TCONS_00007631 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007631
Unique NameTCONS_00007631
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length577

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007631 ID=TCONS_00007631|Name=TCONS_00007631|organism=Clytia hemisphaerica|type=transcript|length=577bp
CTGATGTTGTTGATTTGTGTACAGTTCTCGATATAAGCAGTTCGTGATAG
TTTATTACAACTTTACTTCAAAATGGATCAAGACGTACGAAACAACATGC
GAGAACACAACGCTCATGGCGAACGGAGGGTTGATGAACACAATGCACAC
GGCGTGCGAGAAGATGATAATCATCAAGCTGTTGCTGAACCACAAATGGA
AGAAAATGGTAGTGCGCATGTGaagaatgaaatgaaaaagttgaagaatg
aagtcgaaaaattgaaaagagagAAAGGCCTTGAGAAATTGAAATTCGAA
AAGGACCAACTCaaaagtgagaaagaaaatgGAGTGTTGAAGGCTACTGT
GGACAAAATGAAACTTGAAAACGAACAAGTAAAAAAGGATTTTGAGATGG
AGAAGCTGAAAGCTGAAGTTGCTTTgttgaaaactgaaaaacagTTCGGA
TTGGATGCGAAAGTGGTCTTAGAACAAAAGTTGAAGGTTGAGGAAGAACT
GAGAGTTgttaaaactgaaaatgaaaagtttgatAAAGATACCAAAGCTT
TGAGGGATGAGttgatgaaattaaaaa
Run BLAST on NCBI

protein sequence of TCONS_00007631-protein

>TCONS_00007631-protein ID=TCONS_00007631-protein|Name=TCONS_00007631-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
MDQDVRNNMREHNAHGERRVDEHNAHGVREDDNHQAVAEPQMEENGSAHV
KNEMKKLKNEVEKLKREKGLEKLKFEKDQLKSEKENGVLKATVDKMKLEN
EQVKKDFEMEKLKAEVALLKTEKQFGLDAKVVLEQKLKVEEELRVVKTEN
EKFDKDTKALRDELMKLK
Run BLAST on NCBI

