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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007544 ID=TCONS_00007544|Name=TCONS_00007544|organism=Clytia hemisphaerica|type=transcript|length=1317bp
AGATGAAACAAGAAGAAGTATTGGGGTATGGAAGCACGTGGTTTTCACTT
TGGTTGTGGAAGATCATGAGTGCTGATGCCTTCATGCACTACACATTGAT
CGCACTCTTCTTTGGCAAAATCTGGGCCTGGTTGAGGTTCAATCTGTACT
TTACCATTCCTAACGTCATTATTGTGTCCATGATTTGTCAAATCCACCTC
ATGCAGatgcGTTATCTACTTGGTGTATCTCACTAAAAAATCAATGATGC
AAAATCCTTTCACCACATCTCATCGTCCACGAATcaaatcatgacgtcat
catttccAGAACCTCATCGTGATGTCATATTTGTATTCGAGGCAAGATGC
AAAAGAATTCCGTGTACATATACCGAAATGATGTTTGATGTTGATTAACG
ACAATTAATAATTGGATGCTgctaaaaataataaagaacAGATGAAAAGC
AAATATCTACATTGTTGCTGTCATGTGTCGCCATAGCTGTCTATAACGAC
CATTATCCATACACTATTATATTATCTTCATTAGCCTCAATACGATTCTA
ATTAAATGATTACTCATCTAGCCTACGTAATCTTACGACAAACTTGAGTC
ATTTATTGTCATTTCAAATTCTATCTATGCGTTTCTACTAAAATTGGTGT
GATTCTATCTTTCTTTTGTTCTCTCTTAGGGTTTTGAATTTTCTCCACAA
ACCATAAGGTCTAATGAGTAATTAATCTTATAAGAACTCCATCCCTTGCT
CTCCTTCATCACGATTTGAAATATTACGTCATGTCTGTGGGATTGGTTTa
gaattttttgaatgttttgattttttatctctctctttttctctttcgTG
ATAAATTGAAGGTGATTTATCAAGCCAAAATCTGAAATAACTTTGGATAA
TGTGTTACGAAACAGTCCCAACTTAACACTCCCTTCTCTTTTATACCAAC
ATTTTTCATGCAAATTCGGATTCAATGAGGGTACATAATTGGAGGGTTAA
TACGAGCGTTGTATTCACTCTGACTTACACATTTTCATCCACaataattt
ttatcaatttttcccgattatattttttctctcaCTTGTATGTGTTTTGT
AGTATTAAACATATTTTTAATTGTATTAAACTTGAAGTATAGAAACGTGA
AGTAAGAGAAAATGCTTTAAATTCCAAGAGCAAAACTTAATATAACAAAA
ACAGAATCACTTGGCAATTATCGTCTTTTATACCTGGTCCTATTGGGCCC
TCTGAAAGAGCACAAGCAACTTTTTATTGTATCACAAAAATCcagtttta
aacatttttaaatctGC Run BLAST on NCBI transcript from alignment at sc0000078:54936..61140+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007544 ID=TCONS_00007544|Name=TCONS_00007544|organism=Clytia hemisphaerica|type=transcript|length=6205bp|location=Sequence derived from alignment at sc0000078:54936..61140+ (Clytia hemisphaerica)
AGATGAAACAAGAAGAAGTATTGGGGTATGGAAGCACGTGGTTTTCACTT
TGGTTGTGGAAGATCATGAGTGCTGATGCCTTCATGCACTACACATTGAT
CGCACTCTTCTTTGGCAAAATCTGGGTAAGGTTCCTATTTTGAAGTGCTC
TTGCCGAAAAGGTTTTAAAGGGTATAGATATAATTGTATTGGAGTAGTAG
AAgaggggttcgattcccacttggtgctgtgattcacttggcaagtgaat
aaaCCTTCGCCCAGGTCAACCAATGCCAtatgaggggaattgggtaccaN
ATAGATACACCACCAGTGAAGCGCTCCAATTGGGGTTTCTATGGCTTTTT
TGCTCTCATGACATATTTCATTTGGAGTGATTTGGCATTTTTCGGTGAGA
TGAGTTCAGAACAGAATCACTTGAGCATGCATTTACGAAATGGGAGTGCT
CTTGAAAAAAAGACAATCAAGTTACGTATGCAAGANGAACCTTCGCCCAG
GTCAACCAATGCCAtatgaggggaattgggtaccacgctctgatacaaga
