TCONS_00006430 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00006430
Unique Name	TCONS_00006430
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1788

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000067:462145..465944+
coding sequence from alignment at sc0000067:462145..465944+

transcript sequence

>TCONS_00006430 ID=TCONS_00006430|Name=TCONS_00006430|organism=Clytia hemisphaerica|type=transcript|length=1788bp
AACCGATCAAAAAtagaattttcttgaaaaaaatatcaatggtTAAAAGT
AACAAACGATTTTGAAGGTCTTTAATATGATATACTTTATTGATCTTAAA
GATGACACAGAAATGAGAATTTTGTAGTTTTTGAATGGCTTTGGATTTTG
CAGTGGGATGTATTGGAGGATTTGCAGGAATTCTGGTTGGACATCCCTTT
GATACAGTTAAGGTTCGTTTACAAAGTCAAGATCAAAAGAACATCAAATA
CACCGGAACATGGAATTGTTTCAGTCAAATTGTCAAGAAAGAATCGATAT
TTGGTTTGTATAAAGGAATGCTATCACCATTATATGGCCAAATCGGTATC
AACGCAATTGTATTTGGTATCCATGGAAATGTATTGAGAGCTTTGGGTAA
TCAAGACATCAAAGGACAATTTATCGCTGGTTCTATAGCCGGGGGTGTTC
AAAGTTTCATAGCCTCGCCGATGGAGTTGGTCAAAATCAGATTTCAAATG
CAAGGAGAAGGCATTTCTTCTAAAGTCAAGGACACTAAGAAAGATAAGCG
ATATTTTTATAAATCACCTTTAGATTGTTTGCGAAAGATTTACAAGTACG
AAGGAGGTTTCCAAGGAGTGTTTAGAGGGATATCGCTAACGTTGTGGAGA
GAGATACCATCTTTTGGTGTCTATTTTGCATCTTACGATTATCTGTGCAG
ACAAACAAATGCAGTGACGGAAAACACTGTTAATATTtggaaacttttgt
tttgtgggGGAACAGCTGGTATTGTATGTTGGATTGTAACCTACCCAGTA
GACGTTATAAAGACGCGACAGCAAATGGATGGTATGGGCGCTCTAAAGTA
TAAAGGTGTCCTAGACTGTACTATAAAGAGTGTACAAGAGGAAGGATATA
GTGTACTATTTCGTGGTCTGAATGCTACGTTGTTAAGAGCGTTTCCAACA
AATGCTGCCACTTTAGCTACCGTTACGGTAACATTAAAATTACTAGGTCA
TAGCTGATGTTGGCTTGGTGGTAAGATTGTGTTGTACGTAGAGAAACAAC
CCTGTGCCACACTAAAATCAGCTGGCTAGATATTCAAATGGATTAACGTC
ACTATTCAAACTTCAAGGACAACAAGCATGAGATTTCCAATCCACGTTTA
GTTTCTTAATTTCATTTGCATCCGGGCAATCGATTTAAAGTGACTGTCTC
AAATTGAACCCTAACAATGTAGAAAGAAATTAGCCGAATCTTAgccaatt
cttttgaaaattattcctCCATTATAGTAAAAAATAGTCATATTTTTCTT
ATACAGTGGAGCCTCCATAACTTGAATCCCTACCACACGTATATCAAACG
TTTCTATAACTCGATCCTTCTAGTTAACAATCCTTATAGACCTTACTTCA
TGACTCGAAATCTCCAACTggacaaatttgtgttcccggTGCTTGTTCAA
GTTATGGAAAACTCCACTTGGCCGTACCTACGGTAAGTCATTTAACTCAA
GCGCCAGCTCCCAGAATCACCGCAACCAGCCGAATGTAtagggtcactga
gacagggttgtGAATAAGGATGATCAGAATCATGGTACATGAATTGAAGC
TTTGTAGAATTCTTTATGAAATTGGTATTTATAAAATATGATGTTTACCa
ttattatttacaaattttagaaaataaacctttttcacaactctcataaa
aaataatgctgaaaattttttatcttagCCTGGAAAATTGGCACTGTACA
AATATCACGTAAAAGTGCTCTCCTCTCACGTAATGATG