transcript from alignment at sc0000078:614330..617577-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007631 ID=TCONS_00007631|Name=TCONS_00007631|organism=Clytia hemisphaerica|type=transcript|length=3248bp|location=Sequence derived from alignment at sc0000078:614330..617577- (Clytia hemisphaerica)
CTGATGTTGTTGATTTGTGTACAGTTCTCGATATAAGCAGTTCGTGATAG
TTTATTACAACTTTACTTCAAAATGGATCAAGACGTACGAAACAACATGC
GAGAACACAACGCTCATGGCGAACGGAGGGTTGATGAACACAATGCACAT
GGTGTGCGAGAAGATGATAATCATCAAGCTGTTGCTGAACTACAAGTGGA
AGAAAATGGTAGTGCGCATGTGCAGAATGAAGTTCGAAAAGTTTCGAAGA
GAAGTGATTTCAGTATAATGTCAACGGAAGATGTTATATCAATTGGTTCT
CAAATGCTTCTCGAAACAGAATTTTGTTCCAATTATGAAAGTTGGTATAA
TGTTCTTCGACAAAGAATCGGTGTTAAGGAGACTGTTTGCTCGAAGAACT
GTTTAGTCACTAAACAACGTGACAGTATTTGGGTGTTTTGTATCGACATT
GCTGATTTGGTCAACAATCCAAGAGAATGGAGTCACGAAAAAGTGAGGTT
TGCGAAATTGCTCCATCCAAAGAATAACATGGAAATAAAAGACATACATT
ATAATGAGGGTACTGGTAAATGGTGGACTACTTCTCAGCGTCTACGTGAT
TACTATGTAGATGATTGCGAGTTCGTTTGTTTCGTAATGAAAAAACAATA
ACTGTGAATGTTTGTAGATGGTTGAATTTTACGTTGGCGTCATTGAGAAA
CTTGTTAACGAAATCGATATCTTCTTGATTTCCATTTTCATGGTCCACAT
AGACAGATGTTAGTGTCCACCGTTGGCAGATTAGTATTCTCTGTAAAACC
TTTTGTTCAACATTTTGTCACGATTTTTCTTAAAAAAATTATGCTAAATT
AAAGTCTCAATATAATTTGCAGTAGAGACAAAAAAGCTATAAATTTTGAT
AGAACTTGAATTAAATAGCGCTTTTGTGTTTGTTGAAAGGATAATCCGAA
GTGGAATATTATCAAGAAAGAGAAAAANTGTTCTTCGACAAAGAATCGGT
GTTAAGGAGACTGTTTGCTCGAAGAACTGTTTAGTCACTAAACAACGTGA
CAGTATTTGGGTGTTTTGTATCGACATTGCTGATTTGGTCAACAATCCAA
GAGAATGGAGTCACGAAAAAGTGAGGTTTGCGAAATTGCTCCATCCAAAG
AATAACATGGAAATAAAAGACATACATTATAATGAGGGTACTGGTAAATG
GTGGACTACTTCTCAGCGTCTACGTGATTACTATGTAGATGATTGCGAGT
TCGTTTGTTTCGTAATGAAAAAACAATAACTGTGAATGTTTGTAGATGGT
TGAATTTTACGTTGGCGTCATTCAGAAACTTCTTAACGAAATCGATATCT
TCTTGATTTCCATTTTCATGGTCCACATAGACAGATGTTAGTGTCCACCG
TTGGCAGATTAGTATTCTCTGTAAAACTTTTGCTCAAAAATCATATTCAA
CTGGCATGTCGGTACACCAGTGCAGGTATAATATAACATTTTGTCACGAT
TTTTTATGAAATTATGCTAAATCAAAGTCTCAATATAATTTGTAGTAGAG
ACAAAAAAGCTATAACTTTTGATAGAATTTGAATTAAATATCGGTTTTGT
GCTCGTTAAAAAGATAATCCGAAGTGGAATATTATCAAGAAAAAGAAAAA
GAAAAAAATAGGGAAATGAAAATGAAAATGAAGAAGAAGAAAATCAAGTT
CTTGTAGAATAGTGACTCATTTTTTTATCAGAAACTCTTTAATCTTAAAA
CGTATTAATGAACTCCCTGAATTGACTTGATAAAGGGCTCTTTTTGTCGT
TTTTTGATGGTTTTTTAAGTCAATCGGTGATAAATTTTGGGCCATATCTT
TCGATTGAATAAATTTTTTTGATTTTTTTTTAACATTAATGAAATTGTTT
CAAGATTAATTGAAAAAACTACCCCAAAGTTTTAACATAAGAAGGGCGTG
TGCCAAATTTCAGCTCCTTAAACCAATTATTCCGCTCTCTACGCTGTCCC
AAAGTTTGTGGACAAACAAACTAACTCACAAACATTCTGAGATTCTAGCT
CAACTGAAGTTGAGAATAATTATTATTGTAAATTATTTTGCACAAGTGTC
ATGCAAGTGCAATGCATCACTAACTTTGTCTTTCGCATTATGTTGATGTG
GAAGGTTTTAAGCCATGTGTGGCTCTAGTTGATCTTAATTCAATGACCTA
CTGTACTGGGATAAGCAAAAAGGTCCTTCCCAGCTTGCACACAACGTTGT
TTCAACGTTTATCTAACGTCATAAGGACGTCGTGGATGTTAGAAAAACGT
CGAAACAACGTTGCGTGCCAGCTGGATTATGCATGTGTTTAAACTGTAAA
TTTGAAAATTCCCTCTTGTACTGGTATGTCTGTACTTGTAGCTCCTTTTT
GTTTTGATAATAAACAGTATGATTCATTTAACAGTGTCGTGTTTCTACTT
CAGTAGAAGTTTTTTACAATATAGTTGCGTCATTCGTTATCTTAAAAAAA
ATACAATGAAAGAGAGAATGGAAGCTATTGTCTCCGCTAAATGTAACGCC
ATATACTTGTGGTTATTTTTATTTGTTTCCATCGAAAGCTTAGCTCTGAC
ACTTTAGTATTTTTTGTTTACTTTTGAACGTTTTATAAGAGGTTTTTATT
TTGTGCGTAGAGGTAGAAAGCTCATTAAGCAAAGTTTGAGTTTACAAAGT
TTATTGGACGGCTTTCAAAATGGATAATGCGCTACGAAATTTTATCACCA
CGAACGCACAAGACGACATGCGAGAACACAACGCTCATGGTGAACGGAGG
GTTGATGAACACAATGCACACGGCGTGCGAGAAGATGATAATCATCAAGC
TGTTGCTGAACCACAAATGGAAGAAAATGGTAGTGCGCATGTGAAGAATG
AAATGAAAAAGTTGAAGAATGAAGTCGAAAAATTGAAAAGAGAGAAAGGC
CTTGAGAAATTGAAATTCGAAAAGGACCAACTCAAAAGTGAGAAAGAAAA
TGGAGTGTTGAAGGCTACTGTGGACAAAATGAAACTTGAAAACGAACAAG
TAAAAAAGGATTTTGAGATGGAGAAGCTGAAAGCTGAAGTTGCTTTGTTG
AAAACTGAAAAACAGTTCGGATTGGATGCGAAAGTGGTCTTAGAACAAAA
GTTGAAGGTTGAGGAAGAACTGAGAGTTGTTAAAACTGAAAATGAAAAGT
TTGATAAAGATACCAAAGCTTTGAGGGATGAGTTGATGAAATTAAAAA

