TCONS_00042771 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042771
Unique NameTCONS_00042771
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length992

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042771 ID=TCONS_00042771|Name=TCONS_00042771|organism=Clytia hemisphaerica|type=transcript|length=992bp
ATACTGAAATCAATGATCCCAAAGATATTGGAAGTCACATGCTAGAACTT
TTATTTGAATAATTATGCCAAAGGACTACATTTCTTTTTAGAAATAGTAG
TAAACATGCCAACAAAGAAGAAAGCAATCAAGAAATCtctgaaagaaaat
ttggatGATGTAGATGTCCCATGTTGTGACAGTTATCTTACATGTCCATA
TGAAGCTAAAAATACACTGAAAGAACACTTGTTCAAAGTCAACAGTGGCT
TTTACATTCCTGGTATTTATGACAATCAATTGAGGCAACTTGAAACTGTG
ATAAACCAATGTGTTGAATGTGGTGAAAGCAATTCTGTTCTCGTTATTGG
ACCTAGAGGAAGCGGAAAATCTAAAtTGCTTTCAAAAGTGTTATTGGATG
TTTACAACAACCATGGCAGTGATTATTTCTATGTTTACTTAAGTGgtTTG
ATACACACTGATGATCGATCAGCTCTTCAAGACCTAGCAAGACAATTAGA
ACTAGAAAATGTTATTGGGGATAGAGTCTTTGGATCTTTTGCTGATAATT
TGGCCTTCATATTAGATGCACTTAAAAATGATAATGGACAATCAAAGTCA
GTTATTTTGGTATTAGATGAATTTGATTTGTTTGCCTACCATAAAAACCA
ATCGTTACTTTACAACTTGTTTGACATTGCCCAAAGTAAACAAAACCCAT
TATGTGTCATTGGCCTGACTTGTAGACTTGATGTGGTTGAGTTGTTGGAA
AAACGAGTGAAATCAAGATATTCACACAGAGCTATATTGACATTTCCATC
TTATagttttgaagaatatgtaGACATTGTAAGCTCCTTTCTAAAACTAT
CAGAAGATTTTTCATGTAAAAAGTTCAGGGACAGATGGAATCGTAATTTA
GATgaaaatcttTCTGAAGGTTCAGTATGTTGTGAAATACTTTTGAAACA
GTATAATCTACAAAAGGACTTTCAAAGTCTCATACGTCTCTT
Run BLAST on NCBI

protein sequence of TCONS_00042771-protein

>TCONS_00042771-protein ID=TCONS_00042771-protein|Name=TCONS_00042771-protein|organism=Clytia hemisphaerica|type=polypeptide|length=295bp
MPTKKKAIKKSLKENLDDVDVPCCDSYLTCPYEAKNTLKEHLFKVNSGFY
IPGIYDNQLRQLETVINQCVECGESNSVLVIGPRGSGKSKLLSKVLLDVY
NNHGSDYFYVYLSGLIHTDDRSALQDLARQLELENVIGDRVFGSFADNLA
FILDALKNDNGQSKSVILVLDEFDLFAYHKNQSLLYNLFDIAQSKQNPLC
VIGLTCRLDVVELLEKRVKSRYSHRAILTFPSYSFEEYVDIVSSFLKLSE
DFSCKKFRDRWNRNLDENLSEGSVCCEILLKQYNLQKDFQSLIRL
Run BLAST on NCBI

transcript from alignment at sc0003665:3242..7326-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042771 ID=TCONS_00042771|Name=TCONS_00042771|organism=Clytia hemisphaerica|type=transcript|length=4085bp|location=Sequence derived from alignment at sc0003665:3242..7326- (Clytia hemisphaerica)
ATACTGAAATCAATGATCCCAAAGATATTGGAAGTCACATGCTAGAACTT
TTATTTGAATAATTATGCCAAAGGACTACATTTCTTTTTAGAAATAGTAG
TAAACATGCCAACAAAGAAGAAAGCAATCAAGAAATCTCTGAAAGAAAAT
TTGGATGATGTAGATGTCCCATGTTGTGACAGTTATCTTACATGTCCATA
TGAAGCTAAAAATACACTGAAAGAACACTTGTTCAAAGTCAACAGTGGCT