Run BLAST on NCBI

protein sequence of TCONS_00006430-protein

>TCONS_00006430-protein ID=TCONS_00006430-protein|Name=TCONS_00006430-protein|organism=Clytia hemisphaerica|type=polypeptide|length=290bp
MALDFAVGCIGGFAGILVGHPFDTVKVRLQSQDQKNIKYTGTWNCFSQIV
KKESIFGLYKGMLSPLYGQIGINAIVFGIHGNVLRALGNQDIKGQFIAGS
IAGGVQSFIASPMELVKIRFQMQGEGISSKVKDTKKDKRYFYKSPLDCLR
KIYKYEGGFQGVFRGISLTLWREIPSFGVYFASYDYLCRQTNAVTENTVN
IWKLLFCGGTAGIVCWIVTYPVDVIKTRQQMDGMGALKYKGVLDCTIKSV
QEEGYSVLFRGLNATLLRAFPTNAATLATVTVTLKLLGHS

Run BLAST on NCBI

transcript from alignment at sc0000067:462145..465944+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00006430 ID=TCONS_00006430|Name=TCONS_00006430|organism=Clytia hemisphaerica|type=transcript|length=3800bp|location=Sequence derived from alignment at sc0000067:462145..465944+ (Clytia hemisphaerica)
AACCGATCAAAAAtagaattttcttgaaaaaaatatcaatggtTAAAAGT
AACAAACGATTTTGAAGGTCTTTAATATGATATACTTTATTGATCTTAAA
GATGACACAGAAATGAGAATTTTGTAGTTTTTGAATGGCTTTGGATTTTG
CAGTGGGATGTATTGGAGGTAAGTAATCATTTCATTGCAATTGTTGTTTT
CCTTGATCTATTCCTTAAAAACCTTGTTCATTGTGTTATTTCAGGATATT
GAATATCCAGCTCTGAAAGGTAATGGTATTAGTCCTGGCTGGCGCCCGAC
CTAGGTCAGATAGGTTTTGAAAGAAATAATAAAGGCGTATTTCAAGCCAT
CAGAAAAACTGAGAATATGATAGTGATTCTTTACAAGTGCTGGACAAACT
TCGTCAAAATATGGATTTTTACAGCTAAGAAGACGCAAATTTAATCGCTA
ATGGTGTCAAAGGTTTGCAAAGCGTTAAAAAGCCAATTGTGTAGTCGATT
TTGTGTTTCTCTTTGATAGATTTAACGATTTGAGAATGAATTTGTTCATT
GAATTTGTTCACTTTAGGATTTGCAGGAATTCTGGTTGGACATCCCTTTG
ATACAGTTAAGGTGAGTAAACTCCTAAATAAGATATGTGCTATTAATGAG
GCTAAAATTGACTGGAAAGGAAAGGATTTTGAGATCAAAGTTTTGCTCAC
ACTGTACTTATTGTCTTGTCTATATTTTTGTTTGAGATTAAAAGTGCTCT
GAAAGGGCGACTAGGGTTGGAGTTGCTGAGTATGTTTTCTCTAGACTTCC
GAATCTTTAACAATCTAGACTGCAAGAGACTTATACCGAagtttgtttct
ttcttttattcaaatttttttccaatttttggagCAATCGCTACTCTTTT
GACTACCGGCCATTTTTTAACTTCCAATGACTTCCCTGAGTATATCCTtc
tgaggggggggggtgtttaaGCAATCAAAACtcttatctggtaccagatg
tgggAATTTTCGATGGCACGCTTTGCTCTAAAGGTCAGTAATATCTTTTA
GTAAATTTGGGTAAAATGACCTGTACCTTTAGAGCCTTATGCGGCCACAA
GTatgccatcggaatatcagatagcCAAAACTCCATCTTACCAATCCATT
TGCTGTCGTTTGTTTAGGTTCGTTTACAAAGTCAAGATCAAAAGAACATC
AAATACACCGGAACATGGAATTGTTTCAGTCAAATTGTCAAGAAAGAATC
GGTACGATATCTTTACTTCATAAGATCCCATTCAGCCCCAATCATAGGTG
