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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042807 ID=TCONS_00042807|Name=TCONS_00042807|organism=Clytia hemisphaerica|type=transcript|length=2489bp
TTTTGTTGAATTCATCAAAAGACCATTGACTATCTGCAGATTATTATGTA
TTCTTTTCGCTATCGTTGTTTTTGGATGTATCTCAGCTGGTGGTTATGAT
GATGCATCAAAGCATTGTGTGTTCAACAGAAACAAAAACGCCTGTCAATA
TGGTGTTGCCATTGGTGTTATCGCATTCCTAGCGTGTCTACTATTCCTTG
CTGTTGACGCACAATTTGACAGCATTAGTAACACAGTCAACAGACGTCAC
CTGGTGACTGCGGATCTTGGATTTTCAGCTTTCTGGACATTTCTTTGGTT
CGTTGGCTTTTGTTTCTTGGCTGACCAGTGGCGTAAAAGTCCAATGCAAT
CACAGAATGTGACAAACCATGCTAGAGCAGCCATTGCATTCTCCTTCTTC
TCTATATTCACATGGATTGCACTATCACTCATGGCATACCAACGTTACCG
CCAAGGCGATGGATTCGAACGCACACATCAACAACCTGCATCGGGCGGTG
ATTACAACACTGCCAACCAGGGTGGATACAATAAGTCACCCTATGCCTCA
TTCCCACACCCTGGCGAAGATGAGTCCGCCCAACAGTCGTATCAGTCACA
GCCATTTGGGGTACCCGAGCAACCGTTTGGGGTACCACCTTCGCAACCTG
TGAAAACTGAATATAGTGTTCCCGAATACTGATTGAACGAGATGCGAAAT
TAACAATTAGGGTATTATCTTTCTTGACATTCTTTTATACAAAATATCAG
ATCATTGTATAACACAAAGAGATTCACACATCTTCTCCTGAATAAGTATA
TCATATTCTTTGTGAAATTttgttatgatattttttataatgacaAACAG
AATGCAAAGTGAAATAGACTAAAGATTGGGATATGCTTACATcgtcaaaa
atcaatgaaacCGAAATCCACTCGTTGAACTTACCTTCTTTTTTTTGAGC
ATTCTGTATACCCAATAAACGACTAATATTTTATAGGAAACTATTGTGAA
TTAAGTGACCTTTGTTGATAGGCattcattgctgaaaattacAATTATAA
CCCTTTTCTCCAAATAAATTAAAGTTAtagttttttcataaattttaaat
aACATCATTGATTTGGGAGCAAGGAAGGTTTTAAAGTAGGAGATTCCGCT
AGCTTTAATTTTTTGTAGAATTACTGGATTTgcctttttcatatttttga
atttgaattgtcGCAAGAATTCTAGGAAATCGCACGGTTTTGTTGATGAA
TTTAACTTTactgttttttttagtttgtaGTTGAATAGAGTGAtccaaat
tattttaaattcagTAGTGGGTAATGAAATTTATGAATCAACTGATattt
cgaaaatatttcttaattACTATCCTTCTATTGCCATCCAAAATTATCTG
CCATATCTGCCatttttgatcggagttttctTGGAAGTGCCGTAGTTTTA
AAACTCCAAACCATGATGCATTTCTTGGGGACTCCTCCCCATGGGTAATA
CtgctaaatattttcaaattgtccaaaatatttcATGATTATAAACAAGT
AGTTtaatttattgtattttttaaaacaacaacagcattttttgttcttt
ttaacGCTTTTTTGTCGTATTTAcattaactttttcaaaaacttggtAGC
TTTTCTAGACATGTGATGATTTATAATGACAATGTCACCTCCGTGTCCAT
AAAGGGATATATAGGGTGTCCTTTAATGAGTtagtttttttaatgaattt
gaaAGCTAAGGTACGAAGAAACTAATAATGCCACGATCAGCCAGGATGAG