TTTACATTCCTGGTATTTATGACAATCAATTGAGGTAAATATTAATTTCC
ATTTCCTTATTTCTAATTTTGAAAAGATTACTATACAGGGTGTCCCCAAA
AAAGTCCTTGTTAGACCACTGCAATAAGTAGGAATTTTTTTTTCTTCTAT
GGGATAAACACCTTTCTATGTTTTATCTTCAATTTCTATTATTGCTATTT
CAATTGCTTAAAGAAAGAGCTAAAAAAAGCACCAATGACACCTTTCTATG
TGCACATCTTTTATAATATGCTGTCTTTTTGTGTCAATCAATAGAAATGC
CTTAATTCAAATAGGAATACGTTAAAAGTTTCTTTTTCAAATGCAATGGT
AATTTTTTTTGAATCACAATAATACATCAATAAAACAAAAACCTATAAAC
TTCAATTGACAATACAACATGATAATAAAAAGATACTATTTAGATTTTGT
GATACACAAACAATTTTTTTTTCTATTTATAGAAATGGTCTGACACAGGA
CTTTTTTTGGGACACCCTTTAGTACTCAGTGACAGTCTGGTTTTTCTCTT
TGAATCCTTTCAATTCCTTTGACATTTTGTCAACAACAAAAAATTTTGTT
CATATAACAAGCTTTTCAAGCATTTTAAAGCAAAGAAGATAAGCTTATTT
TGGTAGCTCAAATATAATTTTCATTTCAGCACTTGCCAACATAAATTTGT
GATTACTTTGATAATTTTAGGCAACTTGAAACTGTGATAAACCAATGTGT
TGAATGTGGTGAAAGCAATTCTGTTCTCGTTATTGGACCTAGAGGAAGCG
GAAAATCTAAAGTAAGCATTTGGCGCTACCCACCTTTTAAGTTGATGAAA
TTAACAGATGGTAGTTACGAAATTGCCATTACTAAAAATAATAAAAGTTT
AGTTTGGTTTGTCCATTAATGAAATTTATTTCATAATTCAAATTCATGTG
TTGAACGGTGGAAATGAATGCACTTATTATAATTCGATTTTTGGTAGTTT
AAATTCGTGTTCTTTTTTAACAGAAAAGTAAAATATGAAAAGTAAATGAC
TTGTCTTAAACTACTGAGGTTAAAATAAGTTTTTCTAATTTTAGTTGCTT
TCAAAAGTGTTATTGGATGTTTACAACAACCATGGCAGTGATTATTTCTA
TGTTTACTTAAGTGGTGAGTATCTTTCCTTATTATGATGATAAAAAGTTA
AACGACATAGTTTGCATACACAGTATGTTTAAACAAAAGTAAAAGAAACT
TTATTAGCATAGGGGTGGTCCTCCTATCTTTACTATAAACATAATATCTT
TAGGTAAAGGAACTTAGAACAATTTGAATAATAAAAAAACATATGTTATA
TGTTTACGTTTATTTCAACAATTTCAAACTATTCTTAATCCTATTGTTAA
TTTCCTACATCAATAAATTATTTTTCAGGTTTGATACACACTGATGATCG
ATCAGCTCTTCAAGACCTAGCAAGACAATTAGAACTAGAAAATGTTATTG
GGGATAGAGTCTTTGTAAGTACTGTCACTGAGTGACTCTTGACTTTTTTT
TATCAGTTAATTCCCATTCATTTGTTGTAGTGATCGATTGTTTTCATTTC
TTTTCTCTCCAGGGATCTTTTGCTGATAATTTGGCCTTCATATTAGATGC
ACTTAAAAATGGTAAGGCTTATGATTTCTTCTTCTTAAAAGGCCATTCAT
TATGTCTGAGTGGAACTATATCAGCTAAGTTTAGAAACGCAAGGTATTGT
CCAAAAGAAACCAAAGACACTTTGTCTGCTTTTATTGTATATCTCAACTT
CAGTTGAACCTGGGGATGTCTGTCTGTCTTTATCTGTGTGTATGCCCAAA
ATGCTTTGGGGCAACCTGGAGACTGTTGGCCCAATTAGGCACACTTGGGT
GTTTTTTTTTTTCAATTTTTGAAAAATTTGATTTTTCGTGTATGGGGGTG
GGGTCAATTTTTTTGCCAAAACAAGGCTGAACTTTGGGCGACCTATAAAA
TGCTTCAAAAATAGATAGGTTGGGCTGAAATTTTTGGTACACCTGTTTTT
TTGGTGAAAACCTGGGGAGTTTTTTTCATTTTTTAAAAATCACAATTGGG
CCCTCAAATAGTTGGAATAATAGTTGAGCCCAGTGTATAATCCATGTTTA
ACTATTCTTCAAAATTTGACAAGAGCAGTGTCCAATTAAAGATATTTTCA
CTTTTGTATTTCTCTTCCTTGAATTTCAGATAATGGACAATCAAAGTCAG
TTATTTTGGTATTAGATGAATTTGATTTGTTTGCCTACCATAAAAACCAA
TCGTTACTTTACAACTTGTTTGACATTGCCCAAAGTAAACAAAACCCATT