ATCCTTGCATGTATCAGACGAGCACGGCTTTTCCTTGACACCGTTCAGAT
TCAGAGTGATAAAAATGcgcgtgttgggatagagaCGGGCTAAGGTTATC
CAAGTTGCATTTGCAGTTATACACTCACTGGGATAATTTTGCATTGAGgt
ttttttaaagataattttaCCGCCTGAAGGAACGAGAAGCCTCTTGGAGA
TTTTCGCAACGAGGATTTTTTCCCTTCAACAACGAAGACATCCAGTAGCC
AGTAAATATAGGGACCCTGCTGCTTTCGATTacattttttggcaaaatat
aatACGTGGTTTCTAATGTTTTGGTTGAACAACCAGGTCGGATCATCACA
TTCGCCTTATATCTTTAGATTAGAGCCTGGCGCGGAAGAACTGCGAAATT
TTCAAACCCTATTGGTTATCAAACTATGAAAAtgagctttttcagaaaaa
tattgaatatgggggtggaggatataatattttttggaaatttacccccc
cccccccccacNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGAAACTTAACTTCGTTTTG
ATTTTCAGATATTTGGTTTGTATAAAGGAATGCTATCACCATTATATGGC
CAAATCGGTATCAACGCAATTGTATTTGGTATCCATGGAAATGTATTGAG
AGCTTTGGGTAATCAAGACATCAAAGGACAATTTATCGCTGGTTCTATAG
CCGGGGGTGTTCAAAGTTTCATAGCCTCGCCGATGGAGTTGGTCAAAATC
AGATTTCAAATGCAAGGAGAAGGCATTTCTTCTAAAGTCAAGGACACTAA
GAAAGATAAGCGATATTTTTATAAATCACCTTTAGATTGTTTGCGAAAGA
TTTACAAGTACGAAGGAGGTTTCCAAGGAGTGTTTAGAGGGATATCGCTA
ACGTTGTGGAGAGAGATACCATCTTTTGGTGTCTATTTTGCATCTTACGA
TTATCTGTGCAGACAAACAAATGCAGTGACGGAAAACACTGTTAATATTt
ggaaacttttgttttgtgggGGAACAGCTGGTATTGTATGTTGGATTGTA
ACCTACCCAGTAGACGTTATAAAGACGCGACAGCAAATGGATGGTATGGG
CGCTCTAAAGTATAAAGGTGTCCTAGACTGTACTATAAAGAGTGTACAAG
AGGAAGGATATAGTGTACTATTTCGTGGTCTGAATGCTACGTTGTTAAGA
GCGTTTCCAACAAATGCTGCCACTTTAGCTACCGTTACGGTAACATTAAA
ATTACTAGGTCATAGCTGATGTTGGCTTGGTGGTAAGATTGTGTTGTACG
TAGAGAAACAACCCTGTGCCACACTAAAATCAGCTGGCTAGATATTCAAA
TGGATTAACGTCACTATTCAAACTTCAAGGACAACAAGCATGAGATTTCC
AATCCACGTTTAGTTTCTTAATTTCATTTGCATCCGGGCAATCGATTTAA
AGTGACTGTCTCAAATTGAACCCTAACAATGTAGAAAGAAATTAGCCGAA
TCTTAgccaattcttttgaaaattattcctCCATTATAGTAAAAAATAGT
CATATTTTTCTTATACAGTGGAGCCTCCATAACTTGAATCCCTACCACAC
GTATATCAAACGTTTCTATAACTCGATCCTTCTAGTTAACAATCCTTATA
GACCTTACTTCATGACTCGAAATCTCCAACTggacaaatttgtgttcccg
gTGCTTGTTCAAGTTATGGAAAACTCCACTTGGCCGTACCTACGGTAAGT
CATTTAACTCAAGCGCCAGCTCCCAGAATCACCGCAACCAGCCGAATGTA
tagggtcactgagacagggttgtGAATAAGGATGATCAGAATCATGGTAC
ATGAATTGAAGCTTTGTAGAATTCTTTATGAAATTGGTATTTATAAAATA
TGATGTTTACCattattatttacaaattttagaaaataaacctttttcac
aactctcataaaaaataatgctgaaaattttttatcttagCCTGGAAAAT
TGGCACTGTACAAATATCACGTAAAAGTGCTCTCCTCTCACGTAATGATG