ATTACAGAAGAAAttcacaaatttattttcacgaATATTCGAAGTGAATT
TTCTTCGTGACCATTTGATTTCGggaattcaaattattttccgAGTGAAG
GAAATAAATGAATCTAAAGTAGATTTTgatttctgaaattttaaagCGAG
GATCGACCTCTCTTACAGTAGCCTTTTAGGATTTTCATCAtcagtatttt
ttgttttgtaaattCGTCATTCATATATCTTGGTTATTACGTTGTTTttc
tgtttgttgtttttttttttgataattttatcttttttggaAACGAAGAT
TTAATAGTAGTAGAATATTTTGTTATAAACGGATTGTTCGATATTGTTTA
GATTCTTATTCCCGGTTTCGAAGCATAAAGATGTTTTTGGGTCCTTGAGC
TCCGTCATATCTCCCTTAGCTCCGTCATATCTCCCTTAGCTCCGTCATAT
TTCCCTTAGCTCCGAGCGTAAAACTTAAACCTATGAATTCTCTTAGAAAA
ACCCTTAGAAACTAATttatatttgatattttaaaaatttttgtctaGGC
TTTTAATATCTgggatatttttctttttttggaaattttgatttttgggg
cctgtgGAAAAGTTTTTAGCTAAAACGatgctaaaactttggggcagcct
cgAGACTTCGAAAATGGTCgggtttggctgaaatttagc Run BLAST on NCBI protein sequence of TCONS_00042807-protein >TCONS_00042807-protein ID=TCONS_00042807-protein|Name=TCONS_00042807-protein|organism=Clytia hemisphaerica|type=polypeptide|length=226bp
FVEFIKRPLTICRLLCILFAIVVFGCISAGGYDDASKHCVFNRNKNACQY
GVAIGVIAFLACLLFLAVDAQFDSISNTVNRRHLVTADLGFSAFWTFLWF
VGFCFLADQWRKSPMQSQNVTNHARAAIAFSFFSIFTWIALSLMAYQRYR
QGDGFERTHQQPASGGDYNTANQGGYNKSPYASFPHPGEDESAQQSYQSQ
PFGVPEQPFGVPPSQPVKTEYSVPEY Run BLAST on NCBI transcript from alignment at sc0003694:6198..10217- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042807 ID=TCONS_00042807|Name=TCONS_00042807|organism=Clytia hemisphaerica|type=transcript|length=4020bp|location=Sequence derived from alignment at sc0003694:6198..10217- (Clytia hemisphaerica)
TTTTGTTGAATTCATCAAAAGACCATTGACTATCTGCAGATTATTATGTA
TTGTAAGTGATTTTACCCTTTTTGGCTGAATTTTGTTCTGCGTCTAAAGT
CTGTCTCAAAAGTAAGCTGACACTTTTTTAACAATTATGCTTTTTTGAAA
AATTATACACTGTTAGGAAGAAATTCTCATGGAGAATTTTATGATGTAAT
TACTTTGAATAAACGCCCTGGGCGTTTATTAAATTTTTTTATTTTTAGGA
GGAGCGTTTATTCGAGGGGGCGTTCAAAAGAAGGGGGCGTTTATTAAATA
ATTTCCATTTAAGATCACCTTTGGAGGGAATCAATACCCTAATTTGTCTA
TATTGATCTTTAAGCCCGAATATCCCTGTTTAAAAACATAAAATTGTGTC
AAAATTACTTTAGTTGTGAAGATGCTACAAATTTTAATTAACGAATATGT
ATCTTTGATTTCATTTAAACACTTTCTTGATGCTTGAAGCCACTTGTTTC
AAATAAACGCCCCTCCTAGAGGGGGCGCTAATTCGAAGGGGTGTTTATTG
AATAATTTCCCTTTTAGAGGGGGCCTATATTCAAGNGCTTGAAGCCACTT
