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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007843 ID=TCONS_00007843|Name=TCONS_00007843|organism=Clytia hemisphaerica|type=transcript|length=2593bp
ACAGCTTATTCTGTAACTAGGCTTAATAAAGCATCAAGAGACAAAAGAGG
AGAGAGAGAAAGAAGTTGTAACTAATCAACAAGCCATAGTGTTATTTATG
GGTGAGACTCGAACGACACTGTTGGctggaaaaataaacattggaAGAGA
AGGAGAATCGAGTTGTTTTGATAGAATGTTGTGTGCGTCAATACTACAAC
GCGTTGATGATCAGACAGATCACAACCAGCGATTGAGTTTATCATCAACC
GAACTCATGTCGCTCAGTGAAGAAATCAGTAAACTGCTTCAGCAGAAAGA
CGAAAATGCACAACATGAACAGCTCATCAATGATCTTGAAAATCGAGTCG
ACTTGTTGAACAATAAAGTCAATACATCAAAAGAACGTCATCAATCGGAG
CTTGAATATTTGAACATGGCTTTAGAAAATCGTACGGATGAGTTACAGCA
AGTTCAAGAGAAACATGATGAGAAGGAGGCTTCTCTTAAACAAATCAAAA
GACAGTTGCAAAGACAAGAAACGGAGATTGATCAGAAAGATACCACTATC
AAACATTACGAGAAAGAGATTGTAGAGTTCAAAGAAGAAGTGGAGCGCTT
GAATCGTagattgaaaacattgaaaggtgaaaaagaaaaacatactaAAG
GAATTGAGATCGAAGAAAAACAGAATCGCATCGTGAAGTTTAATGATGAT
GTCGCTGTAAAGGTGTTTGAGGTCGAGGACCACACTGAAGCACTTCAGAA
AGATATGAGTCGGTTGCAGAAGGAAAACGAGAAATTGAAACGTAAATTAG
ATGAGTTGAAATGGCAAATGAAAGCTAAGGATATTATGATTAGCAATGGT
GAAGATACTATGCAAGCTCTTGAGAATCAAGCGGAGGAGATCGAGATGCT
CCAAGACCGTGTGGAAGAGTTGGAGGAGAAATTGAGGTTGCAGAGCTCTG
GTGAACAACCTATTGATAATCCAGAGGTTGATATCTTGAAGATGAAAGTG
AGAGAGGTTGAGATGAAACTGAAACAAAGAGATGAAACGATCCGCTCAAT
GAAGGAGAGCAAGAAGACTGAGGAGAGCGCAGTGTTTGTCGAAGAACGAA
TCGTAGAAAAGGTTATGGCATCTGAACCAAAAATGATAATCGAAGAACGA
GTCGTTGAGAAAGTTGTGGTGAAAACAGAATCGCTAGCACCTCAGGAACC
AGTTGTTGTTGTAGAGCCCAACCCAAGAGAAGAGGAGTACCTGAAAATGT
TGATCACACTTCGCGATACTTTCTACAGCGAATTACAATTGAAACCACAA
CAGCATGTACAAAATGGAAAGGGTCATTTTGAAGTCGTTTTCGAGGATCT
ACAGACTGTATTAGGATCCATACGACAGAAAGTGAGCAAGGTTCTTGAAG
AAAGTGTGGTGGAAAACAATAAAGAAATTCAACGTGTGCAATcattgaaa
aaacaaaacacttCCTTGAAAGAGGAGATTCAAACCAAAACTGAAAACTA
TAATAACACCGTCAAATcacttgaaatcaaaaatgaagctTTATCGAATT
CGGCCAGCATACAGCAACAGTTTAATGACGAACTGAGTGAAAAATGTACG
GTAGCCGAGAAAGAAAGAGATGACATAAATGACAGAATGAAAGAATTATC
ACTGAAAATGTTGGTAAGAGATTCAGAAGTGGAccgtttgaaaaatattc
ttgatgatttgaagaaaagtaaaaaattgaagaaattgatgaaaaaagac
aaaaagaaatcCAATTCGTTGAGTAATTTATTGAAAGCATAATGATGATG
TTGATAAGAATAATAATGCTGTGAATGTGACTGAAACTTTCAGTTTTGTC
TTGTGAATAATTTTGAGGAAATATTAACTTAGATTttgtttgaagaattt
ttttttgttttgttgaataAGAGGTAATTTAACCCTATTTAAAGTCGAAA
ACGTTTTGACAAATCTTCTTTTCTCTTTAACCGATTAGGATGAAgagtta