Coding sequence (CDS) from alignment at sc0000067:462145..465944+

>TCONS_00006430 ID=TCONS_00006430|Name=TCONS_00006430|organism=Clytia hemisphaerica|type=CDS|length=3492bp|location=Sequence derived from alignment at sc0000067:462145..465944+ (Clytia hemisphaerica)
ATGGCTTTGGATTTTGCAGTGGGATGTATTGGAGGATTTGCAGGAATTCT
GGTTGGACATCCCTTTGATACAGTTAAGGTTCGTTTACAAAGTCAAGATC
AAAAGAACATCAAATACACCGGAACATGGAATTGTTTCAGTCAAATTGTC
AAGAAAGAATCGATATTTGGTTTGTATAAAGGAATGCTATCACCATTATA
TGGCCAAATCGGTATCAACGCAATTGTATTTGGTATCCATGGAAATGTAT
TGAGAGCTTTGGGTAATCAAGACATCAAAGGACAATTTATCGCTGGTTCT
ATAGCCGGGGGTGTTCAAAGTTTCATAGCCTCGCCGATGGAGTTGGTCAA
AATCAGATTTCAAATGCAAGGAGAAGGCATTTCTTCTAAAGTCAAGGACA
CTAAGAAAGATAAGCGATATTTTTATAAATCACCTTTAGATTGTTTGCGA
AAGATTTACAAGTACGAAGGAGGTTTCCAAGGAGTGTTTAGAGGGATATC
GCTAACGTTGTGGAGAGAGATACCATCTTTTGGTGTCTATTTTGCATCTT
ACGATTATCTGTGCAGACAAACAAATGCAGTGACGGAAAACACTGTTAAT
ATTtggaaacttttgttttgtgggGGAACAGCTGGTATTGTATGTTGGAT
TGTAACCTACCCAGTAGACGTTATAAAGACGCGACAGCAAATGGATGGTA
TGGGCGCTCTAAAGTATAAAGGTGTCCTAGACTGTACTATAAAGAGTGTA
CAAGAGGAAGGATATAGTGTACTATTTCGTGGTCTGAATGCTACGTTGTT
AAGAGCGTTTCCAACAAATGCTGCCACTTTAGCTACCGTTACGGTAACAT
TAAAATTACTAGGTCATAGCTGAATGGCTTTGGATTTTGCAGTGGGATGT
ATTGGAGGATTTGCAGGAATTCTGGTTGGACATCCCTTTGATACAGTTAA
GGTTCGTTTACAAAGTCAAGATCAAAAGAACATCAAATACACCGGAACAT
GGAATTGTTTCAGTCAAATTGTCAAGAAAGAATCGATATTTGGTTTGTAT
AAAGGAATGCTATCACCATTATATGGCCAAATCGGTATCAACGCAATTGT
ATTTGGTATCCATGGAAATGTATTGAGAGCTTTGGGTAATCAAGACATCA
AAGGACAATTTATCGCTGGTTCTATAGCCGGGGGTGTTCAAAGTTTCATA
GCCTCGCCGATGGAGTTGGTCAAAATCAGATTTCAAATGCAAGGAGAAGG
CATTTCTTCTAAAGTCAAGGACACTAAGAAAGATAAGCGATATTTTTATA
AATCACCTTTAGATTGTTTGCGAAAGATTTACAAGTACGAAGGAGGTTTC
CAAGGAGTGTTTAGAGGGATATCGCTAACGTTGTGGAGAGAGATACCATC
TTTTGGTGTCTATTTTGCATCTTACGATTATCTGTGCAGACAAACAAATG
CAGTGACGGAAAACACTGTTAATATTtggaaacttttgttttgtgggGGA
ACAGCTGGTATTGTATGTTGGATTGTAACCTACCCAGTAGACGTTATAAA
GACGCGACAGCAAATGGATGGTATGGGCGCTCTAAAGTATAAAGGTGTCC
TAGACTGTACTATAAAGAGTGTACAAGAGGAAGGATATAGTGTACTATTT
CGTGGTCTGAATGCTACGTTGTTAAGAGCGTTTCCAACAAATGCTGCCAC
TTTAGCTACCGTTACGGTAACATTAAAATTACTAGGTCATAGCTGAATGG
CTTTGGATTTTGCAGTGGGATGTATTGGAGGATTTGCAGGAATTCTGGTT
GGACATCCCTTTGATACAGTTAAGGTTCGTTTACAAAGTCAAGATCAAAA
GAACATCAAATACACCGGAACATGGAATTGTTTCAGTCAAATTGTCAAGA
AAGAATCGATATTTGGTTTGTATAAAGGAATGCTATCACCATTATATGGC
CAAATCGGTATCAACGCAATTGTATTTGGTATCCATGGAAATGTATTGAG
AGCTTTGGGTAATCAAGACATCAAAGGACAATTTATCGCTGGTTCTATAG
CCGGGGGTGTTCAAAGTTTCATAGCCTCGCCGATGGAGTTGGTCAAAATC
AGATTTCAAATGCAAGGAGAAGGCATTTCTTCTAAAGTCAAGGACACTAA
GAAAGATAAGCGATATTTTTATAAATCACCTTTAGATTGTTTGCGAAAGA
TTTACAAGTACGAAGGAGGTTTCCAAGGAGTGTTTAGAGGGATATCGCTA
ACGTTGTGGAGAGAGATACCATCTTTTGGTGTCTATTTTGCATCTTACGA
TTATCTGTGCAGACAAACAAATGCAGTGACGGAAAACACTGTTAATATTt
ggaaacttttgttttgtgggGGAACAGCTGGTATTGTATGTTGGATTGTA
ACCTACCCAGTAGACGTTATAAAGACGCGACAGCAAATGGATGGTATGGG
CGCTCTAAAGTATAAAGGTGTCCTAGACTGTACTATAAAGAGTGTACAAG