ATGTGTCATTGGCCTGACTTGTAGACTTGATGTGGTTGAGTTGTTGGAAA
AACGAGTGAAATCAAGATATTCACACAGAGCTATATTGACATTTCCATCT
TATAGTTTTGAAGAATATGTAGACATTGTAAGGTATAACAACCCATTAAA
TTTCATTTAATTTGAAATCATTAAAAAGTGTTTTTAAGTTCCATGCAACT
AAAAACTGAAAAATTAAGGGTGGTTTTGTGACATTTTTTTGACTTTCTTA
TTTAATCCACGACATTTTTCGAATAACTTTAGAAAGAGAGCCTGATTGTT
AAGCTTTCCGATGAATAAATTATTAAAGTTTGTGGGTAACTAGGTATGAT
TTTACACGAGCTTTTTACAGGTAAAGTGTTGTGGGTTAAAATGGCATGTG
GGTTACTTCTTTACTGATCTTCTACCATTATCTTTTCTTTTAGCTCCTTT
CTAAAACTATCAGAAGATTTTTCATGTAAAAAGTTCAGGGACAGATGGAA
TCGTAATTTAGATGTAAGTCATCATTGTGTTTTGCAAATGCAAATACAAT
CACTTAAGCTTGTTATATGAGAATCTAGTAATACTAATTTTGAAGCACCT
TCTTCAAAGAGAGTGTAATTAATCGTTAATTGCATCCTGTAGAGAGCAAT
TAATTGTTAATCACACTTTTCAATGCAGCACCAATGTTTACAAAATTGAT
TTTAATGTTTTTTCTTACGTTTTTTTCATGGAACGTTTTAATTGCATTTG
CAAATTCATTTTTGTGAGAAAGAAAATCTATAAACAACAATAAAATAAAA
ACATAGAGAGAAGAGAAACGTATAAAACTTTCAGTGTAATTTACTTTCCT
AACAGGGAAAAAGTACTTAGATAGACCCATTGTGCGATCAGCTCGTAATC
ACCTAGATAATAACTCGTACAATTCGAAAATAGACCTTATCGGAGTTTTT
GATTTTTCTAAAAAAGCGATGTATTGTGGGATTGTTTCGAGTGTATTACA
ATAGAAATCTCTTAGGAATTCCNAGTTTTTGATTTTTCTAAAAAAGCGAT
GTATTGTGGGATTGTTTCGAGTGTATTACAATAGAAATCTCTTAGGAATT
CCTCGAGGGAATTCTATTGTAATACACTGGAAACAATCCCACAATGCATC
GCTTTTTTAGAAAAATCAAAAACTCTGATAAGGTCTACTGCACTCGTAAT
TCTTTTTGTTTCGAATTTTCCTCGTCCTTTTGGATTTGGAAAATTAATAA
CAAAAAAGATACCAATGCAATTATTCTCGCATTGCACTCGTTATCATGTG
ATCACATATACTTATTTGAGAGTGTAGCAATACTAATTTTGAAGCACCTT
TGATAGATGGACTAAAAAAGCGAGAAATACTCTACTTTATTTTTAGGAAA
ATCTTTCTGAAGGTTCAGTATGTTGTGAAATACTTTTGAAACAGTATAAT
CTACAAAAGGACTTTCAAAGTCTCATACGTCTCTT

Coding sequence (CDS) from alignment at sc0003665:3242..7326-

>TCONS_00042771 ID=TCONS_00042771|Name=TCONS_00042771|organism=Clytia hemisphaerica|type=CDS|length=7080bp|location=Sequence derived from alignment at sc0003665:3242..7326- (Clytia hemisphaerica)
GAAAATCTTTCTGAAGGTTCAGTATGTTGTGAAATACTTTTGAAACAGTA
TAATCTACAAAAGGACTTTCAAAGTCTCATACGTCTCCTCCTTTCTAAAA
CTATCAGAAGATTTTTCATGTAAAAAGTTCAGGGACAGATGGAATCGTAA
TTTAGATATAATGGACAATCAAAGTCAGTTATTTTGGTATTAGATGAATT
TGATTTGTTTGCCTACCATAAAAACCAATCGTTACTTTACAACTTGTTTG
ACATTGCCCAAAGTAAACAAAACCCATTATGTGTCATTGGCCTGACTTGT
AGACTTGATGTGGTTGAGTTGTTGGAAAAACGAGTGAAATCAAGATATTC
ACACAGAGCTATATTGACATTTCCATCTTATAGTTTTGAAGAATATGTAG
ACATTGTAAGGGATCTTTTGCTGATAATTTGGCCTTCATATTAGATGCAC
TTAAAAATGGTTTGATACACACTGATGATCGATCAGCTCTTCAAGACCTA
GCAAGACAATTAGAACTAGAAAATGTTATTGGGGATAGAGTCTTTTTGCT
TTCAAAAGTGTTATTGGATGTTTACAACAACCATGGCAGTGATTATTTCT
