TCONS_00012124-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012124-protein
Unique NameTCONS_00012124-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length167

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012124-protein ID=TCONS_00012124-protein|Name=TCONS_00012124-protein|organism=Clytia hemisphaerica|type=polypeptide|length=167bp
MGKGRFPFRRTVEFLSGGKLVLQKRVKTVAVSFTTQKESKGLRDFVLRDL
PQIQYKNPNKQFVCFRNRHEFPHITLYYDGGERQLIDVYQKSADDILNLV
ELAGAATESEILQKQEVEYPGRINPANFGKYGHCFCICEKPGQVPCPSRV
KFDKPIKWWHDKESAAQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006817XLOC_006817Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012124TCONS_00012124Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007741Ribosome/NADH_DH
IPR012336Thioredoxin-like_fold
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007741Ribosomal protein/NADH dehydrogenase domainSMARTSM00916L51_S25_CI_B8_2coord: 34..107
e-value: 2.2E-8
score: 43.9
IPR007741Ribosomal protein/NADH dehydrogenase domainPFAMPF05047L51_S25_CI-B8coord: 43..91
e-value: 1.8E-6
score: 27.6
NoneNo IPR availableGENE3D3.40.30.10coord: 25..107
e-value: 2.6E-15
score: 55.8
IPR012336Thioredoxin-like foldSUPERFAMILY52833Thioredoxin-likecoord: 26..102

Blast
[Close]
BLAST of TCONS_00012124-protein vs. Swiss-Prot (Human)
Match: RT25 (28S ribosomal protein S25, mitochondrial OS=Homo sapiens GN=MRPS25 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.169e-31
Identity = 65/162 (40.12%), Postives = 95/162 (58.64%), Query Frame = 0 
Query:    3 KGRFPFRRTVEFLSGGKLVLQKRVKTVAVSFTTQKE-SKGLRDFVLRDLPQIQYKNPNKQFVCFRNRHEFPHITLYYDGGERQLIDVYQKSADDIL-NLVELAG---AATESEILQKQEVEYPGRINPANFGKYGHCF--CICEKPGQVPCPSRVKFDKPIK 157
            KGRFP RRT+++LS G +V +  VK + V++ T  E  +G R FV  ++PQIQYKNP  Q + F+N    P +  Y D GE+ L+DV  KS  +I+ ++ ++ G        E  +K+++ +     PANFG   +C   CICE  GQVPCPS V   K ++
Sbjct:    4 KGRFPIRRTLQYLSQGNVVFKDSVKVMTVNYNTHGELGEGARKFVFFNIPQIQYKNPWVQIMMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEHIRKILGKNEETLREEEEEKKQLSH-----PANFGPRKYCLRECICEVEGQVPCPSLVPLPKEMR 160
The following BLAST results are available for this feature:
BLAST of TCONS_00012124-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RT252.169e-3140.1228S ribosomal protein S25, mitochondrial OS=Homo s... [more]
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