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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009803 ID=TCONS_00009803|Name=TCONS_00009803|organism=Clytia hemisphaerica|type=transcript|length=672bp
gacagattgaaactaaaatttaccgctaaatttcgaaaacaatatcaatc
gtaaacaaagaaATTACTAGATttaatccgtcgtcaaaaatacggcgcat
tttttaaggcgcactttttcttgcctgagaaaggttagagattctactct
agcccttcaggctttaaactcaatggtttcaGTCCTTGCTCccatcaaaa
tttcttcctaagcttacctaactcctacgctcacttttcctgcgtgatac
cgttccagcccgactggcgtacCAGTCTACCTCTATAAAATCGAGCTGAC
ACACAGTCCCGTATTGTATTGATGTTCATTTAACGTTTTATAGACGTTAG
ATTGATGTTGGTAAATGCTGTGAACTGCCTTTGCTCATTACAACAttgta
aaaattttttgttgttttgtggcAATTCCTAAAATCTGGTATCTTTTGCT
TTAGAACCTCTCAAATGTTTCAAGACCCAGAATATGTTGTTCGGCAGCTG
GCAATTATAAGCTGTGACAATTTCACGTTGAATGAACTATGTCTTCATTC
GCCAGCGATTTGACGTCATTATGAGAAAATATTGGATTCATTCTGCTGGT
CTCCTTTCGGTGTTGTTATAGTAACAAATCATAATGGTTGCTGAtggttt
taaaaataaatccacTGATATC Run BLAST on NCBI transcript from alignment at sc0000099:189888..196377+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009803 ID=TCONS_00009803|Name=TCONS_00009803|organism=Clytia hemisphaerica|type=transcript|length=6490bp|location=Sequence derived from alignment at sc0000099:189888..196377+ (Clytia hemisphaerica)
gacagattgaaactaaaatttaccgctaaatttcgaaaacaatatcaatc
gtaaacaaagaaATTACTAGATttaatccgtcgtcaaaaatacggcgcat
tttttaaggcgcactttttcttgcctgagaaaggttagagattctactct
agcccttcaggctttaaactcaatggtttcaGTCCTTGCTCccatcaaaa
tttcttcctaagcttacctaactcctacgctcacttttcctgcgtgatac
cgttccagcccgactggcgtacCAGTCTACCTCTATAAAATCGAGCTGAC
ACACAGTCCCGTATTGTATTGATGTTCATTTAACGTTTTATAGACGTTAG
ATTGATGTTGGTAAATGCTGTGAACTGCCTTTGCTCATTACAACAttgta
aaaattttttgttgttttgtggcAATTCCTAAAATCTGGTATCTTTTGCT
TTAGAACCTCTCAAATGTTTCAAGACCCAGAATATGTTGTTCGGCAGCTG
GCAATTATAAGCTGTGACAATTTCACGTTGAATGAACTATGTCTTCATTC
GCCAGCGgttatatttttagatttttccttTCCATAGGGGTTGGGCTGCG
AAATTAGGTTCCATAACTTTTACGACCATTAGAAGGTTTAAGAAAGGAAC
TTTCGAGGTCACAACTTATCCGTACCTGCCatttgacacccccttctcac
agatccactgggaacccttcaNCTTTCGAGGCCACAACTTATCCGTACCT
GCCatttgacacccccttctcacagacccactgggaacccttcccactgg
gaaaattggccaaaataacgtcttcagtggaaaattatactcttattttt
gtccccgttgaaaataatcagataagaaaatcctcactgcaaaatattgt
gccttttttcatccccactgaattttctgggcttgaaaataatgaaattc
aaACCCcgttcataaaaaatataggaatatcaatccccatcgagttttgg