ATGTTTACTTAAGTGGCAACTTGAAACTGTGATAAACCAATGTGTTGAAT
GTGGTGAAAGCAATTCTGTTCTCGTTATTGGACCTAGAGGAAGCGGAAAA
TCTAAAATGCCAACAAAGAAGAAAGCAATCAAGAAATCTCTGAAAGAAAA
TTTGGATGATGTAGATGTCCCATGTTGTGACAGTTATCTTACATGTCCAT
ATGAAGCTAAAAATACACTGAAAGAACACTTGTTCAAAGTCAACAGTGGC
TTTTACATTCCTGGTATTTATGACAATCAATTGAGGAAAATCTTTCTGAA
GGTTCAGTATGTTGTGAAATACTTTTGAAACAGTATAATCTACAAAAGGA
CTTTCAAAGTCTCATACGTCTCCTCCTTTCTAAAACTATCAGAAGATTTT
TCATGTAAAAAGTTCAGGGACAGATGGAATCGTAATTTAGATATAATGGA
CAATCAAAGTCAGTTATTTTGGTATTAGATGAATTTGATTTGTTTGCCTA
CCATAAAAACCAATCGTTACTTTACAACTTGTTTGACATTGCCCAAAGTA
AACAAAACCCATTATGTGTCATTGGCCTGACTTGTAGACTTGATGTGGTT
GAGTTGTTGGAAAAACGAGTGAAATCAAGATATTCACACAGAGCTATATT
GACATTTCCATCTTATAGTTTTGAAGAATATGTAGACATTGTAAGGGATC
TTTTGCTGATAATTTGGCCTTCATATTAGATGCACTTAAAAATGGTTTGA
TACACACTGATGATCGATCAGCTCTTCAAGACCTAGCAAGACAATTAGAA
CTAGAAAATGTTATTGGGGATAGAGTCTTTTTGCTTTCAAAAGTGTTATT
GGATGTTTACAACAACCATGGCAGTGATTATTTCTATGTTTACTTAAGTG
GCAACTTGAAACTGTGATAAACCAATGTGTTGAATGTGGTGAAAGCAATT
CTGTTCTCGTTATTGGACCTAGAGGAAGCGGAAAATCTAAAATGCCAACA
AAGAAGAAAGCAATCAAGAAATCTCTGAAAGAAAATTTGGATGATGTAGA
TGTCCCATGTTGTGACAGTTATCTTACATGTCCATATGAAGCTAAAAATA
CACTGAAAGAACACTTGTTCAAAGTCAACAGTGGCTTTTACATTCCTGGT
ATTTATGACAATCAATTGAGGAAAATCTTTCTGAAGGTTCAGTATGTTGT
GAAATACTTTTGAAACAGTATAATCTACAAAAGGACTTTCAAAGTCTCAT
ACGTCTCCTCCTTTCTAAAACTATCAGAAGATTTTTCATGTAAAAAGTTC
AGGGACAGATGGAATCGTAATTTAGATATAATGGACAATCAAAGTCAGTT
ATTTTGGTATTAGATGAATTTGATTTGTTTGCCTACCATAAAAACCAATC
GTTACTTTACAACTTGTTTGACATTGCCCAAAGTAAACAAAACCCATTAT
GTGTCATTGGCCTGACTTGTAGACTTGATGTGGTTGAGTTGTTGGAAAAA
CGAGTGAAATCAAGATATTCACACAGAGCTATATTGACATTTCCATCTTA
TAGTTTTGAAGAATATGTAGACATTGTAAGGGATCTTTTGCTGATAATTT
GGCCTTCATATTAGATGCACTTAAAAATGGTTTGATACACACTGATGATC
GATCAGCTCTTCAAGACCTAGCAAGACAATTAGAACTAGAAAATGTTATT
GGGGATAGAGTCTTTTTGCTTTCAAAAGTGTTATTGGATGTTTACAACAA
CCATGGCAGTGATTATTTCTATGTTTACTTAAGTGGCAACTTGAAACTGT
GATAAACCAATGTGTTGAATGTGGTGAAAGCAATTCTGTTCTCGTTATTG
GACCTAGAGGAAGCGGAAAATCTAAAATGCCAACAAAGAAGAAAGCAATC
AAGAAATCTCTGAAAGAAAATTTGGATGATGTAGATGTCCCATGTTGTGA
CAGTTATCTTACATGTCCATATGAAGCTAAAAATACACTGAAAGAACACT
TGTTCAAAGTCAACAGTGGCTTTTACATTCCTGGTATTTATGACAATCAA
TTGAGGAAAATCTTTCTGAAGGTTCAGTATGTTGTGAAATACTTTTGAAA
CAGTATAATCTACAAAAGGACTTTCAAAGTCTCATACGTCTCCTCCTTTC
TAAAACTATCAGAAGATTTTTCATGTAAAAAGTTCAGGGACAGATGGAAT
CGTAATTTAGATATAATGGACAATCAAAGTCAGTTATTTTGGTATTAGAT
GAATTTGATTTGTTTGCCTACCATAAAAACCAATCGTTACTTTACAACTT
GTTTGACATTGCCCAAAGTAAACAAAACCCATTATGTGTCATTGGCCTGA