AGGAAGGATATAGTGTACTATTTCGTGGTCTGAATGCTACGTTGTTAAGA
GCGTTTCCAACAAATGCTGCCACTTTAGCTACCGTTACGGTAACATTAAA
ATTACTAGGTCATAGCTGAATGGCTTTGGATTTTGCAGTGGGATGTATTG
GAGGATTTGCAGGAATTCTGGTTGGACATCCCTTTGATACAGTTAAGGTT
CGTTTACAAAGTCAAGATCAAAAGAACATCAAATACACCGGAACATGGAA
TTGTTTCAGTCAAATTGTCAAGAAAGAATCGATATTTGGTTTGTATAAAG
GAATGCTATCACCATTATATGGCCAAATCGGTATCAACGCAATTGTATTT
GGTATCCATGGAAATGTATTGAGAGCTTTGGGTAATCAAGACATCAAAGG
ACAATTTATCGCTGGTTCTATAGCCGGGGGTGTTCAAAGTTTCATAGCCT
CGCCGATGGAGTTGGTCAAAATCAGATTTCAAATGCAAGGAGAAGGCATT
TCTTCTAAAGTCAAGGACACTAAGAAAGATAAGCGATATTTTTATAAATC
ACCTTTAGATTGTTTGCGAAAGATTTACAAGTACGAAGGAGGTTTCCAAG
GAGTGTTTAGAGGGATATCGCTAACGTTGTGGAGAGAGATACCATCTTTT
GGTGTCTATTTTGCATCTTACGATTATCTGTGCAGACAAACAAATGCAGT
GACGGAAAACACTGTTAATATTtggaaacttttgttttgtgggGGAACAG
CTGGTATTGTATGTTGGATTGTAACCTACCCAGTAGACGTTATAAAGACG
CGACAGCAAATGGATGGTATGGGCGCTCTAAAGTATAAAGGTGTCCTAGA
CTGTACTATAAAGAGTGTACAAGAGGAAGGATATAGTGTACTATTTCGTG
GTCTGAATGCTACGTTGTTAAGAGCGTTTCCAACAAATGCTGCCACTTTA
GCTACCGTTACGGTAACATTAAAATTACTAGGTCATAGCTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_003667	XLOC_003667	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00006430-exon-sc0000067-1491911889:462145..462312	TCONS_00006430-exon-sc0000067-1491911889:462145..462312	Clytia hemisphaerica	exon
TCONS_00006430-exon-sc0000067-1510915933:462145..462312	TCONS_00006430-exon-sc0000067-1510915933:462145..462312	Clytia hemisphaerica	exon
TCONS_00006430-exon-sc0000067-1575043694:462145..462312	TCONS_00006430-exon-sc0000067-1575043694:462145..462312	Clytia hemisphaerica	exon
TCONS_00006430-exon-sc0000067-1491911889:462712..462755	TCONS_00006430-exon-sc0000067-1491911889:462712..462755	Clytia hemisphaerica	exon
TCONS_00006430-exon-sc0000067-1510915933:462712..462755	TCONS_00006430-exon-sc0000067-1510915933:462712..462755	Clytia hemisphaerica	exon
TCONS_00006430-exon-sc0000067-1575043694:462712..462755	TCONS_00006430-exon-sc0000067-1575043694:462712..462755	Clytia hemisphaerica	exon
TCONS_00006430-exon-sc0000067-1491911889:463312..463395	TCONS_00006430-exon-sc0000067-1491911889:463312..463395	Clytia hemisphaerica	exon
TCONS_00006430-exon-sc0000067-1510915933:463312..463395	TCONS_00006430-exon-sc0000067-1510915933:463312..463395	Clytia hemisphaerica	exon
TCONS_00006430-exon-sc0000067-1575043694:463312..463395	TCONS_00006430-exon-sc0000067-1575043694:463312..463395	Clytia hemisphaerica	exon
TCONS_00006430-exon-sc0000067-1491911889:464453..465944	TCONS_00006430-exon-sc0000067-1491911889:464453..465944	Clytia hemisphaerica	exon
TCONS_00006430-exon-sc0000067-1510915933:464453..465944	TCONS_00006430-exon-sc0000067-1510915933:464453..465944	Clytia hemisphaerica	exon
TCONS_00006430-exon-sc0000067-1575043694:464453..465944	TCONS_00006430-exon-sc0000067-1575043694:464453..465944	Clytia hemisphaerica	exon