gtatggggagaTATGCCTGACTCTGTAGTGTGGTTGCTAATACTTGTCAG
GTTCGACCATTCGAGGACGCACTGTCCTCCCAAGTTGTTCGAGTATACAC
CATCAGCTCTGTGTGTGTTGCGAGCACGAGTTGGCAGAGTCGGTTAAGCG
CAGTGATTTCCCTATCCTAGGATAGTAGGAAATTACTTTCTTTTCCTCAT
AGGATGTAATTGTGATCAGATTTTGATACCTTTAGACCTTAAATAGCCAA
CCTTGACGCTTAATTTTGAGAATGTTTCATGACAACAcatgtcatttttt
aaatccAAATAGATCTGTCATACTGTCATCGCCTTTATATCCTGGGAATT
TAACTTTACATAAAGCTTATCTCCTTCCTTTGAAAGTTCccaaattttgc
gaaaaaaatcACGTCCAGGTATAGCTTCTTAGTCTCGAATTCCAGATCAC
TATTCTTTTAACACAAAACGTAGGAGCAATCCTGCctcaaagtcaaaaag
aagaaaaaaagccgTTCGGGAAGTTGGAATAGTTAATTCAAACActcgaa
aagtaaacaaacttctAGGTAGGTTTTTTCTACTACTGTAAAAGAAGCTT
TTGAGTAAATCTGATGTGAATTAGTAGTCTAGACTTTTTCAAATATATAG
TCTGATAAAagaattttaaacaaattaaCTAAACGGTTCCcctcgtcgca
aacgccggtttagcttTAATTGgaattttaaatataaaataaaaaccaca
aCGTATCATCAACTACTTTTTCGAGAAAACAGTAAGATTTTTTGTCTTAA
AACTGCACTAAATCCTTCTTTCATACTCGAATCAACTcctggcaaaattt
gagaagtAGCAGCTCAGCTACCATCTTGCGTTACACACATTTTTCGTAAA
CTcctttagtatagtaagatttttaaaaacatagtACATACAAAGGCATA
CATAAAGTTTTCTTGAAAACATTAAGATTTATATCAGGAAGAAATCATCC
CGTTGCTCGATACAATTTTCGAAAGTTAAATTTGTGAAGGTCAAATAGAT
TAACGTTTCCATGCCAACTGGAAATTTGTTTTCTCTTGTTCAAAAATGAA
AGGCgcttatttgaaaatattcgcCCTCGTCAGTGTAGGCCTTCCTTAAC
CTAAAAAGCAGTCAGTTTGTCATTGTTTTTCTTCCAGGTTCGACTATTCT
TTCCCAACATTTATGAATCTTAATCATCATTTTTCATATGTTGTTTtcga
tgaaaataattatttcacaATGTCTCATTCTGTATATTCCAAAGGAAATA
TTTCTCTGGAACCTTAAAGCAATCCTCTGATGACGTCCAAATATTGACCC
GTTAATCAAGTTAATTTATGATGTCCCATTGCTTTGCTCTTAGTTTGAGG
ATTCTGATACTATTATTCAGTGCACCTTCAGTTTGGCTATGTACCGATAT
ATTATAGAGATTTGTAGCATAAAATTTGCATAAAGCTCTTATTTTAAGGT
GTGACTAAATCCATTCTCAAACTCTTGCTTTGTTTGGCTTATTCATAAAA
GAGTTTTTTTTCCGGTATCTTGGAAAACAGAGCAGGCTGGAGGGTCCAcg
ccatgaaattgaaagtgggggCCAATGAATATAGatactaaggaggcgca
accaaaaaattttactttgcaAAGAAGTTGGGGGCATGGCCCCCTGGCCC
CCCGGTGGCGTGGGCCCTGGGCTGATAATTCGTAAACAATAACACCTCCA
GCGTTTCTGATAATGTTAGCATCAAGTGTAGACTTTTATATCTTTTTCTT
CAGGCCTGGTTGAGGTTCAATCTGTACTTTACCATTCCTAACGTCATTAT
TGTGTCCATGATTTGTCAAATCCACCTCATGCAGGTAAGAAAACTAtcta
ttgggccattccattttatgtcCATACAGAgaggtggacgaacatttcca
gggggtaatcggaaaagaatttttcagggTGTCTAAATGAGTAATTTTTA
ATTCTTCCAGGAGGTAAaactttattctaaaatttccaggggtaaaagac
tcattttagttcgtccaaccttacttttaaggtatgaaaagattTCTCCC
AAGgcttcttttgcaaattttgccattttccagggggtatctacacattt
ctaagaatctttttttaatggaacagcccatttatTCGTATGGTTTACAA
AGGGTGAAACAGGGTAAGGTGTTCTAAGTTTTGAATAAGCTGTCGCGAAA
TATAATACATTTTCATTGACTCATTTGACACTGTAAAGTTCCACCCCCTT
GGACGGCTAGCCACAGGGATTGCTAAAAGGACAAGTTGGAAGTACTGTAT
TTTAGCCTTGGGCAAGTAGGGATCTATTGATGTAAATGGTcagctttttc