CTTGTAGACTTGATGTGGTTGAGTTGTTGGAAAAACGAGTGAAATCAAGA
TATTCACACAGAGCTATATTGACATTTCCATCTTATAGTTTTGAAGAATA
TGTAGACATTGTAAGGGATCTTTTGCTGATAATTTGGCCTTCATATTAGA
TGCACTTAAAAATGGTTTGATACACACTGATGATCGATCAGCTCTTCAAG
ACCTAGCAAGACAATTAGAACTAGAAAATGTTATTGGGGATAGAGTCTTT
TTGCTTTCAAAAGTGTTATTGGATGTTTACAACAACCATGGCAGTGATTA
TTTCTATGTTTACTTAAGTGGCAACTTGAAACTGTGATAAACCAATGTGT
TGAATGTGGTGAAAGCAATTCTGTTCTCGTTATTGGACCTAGAGGAAGCG
GAAAATCTAAAATGCCAACAAAGAAGAAAGCAATCAAGAAATCTCTGAAA
GAAAATTTGGATGATGTAGATGTCCCATGTTGTGACAGTTATCTTACATG
TCCATATGAAGCTAAAAATACACTGAAAGAACACTTGTTCAAAGTCAACA
GTGGCTTTTACATTCCTGGTATTTATGACAATCAATTGAGGAAAATCTTT
CTGAAGGTTCAGTATGTTGTGAAATACTTTTGAAACAGTATAATCTACAA
AAGGACTTTCAAAGTCTCATACGTCTCCTCCTTTCTAAAACTATCAGAAG
ATTTTTCATGTAAAAAGTTCAGGGACAGATGGAATCGTAATTTAGATATA
ATGGACAATCAAAGTCAGTTATTTTGGTATTAGATGAATTTGATTTGTTT
GCCTACCATAAAAACCAATCGTTACTTTACAACTTGTTTGACATTGCCCA
AAGTAAACAAAACCCATTATGTGTCATTGGCCTGACTTGTAGACTTGATG
TGGTTGAGTTGTTGGAAAAACGAGTGAAATCAAGATATTCACACAGAGCT
ATATTGACATTTCCATCTTATAGTTTTGAAGAATATGTAGACATTGTAAG
GGATCTTTTGCTGATAATTTGGCCTTCATATTAGATGCACTTAAAAATGG
TTTGATACACACTGATGATCGATCAGCTCTTCAAGACCTAGCAAGACAAT
TAGAACTAGAAAATGTTATTGGGGATAGAGTCTTTTTGCTTTCAAAAGTG
TTATTGGATGTTTACAACAACCATGGCAGTGATTATTTCTATGTTTACTT
AAGTGGCAACTTGAAACTGTGATAAACCAATGTGTTGAATGTGGTGAAAG
CAATTCTGTTCTCGTTATTGGACCTAGAGGAAGCGGAAAATCTAAAATGC
CAACAAAGAAGAAAGCAATCAAGAAATCTCTGAAAGAAAATTTGGATGAT
GTAGATGTCCCATGTTGTGACAGTTATCTTACATGTCCATATGAAGCTAA
AAATACACTGAAAGAACACTTGTTCAAAGTCAACAGTGGCTTTTACATTC
CTGGTATTTATGACAATCAATTGAGGAAAATCTTTCTGAAGGTTCAGTAT
GTTGTGAAATACTTTTGAAACAGTATAATCTACAAAAGGACTTTCAAAGT
CTCATACGTCTCCTCCTTTCTAAAACTATCAGAAGATTTTTCATGTAAAA
AGTTCAGGGACAGATGGAATCGTAATTTAGATATAATGGACAATCAAAGT
CAGTTATTTTGGTATTAGATGAATTTGATTTGTTTGCCTACCATAAAAAC
CAATCGTTACTTTACAACTTGTTTGACATTGCCCAAAGTAAACAAAACCC
ATTATGTGTCATTGGCCTGACTTGTAGACTTGATGTGGTTGAGTTGTTGG
AAAAACGAGTGAAATCAAGATATTCACACAGAGCTATATTGACATTTCCA
TCTTATAGTTTTGAAGAATATGTAGACATTGTAAGGGATCTTTTGCTGAT
AATTTGGCCTTCATATTAGATGCACTTAAAAATGGTTTGATACACACTGA
TGATCGATCAGCTCTTCAAGACCTAGCAAGACAATTAGAACTAGAAAATG
TTATTGGGGATAGAGTCTTTTTGCTTTCAAAAGTGTTATTGGATGTTTAC
AACAACCATGGCAGTGATTATTTCTATGTTTACTTAAGTGGCAACTTGAA
ACTGTGATAAACCAATGTGTTGAATGTGGTGAAAGCAATTCTGTTCTCGT
TATTGGACCTAGAGGAAGCGGAAAATCTAAAATGCCAACAAAGAAGAAAG
CAATCAAGAAATCTCTGAAAGAAAATTTGGATGATGTAGATGTCCCATGT
TGTGACAGTTATCTTACATGTCCATATGAAGCTAAAAATACACTGAAAGA
ACACTTGTTCAAAGTCAACAGTGGCTTTTACATTCCTGGTATTTATGACA
ATCAATTGAGGAAAATCTTTCTGAAGGTTCAGTATGTTGTGAAATACTTT