GTTTCAAATAAACGCCCCTCCTGGAGGGGGCGTTTATTGAATAATTTCCC
TTTTAGAGGGGGCGTTTAAAAGAAAGGGGCGTTTATTCGAAGTAATACGG
TAGATTAAAATGTTTTATACTATCAAGAATCAAAATTCAAAAATCATAGC
ATGACACTTATATTTGAACCTCGCTGGTTTTCAAGTGTCTATATCATCTT
TTGTATAATTCCCTTCGAGAATATCTTTCAAACTTTTTAACATAGGGTTC
TGAGAAATTGTTGAAAAAGTAAACTGTCCACATACTTTTGAGATAGACCT
AAATATATATTTTTATACTTGAAACTGAGAGTAAAACAAATTAATTAATA
TTTCAATGTTGTTCTTTAATTGTCTTTATCACTCTTCAGATAGAGAAAAA
CGTGACTTTTCAGAAGCCTGGAGAGGTTATTTTTCCTGGAGGGTTTCTTG
GGGCTTATAAGTAAGTCTACGACTACAGTTGGAGGTGACTCAAAGGTTCC
TTATTCGATAGCTGCCTACCCAATGGTAGCGAAGAGTCATTCATTAGGTT
GCTGCGCCATTTTTGCCATCATATTATTACGAGAACTTGCCTGTACAAAT
TTTGTAAAATTGATTCTTATCCTGTCTCTCTTTTAGCTTTTCGCTATCGT
TGTTTTTGGATGTATCTCAGCTGGTGGTTATGATGATGCATCAAAGCATT
GTGTGTTCAACAGAAACAAAAACGCCTGTCAATATGGTGTTGCCATTGGT
GTTATCGCATTCCTAGCGTGTCTACTATTCCTTGCTGTTGACGCACAATT
TGACAGCATTAGTAACACAGTCAACAGACGTCACCTGGTGACTGCGGATC
TTGGATTTTCAGCTTTCTGGACATTTCTTTGGTTCGTTGGCTTTTGTTTC
TTGGCTGACCAGTGGCGTAAAAGTCCAATGCAATCACAGAATGTGACAAA
CCATGCTAGAGCAGCCATTGCATTCTCCTTCTTCTCTATATTCACATGGG
TGAGGATTGATTGAGGATTTTTTTTTTCGAAGGGAATTGTACTGTAGTCA
CAAATAGTTAAACACTTGTTTACTGAGGTTATTGTCAAAAAAGAGTCTCT
TATTTTCCTCTAAAAGACTAATATTTAGTCTATGATTGCCTTAATTTTGG
GTATTTAAAAGTACAATTTTCAACTCTCGGTAATTGGCCCTATCCCCAAA
TGATTAAAATCTAAAGATTTTCCCAATCCTCCCCCTCCCCCGTTTATTCA
GCACCTAAGAGTAGTTTCTTCTAATTCCTTTATTCAGTGTGTGAGATTCT
ATTCGAAAATAATGTTTTAAACATTTTTATTTTCTATTTTTCTCAGATTG
CACTATCACTCATGGCATACCAACGTTACCGCCAAGGCGATGGATTCGAA
CGCACACATCAACAACCTGCATCGGGCGGTGATTACAACACTGCCAACCA
GGGTGGATACAATAAGTCACCCTATGCCTCATTCCCACACCCTGGCGAAG
ATGAGTCCGCCCAACAGTCGTATCAGTCACAGCCATTTGGGGTACCCGAG
CAACCGTTTGGGGTACCACCTTCGCAACCTGTGAAAACTGAATATAGTGT
TCCCGAATACTGATTGAACGAGATGCGAAATTAACAATTAGGGTATTATC
TTTCTTGACATTCTTTTATACAAAATATCAGATCATTGTATAACACAAAG
AGATTCACACATCTTCTCCTGAATAAGTATATCATATTCTTTGTGAAATT
TTGTTATGATATTTTTTATAATGACAAACAGAATGCAAAGTGAAATAGAC
TAAAGATTGGGATATGCTTACATCGTCAAAAATCAATGAAACCGAAATCC
ACTCGTTGAACTTACCTTCTTTTTTTTGAGCATTCTGTATACCCAATAAA
CGACTAATATTTTATAGGAAACTATTGTGAATTAAGTGACCTTTGTTGAT
AGGCATTCATTGCTGAAAATTACAATTATAACCCTTTTCTCCAAATAAAT
TAAAGTTATAGTTTTTTCATAAATTTTAAATAACATCATTGATTTGGGAG
