TCONS_00041438-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00041438-protein
Unique NameTCONS_00041438-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length222

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00041438-protein ID=TCONS_00041438-protein|Name=TCONS_00041438-protein|organism=Clytia hemisphaerica|type=polypeptide|length=222bp
MVAKTTLSESQLKQFLDTPPLGIDAILWEQAKKDNPDPKNLIPVPIMGFN
ELLTRLKHQQYQNTQHKRRLEILNEEISKLQSCQSTTIAKLAQYKRKHLE
LAHRTLQVMTQLETIRKGGYSIEPDEEQLRIQLESLQAELNAPMQFKGRL
NELISQIRLQSQVKKSSSSISYSLDEQAKHEAKQFLSKQQEALLQLVSII
NEDFEDLKTIESGMIDSLYIRR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_025411XLOC_025411Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00041438TCONS_00041438Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025712Nup54_alpha-helical_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 56..83
IPR025712Nucleoporin Nup54, alpha-helical domainPFAMPF13874Nup54coord: 20..156
e-value: 5.0E-41
score: 140.0

Blast
[Close]
BLAST of TCONS_00041438-protein vs. Swiss-Prot (Human)
Match: NUP54 (Nucleoporin p54 OS=Homo sapiens GN=NUP54 PE=1 SV=2)

HSP 1 Score: 245.358 bits (625), Expect = 5.351e-79
Identity = 119/220 (54.09%), Postives = 163/220 (74.09%), Query Frame = 0 
Query:    2 VAKTTLSESQLKQFLDTPPLGIDAILWEQAKKDNPDPKNLIPVPIMGFNELLTRLKHQQYQNTQHKRRLEILNEEISKLQSCQSTTIAKLAQYKRKHLELAHRTLQVMTQLETIRKGGYSIEPDEEQLRIQLESLQAELNAPMQFKGRLNELISQIRLQSQVKKSSSSISYSLDEQAKHEAKQFLSKQQEALLQLVSIINEDFEDLKTIESGMIDSLYIR 221
            + +T LS +Q+KQ L  PP G+D I+WEQAK DNPD + LIPVP++GF ELL RLK Q     QH+ RL+I++E+IS+LQ  Q+T++AK+AQYKRK ++L+HRTLQV+ + E  RK GY+I+ DEEQLR+QL+++Q ELNAP QFKGRLNEL+SQIR+Q+      S   Y +D     E KQ L +QQE L  L+SII +D ED+K +E G+ ++++IR
Sbjct:  283 MTRTELSPAQIKQLLQNPPAGVDPIIWEQAKVDNPDSEKLIPVPMVGFKELLRRLKVQDQMTKQHQTRLDIISEDISELQKNQTTSVAKIAQYKRKLMDLSHRTLQVLIKQEIQRKSGYAIQADEEQLRVQLDTIQGELNAPTQFKGRLNELMSQIRMQNHFGAVRSEERYYIDADLLREIKQHLKQQQEGLSHLISIIKDDLEDIKLVEHGLNETIHIR 502
The following BLAST results are available for this feature:
BLAST of TCONS_00041438-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NUP545.351e-7954.09Nucleoporin p54 OS=Homo sapiens GN=NUP54 PE=1 SV=2[more]
back to top