TCONS_00042771-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00042771-protein
Unique NameTCONS_00042771-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length295

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00042771-protein ID=TCONS_00042771-protein|Name=TCONS_00042771-protein|organism=Clytia hemisphaerica|type=polypeptide|length=295bp
MPTKKKAIKKSLKENLDDVDVPCCDSYLTCPYEAKNTLKEHLFKVNSGFY
IPGIYDNQLRQLETVINQCVECGESNSVLVIGPRGSGKSKLLSKVLLDVY
NNHGSDYFYVYLSGLIHTDDRSALQDLARQLELENVIGDRVFGSFADNLA
FILDALKNDNGQSKSVILVLDEFDLFAYHKNQSLLYNLFDIAQSKQNPLC
VIGLTCRLDVVELLEKRVKSRYSHRAILTFPSYSFEEYVDIVSSFLKLSE
DFSCKKFRDRWNRNLDENLSEGSVCCEILLKQYNLQKDFQSLIRL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_026570XLOC_026570Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00042771TCONS_00042771Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016527ORC4
IPR027417P-loop_NTPase
Vocabulary: Biological Process
TermDefinition
GO:0006260DNA replication
Vocabulary: Cellular Component
TermDefinition
GO:0000808origin recognition complex
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006260 DNA replication
cellular_component GO:0005634 nucleus
cellular_component GO:0000808 origin recognition complex
molecular_function GO:0003677 DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF13191AAA_16coord: 56..202
e-value: 2.9E-12
score: 47.2
NoneNo IPR availableGENE3D3.40.50.300coord: 54..231
e-value: 7.1E-18
score: 64.1
NoneNo IPR availableCDDcd00009AAAcoord: 76..219
e-value: 7.93526E-5
score: 39.8219
IPR016527Origin recognition complex subunit 4PIRSFPIRSF007858ORC4coord: 18..295
e-value: 2.8E-89
score: 297.7
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 55..248

Blast
[Close]
BLAST of TCONS_00042771-protein vs. Swiss-Prot (Human)
Match: ORC4 (Origin recognition complex subunit 4 OS=Homo sapiens GN=ORC4 PE=1 SV=2)

HSP 1 Score: 238.81 bits (608), Expect = 3.918e-76
Identity = 122/238 (51.26%), Postives = 167/238 (70.17%), Query Frame = 0 
Query:   58 QLRQLETVINQCVECGESNSVLVIGPRGSGKSKLLSKVLLDVYNNH--GSDYFYVYLSGLIHTDDRSALQDLARQLELENVIGDRVFGSFADNLAFILDALK-NDNGQSKSVILVLDEFDLFAYHKNQSLLYNLFDIAQSKQNPLCVIGLTCRLDVVELLEKRVKSRYSHRAILTFPSYSFEEYVDIVSSFLKLSEDFSCKKFRDRWNRNLDENLSEGSVCCEILLKQYNLQKDFQSL 292
            Q + L  ++ +    GESNSVL+IGPRGSGK+ L++  L ++        +   V+L+GL+  +D+ AL+++ RQL LENV+GD+VFGSFA+NL+F+L+ALK  D   S  VI +LDEFDLFA+HKNQ+LLYNLFDI+QS Q P+ VIGLTCRLD++ELLEKRVKSR+SHR I    S+ F +YV I    L L  +F  K F ++WN N+ + LSE     E+L K +N+ K+ +SL
Sbjct:   43 QYKHLSELLKRTALHGESNSVLIIGPRGSGKTMLINHALKELMEIEEVSENVLQVHLNGLLQINDKIALKEITRQLNLENVVGDKVFGSFAENLSFLLEALKKGDRTSSCPVIFILDEFDLFAHHKNQTLLYNLFDISQSAQTPIAVIGLTCRLDILELLEKRVKSRFSHRQIHLMNSFGFPQYVKIFKEQLSLPAEFPDKVFAEKWNENV-QYLSEDRSVQEVLQKHFNISKNLRSL 279
The following BLAST results are available for this feature:
BLAST of TCONS_00042771-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ORC43.918e-7651.26Origin recognition complex subunit 4 OS=Homo sapie... [more]
back to top