tttttgttttatgcAACTTTCCTGAAAATTCCTAGCCCTCAATTTCCCTT
TCCTGAGATTGAGTAATATTGTCATAACTACGACACCAGAACTAACAGAA
TGCTTTTGAATAAGCTGCAGATCCTGTGTTTTTCACCTGCTCAAAATTCT
TGTTGGATACTGTATCAAAACTATTCGAAAGAAGGAAATTGTGAAAGGAA
ATTCTAATAGCTTTAACATATCTTATTTTGAAACACTAGTAGAATATGTG
CTAATTATTTTTAGTACGAATAAATTCTTTGCCCCGATTTTAAAATCCTA
AGCTCTTTTCAGCCAAAGGGTTTGTCATAATCTTGTTAAATAAGAAGGAA
TTAAGACTTTTTCTTATATAAGGTTAAATGTTCAATACTCTAAGCTAGGA
CATTTTACTGTAATCTTTTTTTCCATGTTTAGACTAATCAGATGATGGGT
CATGtttcgtttgtttttgtttagttTACATTCTTGTTATTGATGTGTAT
AGTTGTAACTTGTTCTAGATGTCATATAATCATTCTTTATATAATACCAT
CTTATTATAAACAGTAATATAATTCTTCATGTGTACCATTAAA Run BLAST on NCBI protein sequence of TCONS_00007843-protein >TCONS_00007843-protein ID=TCONS_00007843-protein|Name=TCONS_00007843-protein|organism=Clytia hemisphaerica|type=polypeptide|length=564bp
MGETRTTLLAGKINIGREGESSCFDRMLCASILQRVDDQTDHNQRLSLSS
TELMSLSEEISKLLQQKDENAQHEQLINDLENRVDLLNNKVNTSKERHQS
ELEYLNMALENRTDELQQVQEKHDEKEASLKQIKRQLQRQETEIDQKDTT
IKHYEKEIVEFKEEVERLNRRLKTLKGEKEKHTKGIEIEEKQNRIVKFND
DVAVKVFEVEDHTEALQKDMSRLQKENEKLKRKLDELKWQMKAKDIMISN
GEDTMQALENQAEEIEMLQDRVEELEEKLRLQSSGEQPIDNPEVDILKMK
VREVEMKLKQRDETIRSMKESKKTEESAVFVEERIVEKVMASEPKMIIEE
RVVEKVVVKTESLAPQEPVVVVEPNPREEEYLKMLITLRDTFYSELQLKP
QQHVQNGKGHFEVVFEDLQTVLGSIRQKVSKVLEESVVENNKEIQRVQSL
KKQNTSLKEEIQTKTENYNNTVKSLEIKNEALSNSASIQQQFNDELSEKC
TVAEKERDDINDRMKELSLKMLVRDSEVDRLKNILDDLKKSKKLKKLMKK
DKKKSNSLSNLLKA Run BLAST on NCBI transcript from alignment at sc0000080:508705..512932+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007843 ID=TCONS_00007843|Name=TCONS_00007843|organism=Clytia hemisphaerica|type=transcript|length=4228bp|location=Sequence derived from alignment at sc0000080:508705..512932+ (Clytia hemisphaerica)
ACAGCTTATTCTGTAACTAGGCTTAATAAAGCATCAAGAGACGTAAGAAA
AATTCTTTATATTGAAATCTTTCATAATAAAAAGTGTTCAGCCCCTACTT
ATCTGTTCAAATTGTTACAAAGTCTCGTAAACATTAAGTCACTACTTATG
TCAGAAATGACGAGAGATTAAATTCGCGTTACTACCATATTAGAGAAACA
TTTGTGATGTTGGATGTGTATGGGAAGGTTGATAGCTGCTAATGAACTCG
TGTCTTAAGTCTTGTGTATCTCATGTTGGGCTCTAACGGACCATCGATTT
AAATATCTATTTTCCGATTTAGATTGAGTTAGGCTTGCTTACTTCATTTG
ACGCGTATTTTAGATCGTGGGGAAACTTTAAGTTCATTTTTCCTTGAAGA
TAGCGAAAAAATAACTCAATATTTTACAGCTGTACAAAGCTGTCGAaaaa
tcttttatatttttcaaatcccTATTCCAAATGTAGATATgtcttttgaa
ggttttttgGGAGATTATCCGCTGATATCAGtggttgttttattttttaa
gataTGCGTGTTCGAAAACGTTGTGGTTTGCTAAGCTTATCCTAGGTCAA