TGAAACAGTATAATCTACAAAAGGACTTTCAAAGTCTCATACGTCTCCTC
CTTTCTAAAACTATCAGAAGATTTTTCATGTAAAAAGTTCAGGGACAGAT
GGAATCGTAATTTAGATATAATGGACAATCAAAGTCAGTTATTTTGGTAT
TAGATGAATTTGATTTGTTTGCCTACCATAAAAACCAATCGTTACTTTAC
AACTTGTTTGACATTGCCCAAAGTAAACAAAACCCATTATGTGTCATTGG
CCTGACTTGTAGACTTGATGTGGTTGAGTTGTTGGAAAAACGAGTGAAAT
CAAGATATTCACACAGAGCTATATTGACATTTCCATCTTATAGTTTTGAA
GAATATGTAGACATTGTAAGGGATCTTTTGCTGATAATTTGGCCTTCATA
TTAGATGCACTTAAAAATGGTTTGATACACACTGATGATCGATCAGCTCT
TCAAGACCTAGCAAGACAATTAGAACTAGAAAATGTTATTGGGGATAGAG
TCTTTTTGCTTTCAAAAGTGTTATTGGATGTTTACAACAACCATGGCAGT
GATTATTTCTATGTTTACTTAAGTGGCAACTTGAAACTGTGATAAACCAA
TGTGTTGAATGTGGTGAAAGCAATTCTGTTCTCGTTATTGGACCTAGAGG
AAGCGGAAAATCTAAAATGCCAACAAAGAAGAAAGCAATCAAGAAATCTC
TGAAAGAAAATTTGGATGATGTAGATGTCCCATGTTGTGACAGTTATCTT
ACATGTCCATATGAAGCTAAAAATACACTGAAAGAACACTTGTTCAAAGT
CAACAGTGGCTTTTACATTCCTGGTATTTATGACAATCAATTGAGGAAAA
TCTTTCTGAAGGTTCAGTATGTTGTGAAATACTTTTGAAACAGTATAATC
TACAAAAGGACTTTCAAAGTCTCATACGTCTCCTCCTTTCTAAAACTATC
AGAAGATTTTTCATGTAAAAAGTTCAGGGACAGATGGAATCGTAATTTAG
ATATAATGGACAATCAAAGTCAGTTATTTTGGTATTAGATGAATTTGATT
TGTTTGCCTACCATAAAAACCAATCGTTACTTTACAACTTGTTTGACATT
GCCCAAAGTAAACAAAACCCATTATGTGTCATTGGCCTGACTTGTAGACT
TGATGTGGTTGAGTTGTTGGAAAAACGAGTGAAATCAAGATATTCACACA
GAGCTATATTGACATTTCCATCTTATAGTTTTGAAGAATATGTAGACATT
GTAAGGGATCTTTTGCTGATAATTTGGCCTTCATATTAGATGCACTTAAA
AATGGTTTGATACACACTGATGATCGATCAGCTCTTCAAGACCTAGCAAG
ACAATTAGAACTAGAAAATGTTATTGGGGATAGAGTCTTTTTGCTTTCAA
AAGTGTTATTGGATGTTTACAACAACCATGGCAGTGATTATTTCTATGTT
TACTTAAGTGGCAACTTGAAACTGTGATAAACCAATGTGTTGAATGTGGT
GAAAGCAATTCTGTTCTCGTTATTGGACCTAGAGGAAGCGGAAAATCTAA
AATGCCAACAAAGAAGAAAGCAATCAAGAAATCTCTGAAAGAAAATTTGG
ATGATGTAGATGTCCCATGTTGTGACAGTTATCTTACATGTCCATATGAA
GCTAAAAATACACTGAAAGAACACTTGTTCAAAGTCAACAGTGGCTTTTA
CATTCCTGGTATTTATGACAATCAATTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026570XLOC_026570Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042771-exon-sc0003665-1575043694:7043..7326TCONS_00042771-exon-sc0003665-1575043694:7043..7326Clytia hemisphaericaexon
TCONS_00042771-exon-sc0003665-1575043694:6266..6356TCONS_00042771-exon-sc0003665-1575043694:6266..6356Clytia hemisphaericaexon
TCONS_00042771-exon-sc0003665-1575043694:5913..5982TCONS_00042771-exon-sc0003665-1575043694:5913..5982Clytia hemisphaericaexon
TCONS_00042771-exon-sc0003665-1575043694:5563..5648TCONS_00042771-exon-sc0003665-1575043694:5563..5648Clytia hemisphaericaexon