CAAGGAAGGTTTTAAAGTAGGAGATTCCGCTAGCTTTAATTTTTTGTAGA
ATTACTGGATTTGCCTTTTTCATATTTTTGAATTTGAATTGTCGCAAGAA
TTCTAGGAAATCGCACGGTTTTGTTGATGAATTTAACTTTACTGTTTTTT
TTAGTTTGTAGTTGAATAGAGTGATCCAAATTATTTTAAATTCAGTAGTG
GGTAATGAAATTTATGAATCAACTGATATTTCGAAAATATTTCTTAATTA
CTATCCTTCTATTGCCATCCAAAATTATCTGCCATATCTGCCATTTTTGA
TCGGAGTTTTCTTGGAAGTGCCGTAGTTTTAAAACTCCAAACCATGATGC
ATTTCTTGGGGACTCCTCCCCATGGGTAATACTGCTAAATATTTTCAAAT
TGTCCAAAATATTTCATGATTATAAACAAGTAGTTTAATTTATTGTATTT
TTTAAAACAACAACAGCATTTTTTGTTCTTTTTAACGCTTTTTTGTCGTA
TTTACATTAACTTTTTCAAAAACTTGGTAGCTTTTCTAGACATGTGATGA
TTTATAATGACAATGTCACCTCCGTGTCCATAAAGGGATATATAGGGTGT
CCTTTAATGAGTTAGTTTTTTTAATGAATTTGAAAGCTAAGGTACGAAGA
AACTAATAATGCCACGATCAGCCAGGATGAGATTACAGAAGAAATTCACA
AATTTATTTTCACGAATATTCGAAGTGAATTTTCTTCGTGACCATTTGAT
TTCGGGAATTCAAATTATTTTCCGAGTGAAGGAAATAAATGAATCTAAAG
TAGATTTTGATTTCTGAAATTTTAAAGCGAGGATCGACCTCTCTTACAGT
AGCCTTTTAGGATTTTCATCATCAGTATTTTTTGTTTTGTAAATTCGTCA
TTCATATATCTTGGTTATTACGTTGTTTTTCTGTTTGTTGTTTTTTTTTT
TGATAATTTTATCTTTTTTGGAAACGAAGATTTAATAGTAGTAGAATATT
TTGTTATAAACGGATTGTTCGATATTGTTTAGATTCTTATTCCCGGTTTC
GAAGCATAAAGATGTTTTTGGGTCCTTGAGCTCCGTCATATCTCCCTTAG
CTCCGTCATATCTCCCTTAGCTCCGTCATATTTCCCTTAGCTCCGAGCGT
AAAACTTAAACCTATGAATTCTCTTAGAAAAACCCTTAGAAACTAATTTA
TATTTGATATTTTAAAAATTTTTGTCTAGGCTTTTAATATCTGGGATATT
TTTCTTTTTTTGGAAATTTTGATTTTTGGGGCCTGTGGAAAAGTTTTTAG
CTAAAACGATGCTAAAACTTTGGGGCAGCCTCGAGACTTCGAAAATGGTC
GGGTTTGGCTGAAATTTAGC Coding sequence (CDS) from alignment at sc0003694:6198..10217- >TCONS_00042807 ID=TCONS_00042807|Name=TCONS_00042807|organism=Clytia hemisphaerica|type=CDS|length=2043bp|location=Sequence derived from alignment at sc0003694:6198..10217- (Clytia hemisphaerica)
ATTGCACTATCACTCATGGCATACCAACGTTACCGCCAAGGCGATGGATT
CGAACGCACACATCAACAACCTGCATCGGGCGGTGATTACAACACTGCCA
ACCAGGGTGGATACAATAAGTCACCCTATGCCTCATTCCCACACCCTGGC
GAAGATGAGTCCGCCCAACAGTCGTATCAGTCACAGCCATTTGGGGTACC
CGAGCAACCGTTTGGGGTACCACCTTCGCAACCTGTGAAAACTGAATATA
GTGTTCCCGAATACTGACTTTTCGCTATCGTTGTTTTTGGATGTATCTCA
GCTGGTGGTTATGATGATGCATCAAAGCATTGTGTGTTCAACAGAAACAA
AAACGCCTGTCAATATGGTGTTGCCATTGGTGTTATCGCATTCCTAGCGT