ACTCTGGAATTCCAAATATCATTACTCGAGTACTCGATATTGTTATgaaa
tttctggatttttttCTGTGTTCCTTATACTGTATACAAGATAAAGGTTA
TGTTCATTGCATGATTCCAAAATGCATATTTTCCCAGAGTTTCTAATACT
CGaggtatttttcttttcaagaactACTCAAGGAAATCGTTGTCCTCAGG
AAACATTTATATCTGTAAAAAGATAAGATCACAGTCCATCACAATATAAT
TAGATCAAAATGTGACATTCTTTCGTTCGAAATAATTTGTCCGACCACCA
AATTATCATACAATATACTCATAAAATCGGGTTATGAGAAAAAGTTCTCC
TTATATAGTTAAAACACCTTAAAAGTTAAACATTCAACATCATTACGAGA
ATGGTCAGCTTGTTTAAcggaaacaatgaaaatataggACAAAGAAAACA
AACTCCTTGGACCTCACTTTAATTCCTTTAATTCCTAATTTAATCCTTGT
AATTTAGATCCTAAAAGGAGGAGCTGTATTTTCCGAGGGGTTTTGACATT
TGCGTTTCGATAATGGCTGCACAAGTCCATCGAGGTCAACTTTGTCTTAA
AATTCCTTCATATATAGACAACTTCGACACCTTGTCCCCGTTTGATAAAA
GACCTCTCAATCTGGTTCGTTCAAAAAAGCGATTCGTTGATCTGTTTAAG
CCTTTTACTGGTCATTTTCCCATCTGTAGAGCGTTAAGTAGCTAATAGTT
ACATTTGAAACCAACAGGTTATTAATCGAATGACATACATAGTGGTTACA
AAATCAATCATAACTATCAGTTACTACATTTGGTTGTAATTATCTAACGT
CATCCTTGATTTGAACGTCTTCTGAATGTCCTTTGAATGTCAGGAATGCT
TATTATAGCTTTCCTCTTGTCAGAAATGATTCATTTTCTAATGATTAAAA
GAAGATGGCAGGTTTTTGACAAACGTTTCCTTAATAGCTTTCACTCTGCA
TTTGAAAGTGTATTTTTTGTGACATTTCCTTCAATAGTTATCCAGTTGTT
AATTATTTGTCTTTCTATTTGTTATAGAAAAGAGGAGAGAGAGAAAGAAG
TTGTAACTAATCAACAAGCCATAGTGTTATTTATGGGTGAGACTCGAACG
ACACTGTTGGctggaaaaataaacattggaAGAGAAGGAGAATCGAGTTG
TTTTGATAGAATGTTGTGTGCGTCAATACTACAACGCGTTGATGATCAGA
CAGATCACAACCAGCGATTGAGTTTATCATCAACCGAACTCATGTCGCTC
AGTGAAGAAATCAGTAAACTGCTTCAGCAGAAAGACGAAAATGCACAACA
TGAACAGCTCATCAATGATCTTGAAAATCGAGTCGACTTGTTGAACAATA
AAGTCAATACATCAAAAGAACGTCATCAATCGGAGCTTGAATATTTGAAC
ATGGCTTTAGAAAATCGTACGGATGAGTTACAGCAAGTTCAAGAGAAACA
TGATGAGAAGGAGGCTTCTCTTAAACAAATCAAAAGACAGTTGCAAAGAC
AAGAAACGGAGATTGATCAGAAAGATACCACTATCAAACATTACGAGAAA
GAGATTGTAGAGTTCAAAGAAGAAGTGGAGCGCTTGAATCGTagattgaa
aacattgaaaggtgaaaaagaaaaacatactaAAGGAATTGAGATCGAAG
AAAAACAGAATCGCATCGTGAAGTTTAATGATGATGTCGCTGTAAAGGTG
TTTGAGGTCGAGGACCACACTGAAGCACTTCAGAAAGATATGAGTCGGTT
GCAGAAGGAAAACGAGAAATTGAAACGTAAATTAGATGAGTTGAAATGGC
AAATGAAAGCTAAGGATATTATGATTAGCAATGGTGAAGATACTATGCAA
GCTCTTGAGAATCAAGCGGAGGAGATCGAGATGCTCCAAGACCGTGTGGA
AGAGTTGGAGGAGAAATTGAGGTTGCAGAGCTCTGGTGAACAACCTATTG
ATAATCCAGAGGTTGATATCTTGAAGATGAAAGTGAGAGAGGTTGAGATG
AAACTGAAACAAAGAGATGAAACGATCCGCTCAATGAAGGAGAGCAAGAA
GACTGAGGAGAGCGCAGTGTTTGTCGAAGAACGAATCGTAGAAAAGGTTA
TGGCATCTGAACCAAAAATGATAATCGAAGAACGAGTCGTTGAGAAAGTT