TCONS_00042771-exon-sc0003665-1575043694:5416..5464TCONS_00042771-exon-sc0003665-1575043694:5416..5464Clytia hemisphaericaexon
TCONS_00042771-exon-sc0003665-1575043694:4595..4847TCONS_00042771-exon-sc0003665-1575043694:4595..4847Clytia hemisphaericaexon
TCONS_00042771-exon-sc0003665-1575043694:4214..4283TCONS_00042771-exon-sc0003665-1575043694:4214..4283Clytia hemisphaericaexon
TCONS_00042771-exon-sc0003665-1575043694:3242..3330TCONS_00042771-exon-sc0003665-1575043694:3242..3330Clytia hemisphaericaexon
TCONS_00042771-exon-sc0003665-1510915933:7043..7326TCONS_00042771-exon-sc0003665-1510915933:7043..7326Clytia hemisphaericaexon
TCONS_00042771-exon-sc0003665-1510915933:6266..6356TCONS_00042771-exon-sc0003665-1510915933:6266..6356Clytia hemisphaericaexon
TCONS_00042771-exon-sc0003665-1510915933:5913..5982TCONS_00042771-exon-sc0003665-1510915933:5913..5982Clytia hemisphaericaexon
TCONS_00042771-exon-sc0003665-1510915933:5563..5648TCONS_00042771-exon-sc0003665-1510915933:5563..5648Clytia hemisphaericaexon
TCONS_00042771-exon-sc0003665-1510915933:5416..5464TCONS_00042771-exon-sc0003665-1510915933:5416..5464Clytia hemisphaericaexon
TCONS_00042771-exon-sc0003665-1510915933:4595..4847TCONS_00042771-exon-sc0003665-1510915933:4595..4847Clytia hemisphaericaexon
TCONS_00042771-exon-sc0003665-1510915933:4214..4283TCONS_00042771-exon-sc0003665-1510915933:4214..4283Clytia hemisphaericaexon
TCONS_00042771-exon-sc0003665-1510915933:3242..3330TCONS_00042771-exon-sc0003665-1510915933:3242..3330Clytia hemisphaericaexon
TCONS_00042771-exon-sc0003665-1491911889:7043..7326TCONS_00042771-exon-sc0003665-1491911889:7043..7326Clytia hemisphaericaexon
TCONS_00042771-exon-sc0003665-1491911889:6266..6356TCONS_00042771-exon-sc0003665-1491911889:6266..6356Clytia hemisphaericaexon
TCONS_00042771-exon-sc0003665-1491911889:5913..5982TCONS_00042771-exon-sc0003665-1491911889:5913..5982Clytia hemisphaericaexon
TCONS_00042771-exon-sc0003665-1491911889:5563..5648TCONS_00042771-exon-sc0003665-1491911889:5563..5648Clytia hemisphaericaexon
TCONS_00042771-exon-sc0003665-1491911889:5416..5464TCONS_00042771-exon-sc0003665-1491911889:5416..5464Clytia hemisphaericaexon
TCONS_00042771-exon-sc0003665-1491911889:4595..4847TCONS_00042771-exon-sc0003665-1491911889:4595..4847Clytia hemisphaericaexon
TCONS_00042771-exon-sc0003665-1491911889:4214..4283TCONS_00042771-exon-sc0003665-1491911889:4214..4283Clytia hemisphaericaexon