GTCTACTATTCCTTGCTGTTGACGCACAATTTGACAGCATTAGTAACACA
GTCAACAGACGTCACCTGGTGACTGCGGATCTTGGATTTTCAGCTTTCTG
GACATTTCTTTGGTTCGTTGGCTTTTGTTTCTTGGCTGACCAGTGGCGTA
AAAGTCCAATGCAATCACAGAATGTGACAAACCATGCTAGAGCAGCCATT
GCATTCTCCTTCTTCTCTATATTCACATGGTTTGTTGAATTCATCAAAAG
ACCATTGACTATCTGCAGATTATTATGTATTATTGCACTATCACTCATGG
CATACCAACGTTACCGCCAAGGCGATGGATTCGAACGCACACATCAACAA
CCTGCATCGGGCGGTGATTACAACACTGCCAACCAGGGTGGATACAATAA
GTCACCCTATGCCTCATTCCCACACCCTGGCGAAGATGAGTCCGCCCAAC
AGTCGTATCAGTCACAGCCATTTGGGGTACCCGAGCAACCGTTTGGGGTA
CCACCTTCGCAACCTGTGAAAACTGAATATAGTGTTCCCGAATACTGACT
TTTCGCTATCGTTGTTTTTGGATGTATCTCAGCTGGTGGTTATGATGATG
CATCAAAGCATTGTGTGTTCAACAGAAACAAAAACGCCTGTCAATATGGT
GTTGCCATTGGTGTTATCGCATTCCTAGCGTGTCTACTATTCCTTGCTGT
TGACGCACAATTTGACAGCATTAGTAACACAGTCAACAGACGTCACCTGG
TGACTGCGGATCTTGGATTTTCAGCTTTCTGGACATTTCTTTGGTTCGTT
GGCTTTTGTTTCTTGGCTGACCAGTGGCGTAAAAGTCCAATGCAATCACA
GAATGTGACAAACCATGCTAGAGCAGCCATTGCATTCTCCTTCTTCTCTA
TATTCACATGGTTTGTTGAATTCATCAAAAGACCATTGACTATCTGCAGA
TTATTATGTATTATTGCACTATCACTCATGGCATACCAACGTTACCGCCA
AGGCGATGGATTCGAACGCACACATCAACAACCTGCATCGGGCGGTGATT
ACAACACTGCCAACCAGGGTGGATACAATAAGTCACCCTATGCCTCATTC
CCACACCCTGGCGAAGATGAGTCCGCCCAACAGTCGTATCAGTCACAGCC
ATTTGGGGTACCCGAGCAACCGTTTGGGGTACCACCTTCGCAACCTGTGA
AAACTGAATATAGTGTTCCCGAATACTGACTTTTCGCTATCGTTGTTTTT
GGATGTATCTCAGCTGGTGGTTATGATGATGCATCAAAGCATTGTGTGTT
CAACAGAAACAAAAACGCCTGTCAATATGGTGTTGCCATTGGTGTTATCG
CATTCCTAGCGTGTCTACTATTCCTTGCTGTTGACGCACAATTTGACAGC
ATTAGTAACACAGTCAACAGACGTCACCTGGTGACTGCGGATCTTGGATT
TTCAGCTTTCTGGACATTTCTTTGGTTCGTTGGCTTTTGTTTCTTGGCTG
ACCAGTGGCGTAAAAGTCCAATGCAATCACAGAATGTGACAAACCATGCT
AGAGCAGCCATTGCATTCTCCTTCTTCTCTATATTCACATGGTTTGTTGA
ATTCATCAAAAGACCATTGACTATCTGCAGATTATTATGTATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042807-exon-sc0003694-1575043694:10166..10217 | TCONS_00042807-exon-sc0003694-1575043694:10166..10217 | Clytia hemisphaerica | exon |
| TCONS_00042807-exon-sc0003694-1575043694:8619..8981 | TCONS_00042807-exon-sc0003694-1575043694:8619..8981 | Clytia hemisphaerica | exon |