tccgttattttgcCCCCACTGGCTgcaaaaatcccaccgggtctgtgaga
agggtgtcATTTGATACCCTTCTTTACCTCTCGTCATTTTAGTCAAAGAA
ATGAGGCGTGTCTTGTTAAgaataaaaatgtaaataaaatggtagacaaa
gtaacaaaaagtttaaaagtagaatgattttttatttttggtgcttttTA
GCTCAAGTTTTAACGTACGTACCTTGTTAAGATGAGTAAACATTCTAAAC
GTTTTTCGTAGTTCAATGATTTGACCAGCCTATGTTCGTGTACAACTTCT
GTTATTCTTTTTGGGAAGCTAAATAAACTGCCCAATTTATAAGAGCACTG
GGAGCTTGCGAATTGTTCTGACGAAGCAAATTTTAATGTACATTTGTGAT
TGGTGCTTTTAGAATTACTAGTTATTTTGTAACTCAAACGTCACAAAGTG
TATTTCTAGTGAGCTGGAGGAAGTATAAAATGCAAttatttttgtatgaa
agtaaaAACCCTTTCCAAAGTTAATGACCTCAATCAATTAGGGTTCTCAG
TGATAATTGCTTTTCTTAGAATGTTTCATTCCagtgttttgaaaattgag
ctCACTTTTTTATTGTCAACAAAGTTTAATGCTAAGACCAGCAATTCTGA
TTAATGAGAAGCCAAAGTAAACAACACAGtcaaaaaaaacaccaaaaact
aGTTTTTGGATTCCTACAGtcgaaataactcgaaaaaatctAGAACAACT
CGGCCTAACTCTTTACTGTGCAAACTGGCTAATTTGCAACTGTTCTGATA
GCAGTCTCATAAATGTCaaatcattttaattaatatGAAAGTATTTTAAT
AaacttctaaaaatattctaCATAAGTGTTCGAATCATAAGGAAAAATAA
TACATTGGATAAAAAggcgattttttttcttcaaaattacaAAGGTGCGA
AGCCATTTTCGCTTACAGAAGTGCGGAGcttgaaattacaaaactgcgca
aaaatttcaaaactgcACGCATAACAGATACAAAAATCATCTTTCCCGTA
GGAAAGATTATGGGTAGTTAATAATCAGAGACATgggttttagatttttt
tgttcAGTTTTAAGGCTCATAATTTCGGTGAATGATTCTAAAACAGGCtt
tcatgaaaaaagttttcaaaaagttcaagaaaaataatcaggagtaaaaa
gaaaagaaacgaaaaaagGTTATCTTCTTTCATTCATATCggtcataatt
ttcaaaaaccatACAGGACTTACAATTTAGCTTGGTTTCCAAAAACTGAG
ATACTTCAATTTGAGTTCTGAACTGTTGAGGGCTTTTAAGTGCAATGTTG
ATGATGGTGATCTTTGAGGGCGTTTCTTCTGCACTTCTTTGATGGTGATT
TATCAGAATTTAAATCGAAGAATCTCAATTTCGGGAatccaaattaaaaa
ataagtaCTGTATAATTTCTGAAAAGGACGATCAATTTTTATGAAAGATT
CAAAGTCTCTGCAAAAATTCACgaaaaataatatgaaaaagtttctttat
gtaaaaaggtttgaaaattgcaaattgaaaaattaaaaccttaaaaagtt
aaaataacaTAAAATTCCTAAAATCACCTGCTTGAAATCCTCCACCTTAA
AAATTTACCTTAAAAaccaaacattttttatatatatttacaaaaaatta
aaaaagatcaaatttataaaaagatgaaatgaaatatacaatgaaaataa
attttaaaatgattcTGAAATTGAAAGTTTACCACAAGCTTTGGTAAACT
TCATCCACGTACTGGAAGACTTGTTCAGACATTGTGGGTTCTGGGGCTGG
GGGTTCTGGAATGCAGAAGTAATCATAGCTAAAAAGAAAAGGAATAGTTT
TATACAGTTGAGTCTATAACtggaacacgcacggggaacagaaatttgtt
ccagttaaggaaatttttagTTATGGTAGTTATAGGTAAAgtttgttaac
tgaagggaccataaaacttgttcgagctCAAGAACGACGCAACAGGTACG
GCTGAtacaagattttcaaaagaaaactcgaaattttccttttggggcca
tccatatagtacttACGcaggggggtttagcaaaagcgtacatctattgt
ttaaatgacatcatttctattgttctctgcgtgcaagggggggggagggg