Coding sequence (CDS) from alignment at sc0000078:614330..617577-

>TCONS_00007631 ID=TCONS_00007631|Name=TCONS_00007631|organism=Clytia hemisphaerica|type=CDS|length=1008bp|location=Sequence derived from alignment at sc0000078:614330..617577- (Clytia hemisphaerica)
ACGGCGTGCGAGAAGATGATAATCATCAAGCTGTTGCTGAACCACAAATG
GAAGAAAATGGTAGTGCGCATGTGAAGAATGAAATGAAAAAGTTGAAGAA
TGAAGTCGAAAAATTGAAAAGAGAGAAAGGCCTTGAGAAATTGAAATTCG
AAAAGGACCAACTCAAAAGTGAGAAAGAAAATGGAGTGTTGAAGGCTACT
GTGGACAAAATGAAACTTGAAAACGAACAAGTAAAAAAGGATTTTGAGAT
GGAGAAGCTGAAAGCTGAAGTTGCTTTGTTGAAAACTGAAAAACAGTTCG
GATTGGATGCGAAAGTGGTCTTAGAACAAAAGTTGAAGGTTGAGGAAGAA
CTGAGAGTTGTTAAAACTGAAAATGAAAAGTTTGATAAAGATACCAAAGC
TTTGAGGGATGAGTTGATGAAATTAAAAATGGATCAAGACGTACGAAACA
ACATGCGAGAACACAACGCTCATGGCGAACGGAGGGTTGATGAACACAAT
GCACACGGCGTGCGAGAAGATGATAATCATCAAGCTGTTGCTGAACCACA
AATGGAAGAAAATGGTAGTGCGCATGTGAAGAATGAAATGAAAAAGTTGA
AGAATGAAGTCGAAAAATTGAAAAGAGAGAAAGGCCTTGAGAAATTGAAA
TTCGAAAAGGACCAACTCAAAAGTGAGAAAGAAAATGGAGTGTTGAAGGC
TACTGTGGACAAAATGAAACTTGAAAACGAACAAGTAAAAAAGGATTTTG
AGATGGAGAAGCTGAAAGCTGAAGTTGCTTTGTTGAAAACTGAAAAACAG
TTCGGATTGGATGCGAAAGTGGTCTTAGAACAAAAGTTGAAGGTTGAGGA
AGAACTGAGAGTTGTTAAAACTGAAAATGAAAAGTTTGATAAAGATACCA
AAGCTTTGAGGGATGAGTTGATGAAATTAAAAATGGATCAAGACGTACGA
AACAACATGCGAGAACACAACGCTCATGGCGAACGGAGGGTTGATGAACA
CAATGCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004307XLOC_004307Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007631-proteinTCONS_00007631-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007631-exon-sc0000078-1575043694:617430..617577TCONS_00007631-exon-sc0000078-1575043694:617430..617577Clytia hemisphaericaexon
TCONS_00007631-exon-sc0000078-1575043694:614330..614758TCONS_00007631-exon-sc0000078-1575043694:614330..614758Clytia hemisphaericaexon
TCONS_00007631-exon-sc0000078-1510915933:617430..617577TCONS_00007631-exon-sc0000078-1510915933:617430..617577Clytia hemisphaericaexon
TCONS_00007631-exon-sc0000078-1510915933:614330..614758TCONS_00007631-exon-sc0000078-1510915933:614330..614758Clytia hemisphaericaexon
TCONS_00007631-exon-sc0000078-1491911889:617430..617577TCONS_00007631-exon-sc0000078-1491911889:617430..617577Clytia hemisphaericaexon
TCONS_00007631-exon-sc0000078-1491911889:614330..614758TCONS_00007631-exon-sc0000078-1491911889:614330..614758Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000078supercontigsc0000078:614330..617577 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.134832	0.0054774	0	0	0.13001	0	0.517015	0.314626	0.432782	0.375539	0.124575	0.326026	2.06171	0.60318	1.76056	2.96924	1.7167	3.21969	4.70366	3.50678	2.48462	1.91006	0.984281	1.78575	0.116116	0.651399	0.528772	0	0.598121	0.250813
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007631 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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