GTGGTGAAAACAGAATCGCTAGCACCTCAGGAACCAGTTGTTGTTGTAGA
GCCCAACCCAAGAGAAGAGGAGTACCTGAAAATGTTGATCACACTTCGCG
ATACTTTCTACAGCGAATTACAATTGAAACCACAACAGCATGTACAAAAT
GGAAAGGGTCATTTTGAAGTCGTTTTCGAGGATCTACAGACTGTATTAGG
ATCCATACGACAGAAAGTGAGCAAGGTTCTTGAAGAAAGTGTGGTGGAAA
ACAATAAAGAAATTCAACGTGTGCAATcattgaaaaaacaaaacacttCC
TTGAAAGAGGAGATTCAAACCAAAACTGAAAACTATAATAACACCGTCAA
ATcacttgaaatcaaaaatgaagctTTATCGAATTCGGCCAGCATACAGC
AACAGTTTAATGACGAACTGAGTGAAAAATGTACGGTAGCCGAGAAAGAA
AGAGATGACATAAATGACAGAATGAAAGAATTATCACTGAAAATGTTGGT
AAGAGATTCAGAAGTGGAccgtttgaaaaatattcttgatgatttgaaga
aaagtaaaaaattgaagaaattgatgaaaaaagacaaaaagaaatcCAAT
TCGTTGAGTAATTTATTGAAAGCATAATGATGATGTTGATAAGAATAATA
ATGCTGTGAATGTGACTGAAACTTTCAGTTTTGTCTTGTGAATAATTTTG
AGGAAATATTAACTTAGATTttgtttgaagaatttttttttgttttgttg
aataAGAGGTAATTTAACCCTATTTAAAGTCGAAAACGTTTTGACAAATC
TTCTTTTCTCTTTAACCGATTAGGATGAAgagttatttttgttttatgcA
ACTTTCCTGAAAATTCCTAGCCCTCAATTTCCCTTTCCTGAGATTGAGTA
ATATTGTCATAACTACGACACCAGAACTAACAGAATGCTTTTGAATAAGC
TGCAGATCCTGTGTTTTTCACCTGCTCAAAATTCTTGTTGGATACTGTAT
CAAAACTATTCGAAAGAAGGAAATTGTGAAAGGAAATTCTAATAGCTTTA
ACATATCTTATTTTGAAACACTAGTAGAATATGTGCTAATTATTTTTAGT
ACGAATAAATTCTTTGCCCCGATTTTAAAATCCTAAGCTCTTTTCAGCCA
AAGGGTTTGTCATAATCTTGTTAAATAAGAAGGAATTAAGACTTTTTCTT
ATATAAGGTTAAATGTTCAATACTCTAAGCTAGGACATTTTACTGTAATC
TTTTTTTCCATGTTTAGACTAATCAGATGATGGGTCATGtttcgtttgtt
tttgtttagttTACATTCTTGTTATTGATGTGTATAGTTGTAACTTGTTC
TAGATGTCATATAATCATTCTTTATATAATACCATCTTATTATAAACAGT
AATATAATTCTTCATGTGTACCATTAAA Coding sequence (CDS) from alignment at sc0000080:508705..512932+ >TCONS_00007843 ID=TCONS_00007843|Name=TCONS_00007843|organism=Clytia hemisphaerica|type=CDS|length=1695bp|location=Sequence derived from alignment at sc0000080:508705..512932+ (Clytia hemisphaerica)
ATGGGTGAGACTCGAACGACACTGTTGGctggaaaaataaacattggaAG
AGAAGGAGAATCGAGTTGTTTTGATAGAATGTTGTGTGCGTCAATACTAC
AACGCGTTGATGATCAGACAGATCACAACCAGCGATTGAGTTTATCATCA
ACCGAACTCATGTCGCTCAGTGAAGAAATCAGTAAACTGCTTCAGCAGAA
AGACGAAAATGCACAACATGAACAGCTCATCAATGATCTTGAAAATCGAG
TCGACTTGTTGAACAATAAAGTCAATACATCAAAAGAACGTCATCAATCG
GAGCTTGAATATTTGAACATGGCTTTAGAAAATCGTACGGATGAGTTACA
GCAAGTTCAAGAGAAACATGATGAGAAGGAGGCTTCTCTTAAACAAATCA
AAAGACAGTTGCAAAGACAAGAAACGGAGATTGATCAGAAAGATACCACT
ATCAAACATTACGAGAAAGAGATTGTAGAGTTCAAAGAAGAAGTGGAGCG
CTTGAATCGTagattgaaaacattgaaaggtgaaaaagaaaaacatacta