ttttaaaattcatcTTACTGATAAATCCTCATCAAGtgaattcttttaaa
attcatcTTACTGATAAATCCTCATCAAGTGAATAAGGAGGTACATACGA
AAGACGGACATTTTTTCGAATTCCGGGTCCTGTATATATACAGGCAGCCT
TTGTTGACGCAACTTTTGAAAATCTGAAAGATGACCAAAACCTACTTTTC
TCGTGAAAGTCCCCCTATAAAACCCTGCTTTTTTAAAGGCGTTTGGTGTT
ACTTATCGTTAAGCGAAACCGCTCCTGTGAATTTTGAGTAGTTTCAGATG
CGAATCAGTGATAATGCGAGTCTATTTCGAGGTAAATAAATGGTTTTCCG
GACTTATCTATAAAATAGTACGAAAATCCGTTTGCTTTACGTCAGCGTCG
TTACCGAGTGCGTTAAGACACACACTTTTCAATGGAAGTCTGCACGCCAT
ACTCGAAATACTTTATAAGCGGATGTCTACGAACGAAGCCAAAATGGCTA
GAAGCGAATATTTCTCCTTTCTCCTTTTAGAATATACGCCGTATTTTTTA
CGACGGATTGAATTCagcggtttctttgttttcgagtggtatatttttta
aatctagcaataaaatttacttttaatCTTGAATTCGTATAAAAACGACG
TGGGCTGCTCAAGACCGCGCAACTTAGAGATTCGCTTCCAGCCCTACGGG
CTTTTACTTGTTGGTGTCTACTACCACAGACTTGTAGACCTCGTCTGTTG
ttttattgatttgtcttttcTATCCTTTCATTTATTCATTAACTTTTAAT
ATAACATAGCATTTCACATATTTCTcttcaaatattaaaaacaaacatta
cACTGTGTTTCACGCGCAAGGCGATCATCAGGATGTGGAGTACATAGCAT
aaaataacaatagggagacactgtcctgatatgaaatatgtgtctgatat
gaaacgggaacttTTATGTAAttaaataaaacctttaagtgaAAAAACCT
CAGAACACTGTTCACTTCATAGCTTGGTTTACACTAGCGAAAGGACTTTT
CATCCCTCCTCTTTGGGAAAGAATAAATGTTAGAAGGTGATTAAAGTCGC
TCAAACATTTCCATTCTCAAACTGTTTATCTTTCGTTATTATTGTGCGGT
tcagaaaaaataaactttcattTCTTTTCTAAACAGTGGACGGGGTAAAA
CTTCCCTTTGAGACGTTAATCCACGGGACTTTTAGTGGTCATACAGAAAG
ATTAAACCATTCATGATCGGCTTATTATTTGATGAGATCCAATCTCTTAA
AAAGACCTCTTTATACAATGTATTTTATCATGTTTTGACTTCTAACTATG
CATTTATCTATCTGAAGCCCTTTAGctctttcccagctggcacacaacgt
tttttcgacgtttatctaacgttcataacgtccatataacgttagatgaa
cgttaaaacaacgttatgtgccggTTGGGATTGTGTTTTACAGTTTTACA
GGGTTTTATGACATTGCTTTATTAAGCCAATATAAGAATAGGTGTACTTT
ATCCATTATTTGGCTTGATCGATCAGGGAgtagacgaaccttttcaatTC
AAGCCAAGAGAAAATTCTTGAAGACCCGTGGATAGCCCCTGGAAACTAGG
CAAAATTTCCGAAATACTAGGAAAAATGCTTCCTCATTTACTTTCTCATA
CCTTGAAATGAGGGTGGACAAACTTAAATCAGTCCTTCATCCCCTGGAAG
TTTTAGAATAACTCTTAACCCGCTGGCACTTCTTATCGGATTACCCTCGG
AGTTGAGAAATGGTCATAAAATTCCTTGTTTTAAATGGGCTAGCATTTCC
AATTTTGTTGACATTCTTAGTGGGAATgagagctcagaataattttcCAA
TGGATTTTAAGAGTATTTTTCTGACTGATTATTGGGCGTTCTGACGGACT
ATTTGGGCGTTTTTTTCAGTGGATTAGGGTCTCGCCGGGTCAGTGATATA
ACATGTTCAGTAGGAATGTCTGAAGACCAGGAACTGCTATTTTGGTCTCT
TTTTATTCCAGAGGGTACATTGGTGTGTTATttcatttctgattttttat
gtAGGACATCAATGACGATATTcattcgttttttttattttcagatgcGT
TATCTACTTGGTGTATCTCACTAAAAAATCAATGATGCAAAATCCTTTCA
CCACATCTCATCGTCCACGAATcaaatcatgacgtcatcatttccAGAAC
CTCATCGTGATGTCATATTTGTATTCGAGGCAAGATGCAAAAGAATTCCG
TGTACATATACCGAAATGATGTTTGATGTTGATTAACGACAATTAATAAT
