TCONS_00042807-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00042807-protein
Unique NameTCONS_00042807-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length226

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00042807-protein ID=TCONS_00042807-protein|Name=TCONS_00042807-protein|organism=Clytia hemisphaerica|type=polypeptide|length=226bp
FVEFIKRPLTICRLLCILFAIVVFGCISAGGYDDASKHCVFNRNKNACQY
GVAIGVIAFLACLLFLAVDAQFDSISNTVNRRHLVTADLGFSAFWTFLWF
VGFCFLADQWRKSPMQSQNVTNHARAAIAFSFFSIFTWIALSLMAYQRYR
QGDGFERTHQQPASGGDYNTANQGGYNKSPYASFPHPGEDESAQQSYQSQ
PFGVPEQPFGVPPSQPVKTEYSVPEY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_026601XLOC_026601Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00042807TCONS_00042807Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008253Marvel
IPR016579Synaptogyrin
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008253Marvel domainPFAMPF01284MARVELcoord: 4..141
e-value: 5.6E-25
score: 87.9
IPR008253Marvel domainPROSITEPS51225MARVELcoord: 4..150
score: 18.212
IPR016579SynaptogyrinPIRSFPIRSF011282Synaptogyrincoord: 1..215
e-value: 5.4E-74
score: 246.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 156..226

Blast
[Close]
BLAST of TCONS_00042807-protein vs. Swiss-Prot (Human)
Match: SNG2 (Synaptogyrin-2 OS=Homo sapiens GN=SYNGR2 PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.118e-55
Identity = 98/206 (47.57%), Postives = 127/206 (61.65%), Query Frame = 0 
Query:    3 EFIKRPLTICRLLCILFAIVVFGCISAGGYDDASK----HCVFNRNKNACQYGVAIGVIAFLACLLFLAVDAQFDSISNTVNRRHLVTADLGFSAFWTFLWFVGFCFLADQWR-KSPMQSQNVTNHARAAIAFSFFSIFTWIALSLMAYQRYRQG-DGFERTHQQPASGGDYNTANQGGYNKSPYASFPHPGEDESAQQSYQSQPF 202
             F+ +P  + R +C++FA++VF CI   GY +A +    +CVFNRN++AC+YG AIGV+AFLA   FL VDA F  ISN  +R++LV  DL FSA WTFLWFVGFCFL +QW   +P       +  RAAI FSFFSIF+W  L+ +AYQRY+ G D F + +  P    D NTA         YAS+P    D     +YQ  PF
Sbjct:   19 RFLTQPQVVARAVCLVFALIVFSCIYGEGYSNAHESKQMYCVFNRNEDACRYGSAIGVLAFLASAFFLVVDAYFPQISNATDRKYLVIGDLLFSALWTFLWFVGFCFLTNQWAVTNPKDVLVGADSVRAAITFSFFSIFSWGVLASLAYQRYKAGVDDFIQNYVDPTP--DPNTA---------YASYPGASVD-----NYQQPPF 208
The following BLAST results are available for this feature:
BLAST of TCONS_00042807-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SNG21.118e-5547.57Synaptogyrin-2 OS=Homo sapiens GN=SYNGR2 PE=1 SV=1[more]
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