AAGGAATTGAGATCGAAGAAAAACAGAATCGCATCGTGAAGTTTAATGAT
GATGTCGCTGTAAAGGTGTTTGAGGTCGAGGACCACACTGAAGCACTTCA
GAAAGATATGAGTCGGTTGCAGAAGGAAAACGAGAAATTGAAACGTAAAT
TAGATGAGTTGAAATGGCAAATGAAAGCTAAGGATATTATGATTAGCAAT
GGTGAAGATACTATGCAAGCTCTTGAGAATCAAGCGGAGGAGATCGAGAT
GCTCCAAGACCGTGTGGAAGAGTTGGAGGAGAAATTGAGGTTGCAGAGCT
CTGGTGAACAACCTATTGATAATCCAGAGGTTGATATCTTGAAGATGAAA
GTGAGAGAGGTTGAGATGAAACTGAAACAAAGAGATGAAACGATCCGCTC
AATGAAGGAGAGCAAGAAGACTGAGGAGAGCGCAGTGTTTGTCGAAGAAC
GAATCGTAGAAAAGGTTATGGCATCTGAACCAAAAATGATAATCGAAGAA
CGAGTCGTTGAGAAAGTTGTGGTGAAAACAGAATCGCTAGCACCTCAGGA
ACCAGTTGTTGTTGTAGAGCCCAACCCAAGAGAAGAGGAGTACCTGAAAA
TGTTGATCACACTTCGCGATACTTTCTACAGCGAATTACAATTGAAACCA
CAACAGCATGTACAAAATGGAAAGGGTCATTTTGAAGTCGTTTTCGAGGA
TCTACAGACTGTATTAGGATCCATACGACAGAAAGTGAGCAAGGTTCTTG
AAGAAAGTGTGGTGGAAAACAATAAAGAAATTCAACGTGTGCAATcattg
aaaaaacaaaacacttCCTTGAAAGAGGAGATTCAAACCAAAACTGAAAA
CTATAATAACACCGTCAAATcacttgaaatcaaaaatgaagctTTATCGA
ATTCGGCCAGCATACAGCAACAGTTTAATGACGAACTGAGTGAAAAATGT
ACGGTAGCCGAGAAAGAAAGAGATGACATAAATGACAGAATGAAAGAATT
ATCACTGAAAATGTTGGTAAGAGATTCAGAAGTGGAccgtttgaaaaata
ttcttgatgatttgaagaaaagtaaaaaattgaagaaattgatgaaaaaa
gacaaaaagaaatcCAATTCGTTGAGTAATTTATTGAAAGCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007843-exon-sc0000080-1491911889:508705..508746 | TCONS_00007843-exon-sc0000080-1491911889:508705..508746 | Clytia hemisphaerica | exon |
| TCONS_00007843-exon-sc0000080-1510915933:508705..508746 | TCONS_00007843-exon-sc0000080-1510915933:508705..508746 | Clytia hemisphaerica | exon |
| TCONS_00007843-exon-sc0000080-1575043694:508705..508746 | TCONS_00007843-exon-sc0000080-1575043694:508705..508746 | Clytia hemisphaerica | exon |
| TCONS_00007843-exon-sc0000080-1491911889:510382..512932 | TCONS_00007843-exon-sc0000080-1491911889:510382..512932 | Clytia hemisphaerica | exon |
| TCONS_00007843-exon-sc0000080-1510915933:510382..512932 | TCONS_00007843-exon-sc0000080-1510915933:510382..512932 | Clytia hemisphaerica | exon |
| TCONS_00007843-exon-sc0000080-1575043694:510382..512932 | TCONS_00007843-exon-sc0000080-1575043694:510382..512932 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000080 | supercontig | sc0000080:508705..512932 + |
Blast
The following BLAST results are available for this feature:
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