TGGATGCTgctaaaaataataaagaacAGATGAAAAGCAAATATCTACAT
TGTTGCTGTCATGTGTCGCCATAGCTGTCTATAACGACCATTATCCATAC
ACTATTATATTATCTTCATTAGCCTCAATACGATTCTAATTAAATGATTA
CTCATCTAGCCTACGTAATCTTACGACAAACTTGAGTCATTTATTGTCAT
TTCAAATTCTATCTATGCGTTTCTACTAAAATTGGTGTGATTCTATCTTT
CTTTTGTTCTCTCTTAGGGTTTTGAATTTTCTCCACAAACCATAAGGTCT
AATGAGTAATTAATCTTATAAGAACTCCATCCCTTGCTCTCCTTCATCAC
GATTTGAAATATTACGTCATGTCTGTGGGATTGGTTTagaattttttgaa
tgttttgattttttatctctctctttttctctttcgTGATAAATTGAAGG
TGATTTATCAAGCCAAAATCTGAAATAACTTTGGATAATGTGTTACGAAA
CAGTCCCAACTTAACACTCCCTTCTCTTTTATACCAACATTTTTCATGCA
AATTCGGATTCAATGAGGGTACATAATTGGAGGGTTAATACGAGCGTTGT
ATTCACTCTGACTTACACATTTTCATCCACaataatttttatcaattttt
cccgattatattttttctctcaCTTGTATGTGTTTTGTAGTATTAAACAT
ATTTTTAATTGTATTAAACTTGAAGTATAGAAACGTGAAGTAAGAGAAAA
TGCTTTAAATTCCAAGAGCAAAACTTAATATAACAAAAACAGAATCACTT
GGCAATTATCGTCTTTTATACCTGGTCCTATTGGGCCCTCTGAAAGAGCA
CAAGCAACTTTTTATTGTATCACAAAAATCcagttttaaacatttttaaa
tctGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007544-exon-sc0000078-1491911889:54936..55060 | TCONS_00007544-exon-sc0000078-1491911889:54936..55060 | Clytia hemisphaerica | exon |
| TCONS_00007544-exon-sc0000078-1510915933:54936..55060 | TCONS_00007544-exon-sc0000078-1510915933:54936..55060 | Clytia hemisphaerica | exon |
| TCONS_00007544-exon-sc0000078-1575043694:54936..55060 | TCONS_00007544-exon-sc0000078-1575043694:54936..55060 | Clytia hemisphaerica | exon |
| TCONS_00007544-exon-sc0000078-1491911889:57289..57369 | TCONS_00007544-exon-sc0000078-1491911889:57289..57369 | Clytia hemisphaerica | exon |
| TCONS_00007544-exon-sc0000078-1510915933:57289..57369 | TCONS_00007544-exon-sc0000078-1510915933:57289..57369 | Clytia hemisphaerica | exon |
| TCONS_00007544-exon-sc0000078-1575043694:57289..57369 | TCONS_00007544-exon-sc0000078-1575043694:57289..57369 | Clytia hemisphaerica | exon |
| TCONS_00007544-exon-sc0000078-1491911889:60030..61140 | TCONS_00007544-exon-sc0000078-1491911889:60030..61140 | Clytia hemisphaerica | exon |
| TCONS_00007544-exon-sc0000078-1510915933:60030..61140 | TCONS_00007544-exon-sc0000078-1510915933:60030..61140 | Clytia hemisphaerica | exon |
| TCONS_00007544-exon-sc0000078-1575043694:60030..61140 | TCONS_00007544-exon-sc0000078-1575043694:60030..61140 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000078 | supercontig | sc0000078:54936..61140 + |
Blast
The following BLAST results are available for this feature:
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