TCONS_00009948 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009948
Unique NameTCONS_00009948
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length677

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009948 ID=TCONS_00009948|Name=TCONS_00009948|organism=Clytia hemisphaerica|type=transcript|length=677bp
caatttctttaaagaaagcTTTTAAACACTTGATAAGATAACCGATTTCA
TTAGTTTTACTCAACGTAAGGACAGTTGCTTGAATCAACGAATGGATGGT
CACGATTATTCCATTGTCAGTGTTTCGTTTATTTATAATCGATGCACTTT
CTAACTGGTGAAGGGCAGAATCAAGATCAATTTTGNTACTAGCTAAGTTG
AATTTTGTCATTAGtgtagtttcattgttttcaccaaaaacttgattttt
actCTGGAGTACTCTTTCACCTAATGAAATGGCGTTTTCATGATCACCTA
CGTCTGAATAATCATTCATCAGGTTACCCATAGTAATTAGTGTCGATTTA
TCATATTCACCATAAAGTTCCGATTTTTTCTTGTAAACCTCTTCATGCAT
CTCCAAGCTTTTCTTGTGGTTGCCAATCTCTCGATAAAATGATGCAAGGT
TGGTTTTCACTACTAGAACGTATTGCGTAATTTTGGTGTCCACTTTGGAC
GGTGATAATTTTTCTTCTAGTATTTTTATAGCGTCTGTGAACCTGtgcaa
atcttttaaaattaatGCATGGTTATTTTTAACATTGAAAAAGTTCACCT
CGTTTGAAAGTTCACATTTTGTAATAATTCTGTCAATGATTGTCAAAGCA
GCTTCAGACTTTCGTTTTACTTTCGCG
Run BLAST on NCBI

protein sequence of TCONS_00009948-protein

>TCONS_00009948-protein ID=TCONS_00009948-protein|Name=TCONS_00009948-protein|organism=Clytia hemisphaerica|type=polypeptide|length=225bp
AKVKRKSEAALTIIDRIITKCELSNEVNFFNVKNNHALILKDLHRFTDAI
KILEEKLSPSKVDTKITQYVLVVKTNLASFYREIGNHKKSLEMHEEVYKK
KSELYGEYDKSTLITMGNLMNDYSDVGDHENAISLGERVLQSKNQVFGEN
NETTLMTKFNLASXKIDLDSALHQLESASIINKRNTDNGIIVTIHSLIQA
TVLTLSKTNEIGYLIKCLKAFFKEI
Run BLAST on NCBI

transcript from alignment at sc0000100:63927..64603

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009948 ID=TCONS_00009948|Name=TCONS_00009948|organism=Clytia hemisphaerica|type=transcript|length=677bp|location=Sequence derived from alignment at sc0000100:63927..64603 (Clytia hemisphaerica)
CGCGAAAGTAAAACGAAAGTCTGAAGCTGCTTTGACAATCATTGACAGAA
TTATTACAAAATGTGAACTTTCAAACGAGGTGAACTTTTTCAATGTTAAA
AATAACCATGCattaattttaaaagatttgcaCAGGTTCACAGACGCTAT
AAAAATACTAGAAGAAAAATTATCACCGTCCAAAGTGGACACCAAAATTA
CGCAATACGTTCTAGTAGTGAAAACCAACCTTGCATCATTTTATCGAGAG
ATTGGCAACCACAAGAAAAGCTTGGAGATGCATGAAGAGGTTTACAAGAA
AAAATCGGAACTTTATGGTGAATATGATAAATCGACACTAATTACTATGG
GTAACCTGATGAATGATTATTCAGACGTAGGTGATCATGAAAACGCCATT
TCATTAGGTGAAAGAGTACTCCAGagtaaaaatcaagtttttggtgaaaa
caatgaaactacaCTAATGACAAAATTCAACTTAGCTAGTANCAAAATTG
ATCTTGATTCTGCCCTTCACCAGTTAGAAAGTGCATCGATTATAAATAAA
CGAAACACTGACAATGGAATAATCGTGACCATCCATTCGTTGATTCAAGC
AACTGTCCTTACGTTGAGTAAAACTAATGAAATCGGTTATCTTATCAAGT
GTTTAAAAgctttctttaaagaaattg

Coding sequence (CDS) from alignment at sc0000100:63927..64603

>TCONS_00009948 ID=TCONS_00009948|Name=TCONS_00009948|organism=Clytia hemisphaerica|type=CDS|length=675bp|location=Sequence derived from alignment at sc0000100:63927..64603 (Clytia hemisphaerica)
GCGAAAGTAAAACGAAAGTCTGAAGCTGCTTTGACAATCATTGACAGAAT
TATTACAAAATGTGAACTTTCAAACGAGGTGAACTTTTTCAATGTTAAAA
ATAACCATGCattaattttaaaagatttgcaCAGGTTCACAGACGCTATA
AAAATACTAGAAGAAAAATTATCACCGTCCAAAGTGGACACCAAAATTAC
GCAATACGTTCTAGTAGTGAAAACCAACCTTGCATCATTTTATCGAGAGA
TTGGCAACCACAAGAAAAGCTTGGAGATGCATGAAGAGGTTTACAAGAAA
AAATCGGAACTTTATGGTGAATATGATAAATCGACACTAATTACTATGGG
TAACCTGATGAATGATTATTCAGACGTAGGTGATCATGAAAACGCCATTT
CATTAGGTGAAAGAGTACTCCAGagtaaaaatcaagtttttggtgaaaac
aatgaaactacaCTAATGACAAAATTCAACTTAGCTAGTANCAAAATTGA
TCTTGATTCTGCCCTTCACCAGTTAGAAAGTGCATCGATTATAAATAAAC
GAAACACTGACAATGGAATAATCGTGACCATCCATTCGTTGATTCAAGCA
ACTGTCCTTACGTTGAGTAAAACTAATGAAATCGGTTATCTTATCAAGTG
TTTAAAAgctttctttaaagaaatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005578XLOC_005578Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009948-proteinTCONS_00009948-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009948-exon-sc0000100-1491911889:63927..64603TCONS_00009948-exon-sc0000100-1491911889:63927..64603Clytia hemisphaericaexon
TCONS_00009948-exon-sc0000100-1510915933:63927..64603TCONS_00009948-exon-sc0000100-1510915933:63927..64603Clytia hemisphaericaexon
TCONS_00009948-exon-sc0000100-1575043694:63927..64603TCONS_00009948-exon-sc0000100-1575043694:63927..64603Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000100supercontigsc0000100:63927..64603 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.478532	0.6184	1.14367	0.727672	0.137165	0.237382	0.681314	0.0745711	0.868146	0.461699	0.14307	0.147706	0	0.125516	0.095243	0.200164	0.366473	0.214503	0	0	0.723148	2.10686	0	0	0.08414	0.14234
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011991WHTH_DNA-bd_dom
IPR011990TPR-like_helical_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009948 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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