|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011958 ID=TCONS_00011958|Name=TCONS_00011958|organism=Clytia hemisphaerica|type=transcript|length=1452bpRun BLAST on NCBI protein sequence of TCONS_00011958-protein >TCONS_00011958-protein ID=TCONS_00011958-protein|Name=TCONS_00011958-protein|organism=Clytia hemisphaerica|type=polypeptide|length=345bp MKEINVDDENDTLVQLMNELIDVCTLGICFDIHRSIRLGCWQLLEDDDDERun BLAST on NCBI transcript from alignment at sc0000134:342542..369204+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011958 ID=TCONS_00011958|Name=TCONS_00011958|organism=Clytia hemisphaerica|type=transcript|length=26663bp|location=Sequence derived from alignment at sc0000134:342542..369204+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000134:342542..369204+ >TCONS_00011958 ID=TCONS_00011958|Name=TCONS_00011958|organism=Clytia hemisphaerica|type=CDS|length=14532bp|location=Sequence derived from alignment at sc0000134:342542..369204+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00011958 vs. Swiss-Prot (Human)
Match: AT7L3 (Ataxin-7-like protein 3 OS=Homo sapiens GN=ATXN7L3 PE=1 SV=1) HSP 1 Score: 180.259 bits (456), Expect = 2.984e-51 Identity = 119/303 (39.27%), Postives = 173/303 (57.10%), Query Frame = 3
Query: 150 QLMNELIDVCTLGICFDIHRSIRLGCWQLLEDDDDESQKEYEIVNQPGVDVFGQVPVK-KQQDCICPNCSRTLAANRFAPHLEKCMGMGRNSSRIASKRLRGQGPVDGEYNDD----NDVDYDWFEYXXXXXXXXXXXXXXNSPKRSKGRKGDGTLGLSSLVTNGNTSRPGTPCSTGSGEISSNTKAGPTLQALEALSQEEKVALLTQTCGAISEHTGKMCTRTGKCVQHTDEQRKTVRELLLGDIDEVPWPPAMRGEGINQLSSSLDQDDIHVDVDGYEEIDGGSLLREFTPLSWEQESNVS 1043
++ +L++ LG CF++HR+++ G + L+D D +S K++EIV+QPG+D+FGQV + K ++C+CPNCSR++AA+RFAPHLEKC+GMGRNSSRIA++R+ ++ +D + D DW +K K+ +K NSP+RSK K NG S S N G + E L EE +LLT CG ISEHT KMCTR+ +C QHTDEQR+TVR LG P A+ + ++ SSLD D ++ D +L+ + L W+ S++S
Sbjct: 22 EIYADLVEDSCLGFCFEVHRAVKCG-YFFLDDTDPDSMKDFEIVDQPGLDIFGQVFNQWKSKECVCPNCSRSIAASRFAPHLEKCLGMGRNSSRIANRRIANSNNMNKSESDQEDNDDINDNDWSYGSEKKAKKRKSDKNPNSPRRSKSLKH----------KNGELS--------NSDPFKYNNSTGIS---YETLGPEELRSLLTTQCGVISEHTKKMCTRSLRCPQHTDEQRRTVRIYFLG-------PSAV----LPEVESSLDN-------DSFDMTDSQALI---SRLQWDGSSDLS 281 The following BLAST results are available for this feature:
BLAST of TCONS_00011958 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.