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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010066 ID=TCONS_00010066|Name=TCONS_00010066|organism=Clytia hemisphaerica|type=transcript|length=6414bpRun BLAST on NCBI protein sequence of TCONS_00010066-protein >TCONS_00010066-protein ID=TCONS_00010066-protein|Name=TCONS_00010066-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1744bp MKNLSXDKDKYIHRTKAIGKDAFASLNNEEFVSNVKDALCAHVRPEKVDGRun BLAST on NCBI transcript from alignment at sc0000102:154050..162777+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010066 ID=TCONS_00010066|Name=TCONS_00010066|organism=Clytia hemisphaerica|type=transcript|length=8728bp|location=Sequence derived from alignment at sc0000102:154050..162777+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000102:154050..162777+ >TCONS_00010066 ID=TCONS_00010066|Name=TCONS_00010066|organism=Clytia hemisphaerica|type=CDS|length=36645bp|location=Sequence derived from alignment at sc0000102:154050..162777+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00010066 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 222.246 bits (565), Expect = 1.478e-57 Identity = 139/353 (39.38%), Postives = 190/353 (53.82%), Query Frame = 3
Query: 4281 DCVGESKQSSVCDTKKKCPE-HGYWSNWSEYSDCSVTCAKGTQFRTRICEGQ--KHGGDKCEGEAKETRVCDTEVYCPVDGEWSQWSSYGECSVTCEKGTHYRTRTCVGK--KHGGKDCEGESKQSGVCDTKVHCPSDGAWGSWSSYGECSVTCGKGTHYRTRACVGKK--HGGKECIGETKQSGVCDTKVKCPVDGYWSQWSAYGQCSETCGKGTQYRTRTCVGPA--HGGKDCVGESKQSSVCDTKKKCPEHGYWSNWSEYSDCSADCGKGTQFRTRVCEGRK--HGGDDCEGKAKETRVCDTKKHCPVDGKWSQWSEYSECSVTCGNGKQYRTRTCE--GKKHGGKNCVG 5300
+CV + SV + HG +S WS + CSVTC KG Q R+R+C +GG C+G E R C + CPVDG WS+WS + EC+ +C +G RTRTC +HGG+ CEG + + +C+ + CP GAW +W +G CS +CGKGT R R C GG C G Q VC+ + CP+ G W+ W+++ CS +CG G + RTR C P +GG+ C G QS C++ CP HG WS WS + CS C G R R C+ +GG C G + + C+T CPVDG W W +S+CS +CG G++ R R C+ GG+ C G
Sbjct: 4508 ECVARNLMGSVLVRVPVIVQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNK-PCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIR-PCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNER-NCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNS-DPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDM-CPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPG 4855 HSP 2 Score: 219.935 bits (559), Expect = 6.279e-57 Identity = 138/347 (39.77%), Postives = 189/347 (54.47%), Query Frame = 3
Query: 3501 IDGYWAQWSSYTACSKTCGEGRQSRTRKCN--PPQHGGKKCIGLDEEERKCTVRGCKSDGKWSQWSSYGQCSVSCAKGTQMRTRTCVGQA--NGGKGCNGKDKQTRVCDTKVQCAVDGYWSQWSSYGECSVTCEKGTHYRTRTCVGKK--HGGKDCEGESKQSGVCDTKVHCPSDGAWGSWSSYGECSVTCGKGTHYRTRTCVG--KKHGGKDCVGETKQSGVCDTKIKCPVDGYWSQWSAFGQCSETCGKGTQYRKRTC--IGQAHGGKDCVGESKQSSVCDTKKKCPEHGYWSNWSEYSDCSVTCAKGTQFRTRICE--GQKHGGDKCEGEAKETRVCDTEVYCP 4505
+ G ++QWS++ ACS TCG+G Q R+R CN P +GGK C G D E R C + C DG WS+WS + +C+ SC +G Q RTRTC + +GG+ C G + +C+ + C V G WS W +G CS +C KGT R R C GG C+G Q VC+ + +CP G W +W+S+ CSV+CG G RTR C ++GG+ C G QS C++ CP G WS WS +G CS TC G R RTC ++GG+ C G Q C+T CP G W +W +S CS +C G + R R+C+ GG C G+ + C+ + CP
