TCONS_00041438 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041438
Unique NameTCONS_00041438
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2209

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041438 ID=TCONS_00041438|Name=TCONS_00041438|organism=Clytia hemisphaerica|type=transcript|length=2209bp
AAAAAAGTTATCGAACATGCGGGAGTTACAGCTTCTTCACATGATATATT
TTCAGGTCAGAGATTGTGATATACGTTGTTGAGCGACAATCCAATGGTTC
CTCCAGACGTATCCTAGCAACCGAGCTTTACGCTTTCTTTAGTCAGCAAA
ATATCAAGGCACAACTTACGCAACTTGGAGTAGAGAACATGGTCGCAAAA
ACAACATTGAGCGAATCCCAATTGAAACAATTCCTCGACACTCCCCCTTT
AGGCATTGATGCAATTCTTTGggaacaagcaaaaaaagataatcCTGACC
CAAAAAAcTTGATACCTGTACCTATCATGGGGTTCAACGAACTTCTTACA
CGACTCAAACATCAACAATACCAAAATACTCAACACAAACGTCGCTTGGA
GATTTTGAATGAGGAAATTTCGAAGCTTCAATCATGCCAGTCAACCACTA
TCGCCAAACTCGCTCAATACAAACGAAAACATTTGGAACTTGCGCATCGA
ACTCTACAGGTGATGACGCAATTAGAAACGATTCGAAAAGGCGGTTATTC
CATTGAACCCGATGAAGAACAACTTAGaatccaACTGGAATCTTTACAAG
CTGAACTCAATGCGCCTATGCAATTCAAGGGTCGATTGAACGAGCTAATT
TCTCAAATTCGATTGCAATCACAAGTGAAAAAGAGTTCAAGCAGCATCTC
CTACTCACTTGACGAGCAGGCCAAACACGAAGCTAAACAATTCTTATCGA
AACAACAAGAAGCTTTGCTACAACTCGTTTCCATCATCAACGAAGACTTT
GAAGATTTGAAAACCATCGAAAGTGGAATGATCGACTCACTCTACATCAG
GAGGTGATACAACCTCTCTGACTAATCGCTTTAAAGGAGATTTCTCCAGG
CTAACACCGCCTCCCTTGGAAAGTGTTTTNatgtaaaatttttttctgga
agagcccattgcagCCTTTTTCACGTTACTTATATACGCCAGAGAATATA
ATCCGGTGCTATCAGCAATTAGCTTAAAAAGCCGATGATACGCTGGGAAT
CAGGTTGGTAGACTATCTATCATTCCTATTCCCACTCTTGGAttggaaat
gaagccacttatttcccatctcaAACACGTGGCCCGAGTGGTTTNATCGA
AAGACTATTTTACCTTCCACAAAGGTTCACAATGCAATGTGGCTATAATT
TTAAATGACAATTAATGATAAGATTTACTATTTAAAGTATTAATTCATAT
CGAATTTTGCCACGCGAATATGGCTGTCTAACTACGATAGAGTATTCAAA
TTTAGGTACCCGACCTATACCTTACTATACCTTATCGAATTTTACTTGCC
ATGTTTTTTATACCAAGAAAAAGGGATTTTTNGACCTCTGACGGCGAATA
GcaattctattcagcgcgcactCAGTGCAGAGAAAAGAAATCATGAAGAC
AATCCAAGGTTTCGGATTAAGTTcaaagtcgatatttttattcgcgCCGT
TGAAAATATAactaaaaaatgtcatcaatgcttttaaaAGAGTCagcgat
agagaatcataatATAAAGatatgtctattatttcgattccattgaagtt
acatttccataatttgatggtttagtaattactgttttgtacatttggga
atcatgcagaagatttatttttaaagaaactcaTTCTAagtacacttgga
ggtttctggggaattcgtcaaTAGTAATCATCTTTACTTTAGAGACAAAG
GGGAATGTCACTTTAAAATATGTAGGTTTGGCGGGACCTAGGTCGGAAAT
GAACAATAAACCCTCCCCCTACAGCTAACGAtcataggaatataggaatg
taggaatgtaggtatataggaatgtaggtatataggaatattgGAATgtg
ggtatataggtatataggaatgaaagaatgtaggtatatatgaatatagg
aatgtagtggaatgtaggaatgtaggaatgtaggaatgtatgaatatagg
aatgtaggtatataggaatataggaatgtaggtatatatgaatataggaa
tgtagtgGAATGTatgaatataggaatgtaggtatataggaatttatgaa