| TCONS_00042807-exon-sc0003694-1575043694:6198..8271 | TCONS_00042807-exon-sc0003694-1575043694:6198..8271 | Clytia hemisphaerica | exon |
| TCONS_00042807-exon-sc0003694-1510915933:10166..10217 | TCONS_00042807-exon-sc0003694-1510915933:10166..10217 | Clytia hemisphaerica | exon |
| TCONS_00042807-exon-sc0003694-1510915933:8619..8981 | TCONS_00042807-exon-sc0003694-1510915933:8619..8981 | Clytia hemisphaerica | exon |
| TCONS_00042807-exon-sc0003694-1510915933:6198..8271 | TCONS_00042807-exon-sc0003694-1510915933:6198..8271 | Clytia hemisphaerica | exon |
| TCONS_00042807-exon-sc0003694-1491911889:10166..10217 | TCONS_00042807-exon-sc0003694-1491911889:10166..10217 | Clytia hemisphaerica | exon |
| TCONS_00042807-exon-sc0003694-1491911889:8619..8981 | TCONS_00042807-exon-sc0003694-1491911889:8619..8981 | Clytia hemisphaerica | exon |
| TCONS_00042807-exon-sc0003694-1491911889:6198..8271 | TCONS_00042807-exon-sc0003694-1491911889:6198..8271 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003694 | supercontig | sc0003694:6198..10217 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016020 |
membrane |
Blast
BLAST of TCONS_00042807 vs. Swiss-Prot (Human)
Match: SNG2 (Synaptogyrin-2 OS=Homo sapiens GN=SYNGR2 PE=1 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 2.634e-41 Identity = 98/206 (47.57%), Postives = 127/206 (61.65%), Query Frame = 2
Query: 8 EFIKRPLTICRLLCILFAIVVFGCISAGGYDDASK----HCVFNRNKNACQYGVAIGVIAFLACLLFLAVDAQFDSISNTVNRRHLVTADLGFSAFWTFLWFVGFCFLADQWR-KSPMQSQNVTNHXXXXXXXXXXXXXTWIALSLMAYQRYRQG-DGFERTHQQPASGGDYNTANQGGYNKSPYASFPHPGEDESAQQSYQSQPF 607
F+ +P + R +C++FA++VF CI GY +A + +CVFNRN++AC+YG AIGV+AFLA FL VDA F ISN +R++LV DL FSA WTFLWFVGFCFL +QW +P + RAAI FSFFSIF+W L+ +AYQRY+ G D F + + P D NTA YAS+P D +YQ PF
Sbjct: 19 RFLTQPQVVARAVCLVFALIVFSCIYGEGYSNAHESKQMYCVFNRNEDACRYGSAIGVLAFLASAFFLVVDAYFPQISNATDRKYLVIGDLLFSALWTFLWFVGFCFLTNQWAVTNPKDVLVGADSVRAAITFSFFSIFSWGVLASLAYQRYKAGVDDFIQNYVDPTP--DPNTA---------YASYPGASVD-----NYQQPPF 208
The following BLAST results are available for this feature:
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