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIR-PCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNER-NCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSD-PCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNT-DMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQA-CP 4869 HSP 3 Score: 216.083 bits (549), Expect = 1.096e-55 Identity = 144/375 (38.40%), Postives = 204/375 (54.40%), Query Frame = 3
Query: 2616 SGVCDTKVHCPVNGYWSQWSSYGECSVSCNKGTHYRTRTC--IGTAHGGKVCVGESKQSGVCDTKVHCPSDGAWGXXXXXXXXXXXCDKGTHYRTRTCVGK--KHGGKDCVGEDKETGICDTKVPCPVNGYWSSWSSYGECSVSCGVGTHYRTRTC--IGAAHGGKFCVGESKQSGECDTKVHCPSDGVWGSWSKYGECSVTCGKGTHIRSRTC--IGKKHGGKDCVGNSQESGICNTNVFCGESVAGGWGEWSEYGPCSKNCKGGYQTRHRYCNNPKPKNGGKYCVGDGYESKSCGGDGYCPIDGYWAQWSSYTACSKTCGEGRQSRTRKCN--PPQHGGKKCIGLDEEERKCTVRGCKSDGKWSQWSSYGQCS 3710
S + V V+G +SQWS++ CSV+C KG R+R C A+GGK C G + C K CP DG+W WS + +C+ SC +G RTRTC +HGG+ C G E +C+ + PCPV+G WS+W +G CS SCG GT R R C A GG +C G Q C+ + +CP G W +W+ + CSV+CG G R+R C ++GG+ C G+ +S CN++ C G W WS +G CS+ C GG R+R C+NP P NGG+ C G + + C D CP+DG W W S++ CS +CG G ++R R C+ P GG+ C G + +C V+ C + ++ S G +
Sbjct: 4517 SVLVRVPVIVQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNK-PCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIR-PCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNER-NCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDP-C--PTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTD-MCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACPGGPQRARGSVIGNIN 4884 HSP 4 Score: 214.542 bits (545), Expect = 2.857e-55 Identity = 147/378 (38.89%), Postives = 199/378 (52.65%), Query Frame = 3
Query: 4419 ICEGQKHGGDKCEGEAKETR---VCDTEVYCPVDGEWSQWSSYGECSVTCEKGTHYRTRTC--VGKKHGGKDCEGESKQSGVCDTKVHCPSDGAWGSWSSYGECSVTCGKGTHYRTRACVGK--KHGGKECIGETKQSGVCDTKVKCPVDGYWSQWSAYGQCSETCGKGTQYRTRTC--VGPAHGGKDCVGESKQSSVCDTKKKCPEHGYWSNWSEYSDCSADCGKGTQFRTRVCEGR--KHGGDDCEGKAKETRVCDTKKHCPVDGKWSQWSEYSECSVTCGNGKQYRTRTCEGKK--HGGKNCVGXXXXXXXXXXXXXXXXPYWAQWGAWSSCSNSCGKGTQTRARICMKDPRQVT---TCVGAPTQTQSCQLKPC 5504
I + QK + E A+ + V V G +SQWS++ CSVTC KG R+R C +GGK C+G + C K CP DG+W WS + EC+ +CG+G RTR C +HGG+ C G + +C+ + CPV G WS W +G CSE+CGKGTQ R R C PA GG C G Q VC+ ++ CP HG W+ W+ +S CS CG G + RTR C ++GG CEG ++ C++ CP G WS WS + CS TC G+ R RTC+ +GG+ C G D + ++C + C + W W +WS CS SCG G +TR R+C P V C G TQ C ++ C
Sbjct: 4496 IADAQKEDTSEFECVARNLMGSVLVRVPVIVQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNK-PCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIR-PCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCN-ERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDP-CPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLC-DHPVPVKGGRPCPGDTTQVTRCNVQAC 4868 HSP 5 Score: 205.682 bits (522), Expect = 1.415e-52 Identity = 135/329 (41.03%), Postives = 181/329 (55.02%), Query Frame = 3
