TCONS_00012124-exon-sc0000137-1575043694:408539..408629TCONS_00012124-exon-sc0000137-1575043694:408539..408629Clytia hemisphaericaexon
TCONS_00012124-exon-sc0000137-1575043694:401018..402860TCONS_00012124-exon-sc0000137-1575043694:401018..402860Clytia hemisphaericaexon
TCONS_00012124-exon-sc0000137-1510915933:411052..411090TCONS_00012124-exon-sc0000137-1510915933:411052..411090Clytia hemisphaericaexon
TCONS_00012124-exon-sc0000137-1510915933:410362..410546TCONS_00012124-exon-sc0000137-1510915933:410362..410546Clytia hemisphaericaexon
TCONS_00012124-exon-sc0000137-1510915933:409199..409305TCONS_00012124-exon-sc0000137-1510915933:409199..409305Clytia hemisphaericaexon
TCONS_00012124-exon-sc0000137-1510915933:408539..408629TCONS_00012124-exon-sc0000137-1510915933:408539..408629Clytia hemisphaericaexon
TCONS_00012124-exon-sc0000137-1510915933:401018..402860TCONS_00012124-exon-sc0000137-1510915933:401018..402860Clytia hemisphaericaexon
TCONS_00012124-exon-sc0000137-1491911889:411052..411090TCONS_00012124-exon-sc0000137-1491911889:411052..411090Clytia hemisphaericaexon
TCONS_00012124-exon-sc0000137-1491911889:410362..410546TCONS_00012124-exon-sc0000137-1491911889:410362..410546Clytia hemisphaericaexon
TCONS_00012124-exon-sc0000137-1491911889:409199..409305TCONS_00012124-exon-sc0000137-1491911889:409199..409305Clytia hemisphaericaexon
TCONS_00012124-exon-sc0000137-1491911889:408539..408629TCONS_00012124-exon-sc0000137-1491911889:408539..408629Clytia hemisphaericaexon
TCONS_00012124-exon-sc0000137-1491911889:401018..402860TCONS_00012124-exon-sc0000137-1491911889:401018..402860Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012124-proteinTCONS_00012124-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000137supercontigsc0000137:401018..411090 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
20.4907	21.9315	20.9221	20.4736	18.0446	14.4618	21.0553	22.1026	19.5123	17.2917	15.5418	14.8249	12.0856	9.9398	10.9209	10.3558	21.4341	20.6902	5.03957	7.90827	17.0483	17.3099	16.9369	18.37	18.8578	22.3294	7.80963	6.01233	10.7025	9.76144
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007741Ribosome/NADH_DH
IPR012336Thioredoxin-like_fold
Blast
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BLAST of TCONS_00012124 vs. Swiss-Prot (Human)
Match: RT25 (28S ribosomal protein S25, mitochondrial OS=Homo sapiens GN=MRPS25 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.254e-27
Identity = 65/162 (40.12%), Postives = 95/162 (58.64%), Query Frame = 1 
Query:  103 KGRFPFRRTVEFLSGGKLVLQKRVKTVAVSFTTQKE-SKGLRDFVLRDLPQIQYKNPNKQFVCFRNRHEFPHITLYYDGGERQLIDVYQKSADDIL-NLVELAG---AATESEILQKQEVEYPGRINPANFGKYGHCF--CICEKPGQVPCPSRVKFDKPIK 567
            KGRFP RRT+++LS G +V +  VK + V++ T  E  +G R FV  ++PQIQYKNP  Q + F+N    P +  Y D GE+ L+DV  KS  +I+ ++ ++ G        E  +K+++ +     PANFG   +C   CICE  GQVPCPS V   K ++
Sbjct:    4 KGRFPIRRTLQYLSQGNVVFKDSVKVMTVNYNTHGELGEGARKFVFFNIPQIQYKNPWVQIMMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEHIRKILGKNEETLREEEEEKKQLSH-----PANFGPRKYCLRECICEVEGQVPCPSLVPLPKEMR 160
The following BLAST results are available for this feature:
BLAST of TCONS_00012124 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RT252.254e-2740.1228S ribosomal protein S25, mitochondrial OS=Homo s... [more]
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