TCONS_00042771-exon-sc0003665-1491911889:3242..3330TCONS_00042771-exon-sc0003665-1491911889:3242..3330Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042771-proteinTCONS_00042771-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003665supercontigsc0003665:3242..7326 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.5962	8.65482	9.81633	9.81102	4.45306	4.68024	3.78103	4.26429	1.49327	0.904111	0.772436	1.15719	1.33143	0.0989024	1.11936	1.76857	0.9425	0.771179	0.270848	0.720757	0.918061	0.984527	5.62555	5.93649	1.33987	1.65639	0.442125	0.572081	2.73054	1.45478
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR016527ORC4
IPR027417P-loop_NTPase
Vocabulary: Biological Process
TermDefinition
GO:0006260DNA replication
Vocabulary: Cellular Component
TermDefinition
GO:0000808origin recognition complex
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006260 DNA replication
cellular_component GO:0005634 nucleus
cellular_component GO:0000808 origin recognition complex
molecular_function GO:0003677 DNA binding
Blast
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BLAST of TCONS_00042771 vs. Swiss-Prot (Human)
Match: ORC4 (Origin recognition complex subunit 4 OS=Homo sapiens GN=ORC4 PE=1 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 4.004e-68
Identity = 122/238 (51.26%), Postives = 167/238 (70.17%), Query Frame = 1 
Query:  277 QLRQLETVINQCVECGESNSVLVIGPRXXXXXXXXXXXXXDVYNNH--GSDYFYVYLSGLIHTDDRSALQDLARQLELENVIGDRVFGSFADNLAFILDALK-NDNGQSKSVILVLDEFDLFAYHKNQSLLYNLFDIAQSKQNPLCVIGLTCRLDVVELLEKRVKSRYSHRAILTFPSYSFEEYVDIVSSFLKLSEDFSCKKFRDRWNRNLDENLSEGSVCCEILLKQYNLQKDFQSL 981
            Q + L  ++ +    GESNSVL+IGPRGSGK+ L++  L ++        +   V+L+GL+  +D+ AL+++ RQL LENV+GD+VFGSFA+NL+F+L+ALK  D   S  VI +LDEFDLFA+HKNQ+LLYNLFDI+QS Q P+ VIGLTCRLD++ELLEKRVKSR+SHR I    S+ F +YV I    L L  +F  K F ++WN N+ + LSE     E+L K +N+ K+ +SL
Sbjct:   43 QYKHLSELLKRTALHGESNSVLIIGPRGSGKTMLINHALKELMEIEEVSENVLQVHLNGLLQINDKIALKEITRQLNLENVVGDKVFGSFAENLSFLLEALKKGDRTSSCPVIFILDEFDLFAHHKNQTLLYNLFDISQSAQTPIAVIGLTCRLDILELLEKRVKSRFSHRQIHLMNSFGFPQYVKIFKEQLSLPAEFPDKVFAEKWNENV-QYLSEDRSVQEVLQKHFNISKNLRSL 279
The following BLAST results are available for this feature:
BLAST of TCONS_00042771 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ORC44.004e-6851.26Origin recognition complex subunit 4 OS=Homo sapie... [more]
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