Query: 1866 KGTHYRTRTC--MGKKHGGKDCVGKDKETGVCDTKVHCPVNGYWSQWSSYGECSVSCDKGTHYRTRTC--IGTAHGGKVCVGESKQSGVCDTKVKCPVDGYWSQWSAYGQCSETCGKGTQYRKRTC--VGQAHGGKDCVGESKQSSVCDTKKKCPEHGYWSNWSEYSDCSVTCAKGTQFRTRICEG--RKHGGDKCEGEAKETRVCDTKVHCPVNGYWSQWSSYGECSVSCNKGTHYRTRTC--IGTAHGGKVCVGESKESGVCDTKVHCPVNGYWSQWSSYGECSVSCNKGTHYRTRTC--IGTAHGGKVCVGESKQSGVCDTKVHCP 2816
KG R+R C +GGK C G D E C K CPV+G WS+WS + EC+ SC +G RTRTC HGG+ C G + + +C+ + CPV G WS W +G CSE+CGKGTQ R R C A GG C G Q VC+ ++ CP HG W+ W+ +S CSV+C G + RTR C ++GG KCEG ++ C++ CP +G WS WS +G CS +CN G R RTC ++GG+ C G + C+T + CPV+G W W S+ +CS SC G R R C GG+ C G++ Q C+ + CP
Sbjct: 4547 KGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNK-PCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIR-PCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCN-ERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSD-PCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDM-CPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQA-CP 4869 HSP 6 Score: 205.682 bits (522), Expect = 1.439e-52 Identity = 146/359 (40.67%), Postives = 192/359 (53.48%), Query Frame = 3
Query: 2112 SGVCDTKVKCPVDGYWSQWSAYGQCSETCGKGTQYRKRTC--VGQAHGGKDCVGESKQSSVCDTKKKCPEHGYWSNWSEYSDCSVTCAKGTQFRTRICEGR--KHGGDKCEGEAKETRVCDTKVHCPVNGYWSQWSSYGECSVSCNKGTHYRTRTC--IGTAHGGKVCVGESKESGVCDTKVHCPVNGYWSQWSSYGECSVSCNKGTHYRTRTCIGTA--HGGKVCVGESKQSGVCDTKVHCPSDGAWGXXXXXXXXXXXCDKGTHYRTRTC--VGKKHGGKDCVGEDKETGICDTKVPCPVNGYWSSWSSYGECSVSCGVGTHYRTRTC--IGAAHGGKFCVGESKQSGECDTKVHCP 3152
S + V V G +SQWSA+ CS TCGKG Q R R C A+GGK C G + C K CP G WS WS + +C+ +C +G Q RTR C +HGG CEG A E +C+ + CPV+G WS W +G CS SC KGT R R C A GG C G + VC+ + +CP++G W+ W+S+ CSVSC G RTR C +GG+ C G QS C++ CP+ G W WS + CS +C+ G R RTC +GG+ C G D + C+T + CPV+G W SW S+ +CS SCG G R R C GG+ C G++ Q C+ + CP
Sbjct: 4517 SVLVRVPVIVQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQ-NKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIR-PCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNER-NCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSD-PCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDM-CPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQA-CP 4869 HSP 7 Score: 204.912 bits (520), Expect = 2.658e-52 Identity = 147/369 (39.84%), Postives = 206/369 (55.83%), Query Frame = 3
Query: 1920 DCVGKDKETGVC-DTKVHCPVNGYWSQWSSYGECSVSCDKGTHYRTRTC--IGTAHGGKVCVGESKQSGVCDTKVKCPVDGYWSQWSAYGQCSETCGKGTQYRKRTCVGQA--HGGKDCVGESKQSSVCDTKKKCPEHGYWSNWSEYSDCSVTCAKGTQFRTRICEGRK--HGGDKCEGEAKETRVCDTKVHCPVNGYWSQWSSYGECSVSCNKGTHYRTRTCIGTA--HGGKVCVGESKESGVCDTKVHCPVNGYWSQWSSYGECSVSCNKGTHYRTRTC--IGTAHGGKVCVGESKQSGVCDTKVHCPSDGAWGXXXXXXXXXXXCDKGTHYRTRTC---VGKKHGGKDCVGEDKETGICDTKVPCP 2984
+CV ++ V V V+G +SQWS++ CSV+C KG R+R C A+GGK C G + C K CPVDG WS+WS + +C+ +CG+G Q R RTC + HGG+ C G + + +C+ + CP HG WS W + CS +C KGTQ R R+C GG C+G + +VC+ + +CP++G W+ W+S+ CSVSC G RTR C +GG+ C G +S C++ CP +G WS WS +G CS +CN G R RTC ++GG+ C G Q C+T + CP DG+WGSW S+S+CS SC G R R C V K GG+ C G+ + C+ + CP