gtatcaaatttttggaaaatctttgcgtacttactatatggacggccccc
tTCGTCGGTAAAATCACTTAAAGTTCCTCATTCACCGTAcaagatataaa
aagcttccgtcgtgcctgcgTTAAAAAAACATTCGCGCCATGGAGGTTGG
AGTTGAACAGACTCCATTGTTtagtaaaaactttttcttttttgtcattg
aGTTAGCTTTCAAAAAGGGTTTGGGTACTAGATTTTTTTCTCTATCAGCA
CAAAGTGTAAAAGAAAATAAGGCTTCAAAGCCATTCTAAGAGCTACGAGG
GCTTTAAAAGATTTGAACATTCTTAGTCTACATAAtatacagctccaggc
ttttaggccttactcttggtctataggcactgctatatgCAGCCACTAGT
GGCCCCCACCGGGAATTTGCTTTTTAATTGGATTAAACATAATAGCGTTT
TATAGAAGTTTTTAACAAAAGAAGTTTATCAAtagagatttcaaataaaa
gaatgtttaaaacacagctgattggcttaggtttcgaaactctctattgt
ttcactAAAACCCTagtgcgcatgcgatgtatccaaagaatttcaatatt
caaaacaagagcagtgcgcatatcccgaagagtaggagttttacgctcga
aatgaaggaagatatgacgtagcctaaacattctaagaacatttcaacAC
AGCATACATAAAGTCACTACTTCAATGACTTGAAATTACTTACCCGATGC
TTTTGGAAACACCACAAGCGCTATGGGTAAAGTATGTGGACCAGCTATCA
TCTGGTTCTTGGGCAGGCTCTGGGGGTGCACTGAAACTAAAATTAAAAGG
TTTGAAATTATATATATCTCTACAAGTTAGTCTTTCCTTGCCCCCCGGTG
AAATTTCTATAAATCAGATATCTCGAGAACAGTCATCAAAAATATCCCTG
GCCTTGTCGaaacaatagcgagtttatgtattttcacttttcaagactgt
ggagtgactgaagcgatttggaaaaccTTGCAGTTaattttgacccgcaa
aatcgaggacagtGAAAGTGCTTGTTTACCGTCCTCGATCAatcaggatg
tagacaaattagGAGCcgaccgtctccgtcgcagaaaagcACAAATACAT
AATACAATACAAATATACACAACTCGCTAATAAGTGCTATAAAGTGGAAA
AATTTAATCCTGCTCCTCGCCCGGGTGAAATATGTCTCAAAGACAGTTAG
ACAATATAAAGATTGAATTTCTTACCTAAGGATGGCGAATAAAGAATCAA
ACTGACTGATGATCCAAAGATATATATCGGAAAGCCATTGGTCCCATGTC
AGAGGTTGGATGGGCTCTGGTTCCTCTTGGATCTGGTCCCTGAAAGTTAG
AGGAATTATctaattgaaattttaagaaaagttACGTACAAGTTTGTTTT
CCTGAAACCGCAAAAAAAAAACCACTCCTTGGTCAAATTTTGCTGGTATA
ATTAGTTCTAATAACTCGAACATACCCGGAATTTATTCGATTCCCAAAAG
GGAATTTTGAGTTTTATGGTTTTTTCAGTTAATAATGCTTTATCTTATTA
TATTTgaacttgtttccagtccccgtcaaggagaagcCCTCTTAAAACAC
TTTATACAATTCGAACAAGTGCTGTTCAAAATCTAATTAGCGAGGGTCAA
CTTCATAATACATACACGGTGCCGTGGCAAGTAATTTGATGTTGGGCGGG
GGTATAGGTTCAGTGACACTGTgtgggccaaccatggtttgcccCGAGGG
GAGAAAGCTTGAAATCTAgagctctaaattggctaaaaacacactcaaaa
aactaaaataattcgaataaaGGCAAAGTATtccattttatgaaaaaaat
cactttcatGAAAATTATTGGGGTACTAAGCTACCCTAGCCCCCTGGTAG
CTACGGCACTGCATACAAacatattttctttcatttcattaGTACTCACC
CAGAATTAGCGAAACCGAAGAAATAGAGAGCGATCCCTAGGACCAAGAAT
CCACAAATGGTCAGTATGACTGGTTTAAGCCAGGGTGCTAGTATCTCCCT
CACAGTAGGTTTGctatataaaaacaaataaacagTTGTTAGTTAATGTG
TTGGCATTTCTTGGCGTTCTGCTGAATTAAAAGTTCAATCGAGAatgaca