tataggaatataggtatataggaatataggaatgtaggaatgtaggtata
taggaatacgGTAGATATTATCTCCTTAATGTTATAGTCAAGATAGATTA
AGTAGTAgc
Run BLAST on NCBI

protein sequence of TCONS_00041438-protein

>TCONS_00041438-protein ID=TCONS_00041438-protein|Name=TCONS_00041438-protein|organism=Clytia hemisphaerica|type=polypeptide|length=222bp
MVAKTTLSESQLKQFLDTPPLGIDAILWEQAKKDNPDPKNLIPVPIMGFN
ELLTRLKHQQYQNTQHKRRLEILNEEISKLQSCQSTTIAKLAQYKRKHLE
LAHRTLQVMTQLETIRKGGYSIEPDEEQLRIQLESLQAELNAPMQFKGRL
NELISQIRLQSQVKKSSSSISYSLDEQAKHEAKQFLSKQQEALLQLVSII
NEDFEDLKTIESGMIDSLYIRR
Run BLAST on NCBI

transcript from alignment at sc0002877:227..8365+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041438 ID=TCONS_00041438|Name=TCONS_00041438|organism=Clytia hemisphaerica|type=transcript|length=8139bp|location=Sequence derived from alignment at sc0002877:227..8365+ (Clytia hemisphaerica)
AAAAAAGTTATCGAACATGCGGGAGTTACAGCTTCTTCACATGATATATT
TTCAGGTCAGAGATTGTGATATACGTTGTTGAGCGACAATCCAATGGTTC
CTCCAGACGTATCCTAGCAACCGAGCTTTACGCTTTCTTTAGTCAGCAAA
ATATCAAGGTAATATTCATTCTGAAGTATTCGGAGAAGAATTATTTGAAT
TATTCATCAATTTCGAATTCATAAGTGATTATGACATGACTTGTTATTTT
TTTGCGAAACTTTGATGAATGAGATTTTTTCGAGTGTCCGTCCTACGCGA
AAGATAAATCAAACATCGATGAGTGAGCTCTGATAAAAAGCAATCACGCT
ATCGATTTTGAAGTAAGTCCCTTTATATAGCACATACAGTAAAATCATCA
AAAGATGGTTTACCGCTAAATCAAAACCTTGCAATTATTTTCTCAGGCAC
AACTTACGCAACTTGGAGTAGAGAACATGGTCGCAAAAACAACATTGAGC
GAATCCCAATTGAAACAATTCCTCGACACTCCCCCTTTAGGTTTGTATTT
TGTCCCTGTGAAAAATCGGGCTTGAAAATTTATCTACATCGGAAACTGTC
AACCACTAACATTTTGAAgtatttcgaaaaaaacattttcattacAACAG
ATTTTTTACTGATGATGGCACTCTAAAAATAGANAAACTGTCAACCACTA
ACATTTTGAAgtatttcgaaaaaaacattttcattacAACAGATTTTTTA
CTGATGATGGCACTCTAAAAATAGACTTCAAAATGAACCAAAAGCAGCTT
CTGTTAAATTAAATCTATTACACAAGTTGTATGGAAAGATtcatttattt
aatttaaaaataaacacccttttttattaaaattaattttgtttgacttt
gattttttttctttccccgTTAATTTTCAGTAACTTTCTGAATTTTCGTT
TTCCAGGCATTGATGCAATTCTTTGggaacaagcaaaaaaagataatcCT
GACCCAAAAAAGTATGTANactttgattttttttctttccccgTTAATTT
TCAGTAACTTTCTGAATTTTCGTTTTCCAGGCATTGATGCAATTCTTTGg
gaacaagcaaaaaaagataatcCTGACCCAAAAAAGTATGTATTAATCCT
GCTATCCTTCTACCCCtttccatttttttgctcaTATCCTTATCTCCCGC
AAAGAAGTTATTTTGCTCGTTCCGTAGTATTTTGACAGgttaatattttg
tattttcgtgTTGTAAAAGTACGGCCTTTGTTGAATATCATCTTTAATCT
TGAGTTAAAAGTTTGCTCGTaacattttattcaattttaagaTCTTACTA
TTTAATAATATTATTAAAACATGGGCTTCATCTTCAGATGAATAATGCTC
GGGGTTCTAAAGGTTGTAGGGAGGGTTGACGAGTATACGGTCAAAGTATG
ATGACATATGACCTTCAGCATAAATGCTAAAAGACACATCCAAAAGGGCT
TGGAACTTTTGCTCGTTCCGTAATATTTTCAACCTTGAAAATGTTGACAG