Sbjct: 4508 ECVARNLMGSVLVRVPVIVQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNK-PCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNI-RPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNER-NCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSD-PCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDM-CPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVK-GGRPCPGDTTQVTRCNVQA-CP 4869 HSP 8 Score: 164.466 bits (415), Expect = 4.808e-40 Identity = 123/292 (42.12%), Postives = 176/292 (60.27%), Query Frame = 3
Query: 798 KVDGQWGQWTAWSECPVTCGNGQQTKKRICNSPAPTNGGKFCKGADIETQGCDADKPCPNDGSWSEWSSFGECDVTCGSGYKVRSRVCRGTA--HGGKKCTGSTTDKRECLLKKCPVNGVWSSWTSYSECSATCDYGFKTRTRVCKG--TAHGGKTCTGSDTENTECKIKDCAKDGXXXXXXXXXXXXXXXDKGTHYRTRTCMG--KKNGGKDCVGKDKETGVCDTKVHCPVNGXXXXXXXXXXXXXXXDKGTHYRTRTC--MGKKHGGKDCVGKDKETGVCDTKVHCPVNG 1649
+V G + QW+AW C VTCG G Q + R+CN P P NGGK C+G+D+E + C +KPCP DGSWSEWS + EC +CG G + R+R C + HGG+ C G+ + C ++ CPV+G WS+W + CS +C G +TR R+C A GG C G++T+ C ++C G W++W+S+S+CSVSC G RTR C + GG+ C G D ++ C++ CP +G WS WS + +CS +C+ G R RTC +GG+ C G D + C+T + CPV+G
Sbjct: 4527 QVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQ-NKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSD-PCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDM-CPVDG 4815 HSP 9 Score: 141.739 bits (356), Expect = 3.421e-33 Identity = 94/237 (39.66%), Postives = 136/237 (57.38%), Query Frame = 3
Query: 789 RPEKVDGQWGQWTAWSECPVTCGNGQQTKKRICNSPAPTNGGKFCKGADIETQGCDADKPCPNDGSWSEWSSFGECDVTCGSGYKVRSRVCRG--TAHGGKKCTGSTTDKRECLLKKCPVNGVWSSWTSYSECSATCDYGFKTRTRVCKGTA--HGGKTCTGSDTENTECKIKDCAKDGXXXXXXXXXXXXXXXDKGTHYRTRTC--MGKKNGGKDCVGKDKETGVCDTKVHCPVNG 1481
+P VDG W +W+ W EC +CG G QT+ R CN+P+ +GG+ C+G +E C+ +PCP G+WS W +G C +CG G + R+R+C A GG C G+ T + C + CP++G W++W S+S CS +C G + RTR C +GG+ C GSD ++ C C G WS WS + +CS +C+ G R RTC NGG+ C G D + C+T + CPV+G
Sbjct: 4581 KPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNI-RPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDM-CPVDG 4815 HSP 10 Score: 127.102 bits (318), Expect = 8.893e-29 Identity = 70/189 (37.04%), Postives = 101/189 (53.44%), Query Frame = 3
Query: 759 NVKDALCAHVRPEKVDGQWGQWTAWSECPVTCGNGQQTKKRICNSPAPTNGGKFCKGADIETQGCDADKPCPNDGSWSEWSSFGECDVTCGSGYKVRSRVCRGTA--HGGKKCTGSTTDKRECLLKKCPVNGVWSSWTSYSECSATCDYGFKTRTRVCKG--TAHGGKTCTGSDTENTECKIKDCAKDG 1313
N + + ++RP V G W W W C +CG G QT+ R+CN+P P GG +C GA+ + Q C+ ++ CP G W+ W+S+ C V+CG G + R+R C +GG+KC GS C CP +G WS W+ + CS TC+ G R R C ++GG+ C G D++ C C DG
Sbjct: 4628 NAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCN-ERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDG 4815 The following BLAST results are available for this feature:
BLAST of TCONS_00010066 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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