tttttaggcttgctACTTTATCTAATCGATTTTAcgatttcattttcttt
tatccCGGACCCTGGAGCTGTATGAGAAATCCATTGTCTTTTCAAATTGC
TAATATAGTATGTGTTGCGCAACGACTACATACGATTAAGATTTGGGAGG
GGTGTATAATGTCTTTCAGACTATATTCTTAGACTATTGGGGCCATTTCT
AAGCTTATTGGTCCCTATATCCTAAAGATTTTAAGTCATAAGTCTCACGT
CAATACTCAGAGTTTCTGTTTCTAAGTTAAGGCATTTAAATACTACTTGA
ATTCTATTTTTGCCATATATTCTGCCTATGATTGTATAGTTGGGACCcct
taaaaatattcaattttgtttATCAATGATTGCGATAGGGGTTGACAAAT
GATTAGGGagggagagagagagagagagagagaggagATGATTAGGTTAC
TTAAAGAATTATTACCTCTGAACATCAAGCTCACTATTCAGAATAGAGTT
TTTTGTCTTAAGCATTTCAGTTGATAATTGATTAACATCAGTGACGTTAG
TTAAGCTAGCGACGTCCCTCTCGACGGGAACGTCTTGGGTATCATCAACC
ACTACATTGTTCATCTGTGTAGAGGAGTCAGTCTTTTTGATGGTGGCAGC
CGGTGCCAAGCTTGAGCGACGAGTCTAAGAAGAGAAACAAAGTACAGTAG
ACTcgcgctaattcgaacttccattatattcgaatctttctataattcga
acttttgTCTATAAATGGTTTGAtgatttaaacattttcaatgaaaaaat
atattaattaCTTACTTGCATAATGACACGTGTTGATGTTTGAGAATATA
AAGTTGTTTGAATGCACGTCTGTTGAAAGCGTGTGtagcaaaaagaaaga
aattcgtTTTGACgttagatattttttttcgaaagttttaaaatgtgaaa
tgacgtcaattttgtcTTATTATAGATTTGACGTCATTATGAGAAAATAT
TGGATTCATTCTGCTGGTCTCCTTTCGGTGTTGTTATAGTAACAAATCAT
AATGGTTGCTGAtggttttaaaaataaatccacTGATATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009803-exon-sc0000099-1491911889:189888..190444 | TCONS_00009803-exon-sc0000099-1491911889:189888..190444 | Clytia hemisphaerica | exon |
| TCONS_00009803-exon-sc0000099-1510915933:189888..190444 | TCONS_00009803-exon-sc0000099-1510915933:189888..190444 | Clytia hemisphaerica | exon |
| TCONS_00009803-exon-sc0000099-1575043694:189888..190444 | TCONS_00009803-exon-sc0000099-1575043694:189888..190444 | Clytia hemisphaerica | exon |
| TCONS_00009803-exon-sc0000099-1491911889:196263..196377 | TCONS_00009803-exon-sc0000099-1491911889:196263..196377 | Clytia hemisphaerica | exon |
| TCONS_00009803-exon-sc0000099-1510915933:196263..196377 | TCONS_00009803-exon-sc0000099-1510915933:196263..196377 | Clytia hemisphaerica | exon |
| TCONS_00009803-exon-sc0000099-1575043694:196263..196377 | TCONS_00009803-exon-sc0000099-1575043694:196263..196377 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000099 | supercontig | sc0000099:189888..196377 + |
Blast
The following BLAST results are available for this feature:
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