CTTCAGCCAGCCTTCTGAAGGGCACCCTGGGTAGTTCTTTACCTATACCT
AAATTGTCCCATGTCGGTTTCCTTGGATTTCTAAAAAGTGAGTAGTGACA
CTATCCTAAACCAGTTTTCAATTTCAAACCATCAGCTcatttttttgctc
aagttgcttcttgtttttatttagcTTGATACCTGTACCTATCATGGGGT
TCAACGAACTTCTTACACGACTCAAACATCAACAATACCAAAATACTCAA
CACAAACGTCGCTTGGAGGtactagtagggggaaatttgtaaaatcgctc
gatttttttagtcaaagcacttgttatacatttttggaaagctaaggggt
aggggaatcaaaataacttgggtgggaattttttttcggacactttggtg
tgattttcggacaaatacgacggtctcaggcaaaaatcatagggtgaaaa
attaatgaaaattttagctgaagaaaacggagacctgttgtatatttttg
gaaagcgatattgcgagtataggtgatttctttacctaactcgagatatt
gagcttccgaaagcgcaaaaactggacaaaacagctactctaggggctga
gttaggtcccatttgcgcatcggcgtatagtcattttttcttttgatcat
gaaagtatagtccttgaagagtcagaaaatgtgtgtggcgttatttggat
caggcacaaatttccataatggcggattttagactttcaaccctttttag
ccctcctgcttgaaaaatttttttttttaactttaaacatagacatatat
tatataccaatcgatcacaaattttatgctgattaagaaaaaggtcagaa
tcatggtctgaaaatttcgttatctggagatatgaagtattttcgttttc
aaaacttagaaaacgtaagtacttcgtatctcttgataacgaaatggttc
tgacctttttcttaatcagcataaaatttctgatcgattagtatgtaata
tgcagggttttaagctcaaaaaatatttttcttaggctagcagagcctaa
gagcccatgtgacgaaagaaaattttgaatccgcaaaagaaaaaaggact
atacgccgatgcgcatacgggacctaactcagcccctagagtaagcTGTT
TCTGgcagaaaaacactgaaaaacactttaAGGAtgtaatatctcgagtt
aggtaaagaaatcacctatactcgcaatatatcactaatcttaatttttt
gagagctttccaaaaatatacaacaggtctccgttttctCAAGCTAAAAT
GTTCATTAAatttttcaccctatgatttttgcctgagaccgtcgtatttg
tccgaaaatcacacaaaagtgtccgaaaaaaaattagcacccaagttatt
ttgattcccctaccccttagctttccaaaaatgtataacaagtgctttga
ctaaaaaagtcgagcgacctcaaaaaaacgaacaaatttccccctactat
acgAAGAATTTACATTATTTTTAAACTCTCTCAAAGCTCACATCTTTTAA
GCCTGTTTAAGCTCCCATTTTCTCGCGTAAGTCGAGTTGAAAAACTTGTT
TTATGGTTCGTGCTACTGCAGGCTTTTGTCTTTATTTTTGACGAGCCTGG
ATGAACTTGTTGTTTGAGAATTTTCAGCCTAGATCTTTGTATTATAAAAT
ATGGCTTTCAAATCAAGCAAATTTCTCGTATGAAAATTCATCAAGAATTC
AGTTGATTGTGAATGCTTTTCATCGTATTTGCTTTGTGATATAATAGATT
TTGAATGAGGAAATTTCGAAGCTTCAATCATGCCAGTCAACCACTATCGC
CAAACTCGCTCAATACAAACGAAAACATTTGGAACTTGCGCATCGAACTC
TACAGGTATAAATTCTTGATTTAATTAATTGCTGTCTGCTGTAgctaaaa
aatattcattctaaGACTGtattaaaatcatcaaagtggTCTGTTATACG
TGGCAGATCATATTACAGGACCATGGCTTTAGAATGAACAGGTGGCGTGC
TTGGAGTAATCAGGATCTGCTCAGAGAATACCTTACTACACTTATATAAC
TAATCAAGTTTTACATCAAAAgttaattttaagattttgagatTCTACAG
GGTTTCAATTTTATGACATGCATGCACAAAAAactcataaaacctgatct
agtGAAGGTTTGAtgataaaatttggtatacatgttGCTTATaagattat
atatatatatatatattaataAGTCGAAAATTTTTTCCTGTGAGATATTC
ACAAAATAGTAGGGGGCCAAGCCTGGGATTCCGTGACatcttttctacga
cctaaccatttttagtccatccgaaagaacagtatattataagatatttt