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00006430-protein	TCONS_00006430-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000067	supercontig	sc0000067:462145..465944 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0224685	0.0657309	0	0.0497781	0.0303	0	0.0288868	0	0	0.0234525	0	0.0149639	0.0149431	0	0	0	10.0527	11.8597	0	0	16.4015	14.7498	4.81748	5.24638	79.9933	36.2989	0	0	0	0.0254082

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR002067	Mit_carrier
IPR023395	Mt_carrier_dom
IPR018108	Mitochondrial_sb/sol_carrier

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport

Blast

[Close]

BLAST of TCONS_00006430 vs. Swiss-Prot (Human)
Match: MCATL (Mitochondrial basic amino acids transporter OS=Homo sapiens GN=SLC25A29 PE=1 SV=2)

HSP 1 Score: 286.574 bits (732), Expect = 4.828e-91
Identity = 146/274 (53.28%), Postives = 182/274 (66.42%), Query Frame = 3

Query:  135 MALDFAVGCIGGFAGILVGHPFDTVKVRLQSQDQKNIKYTGTWNCFSQIVKKESIFGLYKGMLSPLYGQIGINAIVFGIHGNVLRALGNQDIKGQFIAGSIAGGVQSFIASPMELVKIRFQMQGEGISSKVKDTKKDKRYFYKSPLDCLRKIYKYEGGFQGVFRGISLTLWREIPSFGVYFASYDYLCRQTNAVTENTVNIWKLLFCGGTAGIVCWIVTYPVDVIKTRQQMDGM-GALKYKGVLDCTIKSVQEEGYSVLFRGLNATLLRAFPTN 953
            MALDF  GC GG AG+LVGHPFDTVKVRLQ Q  +  +Y GT +CF  I+K+ES+ GLYKG+ SPL G   INA+VFG+ GN LRALG+     QF+AG+ AG +Q  I  PMEL K R Q+Q  G +             YK  LDCL +IY +E G +GV RG+  TL RE PSFGVYF +YD L R       + + + KLL  GGT+GIV W+ TYPVDV+K+R Q DG+ GA +Y+G+LDC  +S + EG+ V  RGL +TLLRAFP N
Sbjct:    1 MALDFLAGCAGGVAGVLVGHPFDTVKVRLQVQSVEKPQYRGTLHCFKSIIKQESVLGLYKGLGSPLMGLTFINALVFGVQGNTLRALGHDSPLNQFLAGAAAGAIQCVICCPMELAKTRLQLQDAGPART-----------YKGSLDCLAQIYGHE-GLRGVNRGMVSTLLRETPSFGVYFLTYDALTRALGCEPGDRLLVPKLLLAGGTSGIVSWLSTYPVDVVKSRLQADGLRGAPRYRGILDCVHQSYRAEGWRVFTRGLASTLLRAFPVN 262

The following BLAST results are available for this feature:

BLAST of TCONS_00006430 vs. Swiss-Prot (Human)

BLAST of TCONS_00006430 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MCATL	4.828e-91	53.28	Mitochondrial basic amino acids transporter OS=Hom...	[more]

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TCONS_00006430 (transcript) - C. hemisphaerica