tgagagggactaaaaatggttaggtcgtagaaaagatgtcacggaatccc
aggcttggccccctactaaaaAGGCATCAGGTTGGTGGAAAACACCCATC
GGGAGGGGGTGAATGTGACAATTATTAACGCGAAAAAAGGGTTTTCGACA
ATAATGCTGGTTCAAATTGTGTTAAATGATTGTAATTAACGCGACGGTAA
GCGTTACTAACTTGAGTAGATATATAAGTGTGATACTTCCGTCAGTGAAT
ATTTCTTTCTTAATCACTTTTTCTGACCAGTCGAGAATTCACTTTCAGCT
CAACTGAGTGGCAATTGTGTTCACGGGTTTCACACAGACATCTCCCTTAA
TACAGTTGAATCTTTTAACTTGAACCTCTATAGCTTCaatgtctccttaa
ctggaAAAAGATTTctagtcccttcagttaacaatgtgcTTACTCCATAT
CTTGagcagtggcgtggtggcagggggggccaggggggccaggccccccc
ccagcggagcccttttgagaaggggcgcccaaaaataagggNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaggattt
ttcaggcgcccatatcgaaagattgacaaataaaaaaacaaaaatggcgc
ccctcatcacctcaaaaactcaaaattttctggctcgcttcgctcTCGCA
CTCCctttttgtgttcataatgagcgtatagagaggggcgccaaagacaa
aaaatccttaaaaagggcgccatatttgccttggccaccccagagaaatt
ttcccaccacgccactgatcttgagatttccttaactcgaacaaatttgt
gttctagtgcgtgttcgagttataaagactTGTAGTAGAGCAAATGTTTG
CGAATGGCATAGTTTAGGTTCGATATGTTGATTTTCGAAATGTTCTGGTT
CTGGTGGCTTGTCTGAAAACGACATCAGAGCGACTGTATTCCCTTGATAC
CTACATTCAACGGGCAAAAATCATAACTATTACTGTGTTTTTGTTTAGGT
GATGACGCAATTAGAAACGATTCGAAAAGGCGGTTATTCCATTGAACCCG
ATGAAGAACAACTTAGGTACAAACGAACATTCATATTTATAATTGGAAAA
AAAGGGCTGAGGGAGGGTGTGTGGTATAAATCTTTCGCTGACAGAAACTT
AATTGATAATttgttttaacaattttatCTTATCAAGGCAATTTGCGTAC
GTTTACGCACGCggaaattatttaaaaacattgaaaatctATGAAGCTTT
GAAGTAAATACCGTTTTTAGGTTTAAGGAACATatttgtttcatattttt
cattttgattaaaCGATTCacgaaaatataacaaaatttgTTTCTTCTCG
GAAACGCAAAATTTTGTCGCAAATTTTATGATTTCTCTGGATTTCTTGAC
CTAGAGAAAGTTTTTGCTAACAAAAGTAGCTCACGTGATCTGAAAATGAC
TGTACCCTCGCTCAAATAGATTTGCCACatattcaaaataatctttgatt
tgagatcatcttcattttctctttataaaaaacttttttttttagaatcc
aACTGGAATCTTTACAAGCTGAACTCAATGCGCCTATGCAATTCAAGGTA
TATTTTGTTTGCAAACCAAACAAACTTAATCGACGCTATTTTATTAGTTC
AGTGTAAGGGTGTTTACATTTTTTCACAATACCATTCTTACGCTTGTGTT
TTCGATACTGTCGTCGTACGAAATGTTCCCCGTAAATTCATTTCCAATCT
CCTCAAAAGCAGACCTCGCCGAACGGTTGATGGGTGTACTGTCAAAGAAT
TGATACACATTTAGCATATTGATTACTGAGCTACTGAGATAGAGATTCGA
CTCTCAACTCTGGAATgaagacatgaaaatattttctcgtATATCAACTC
GTTATTCCTTGTACTTTTCAGGGTCGATTGAACGAGCTAATTTCTCAAAT
TCGATTGCAATCACAAGTGAAAAAGAGTTCAAGCAGCATCTCCTACTCAC
TTGACGAGCAGGCCAAACACGAAGCTAAACAAGTAAGCCTTCTTCTCAAT
ATCATATTATGTTTCATgcaaagaaagaaaacaaacagTAACACTAAGCC
TTGGAATTCTTGTGCATAGAGTGTTGCATTATAGAAAAGACACTTCCTTC
TGGCAGCTCCTATTTATGGCTTATACAAACCTaataattaagaacaatct
tagCCTCATAATTCAAAATTGGCTCAGAAAATTCTGATTTTATTTCTGTT
GTATGTCAATAAGTGAATAAAGTAAGTACAGTGTATTAAGAacgttttaa
gaacattttaaagacattttaagaacatttaaccctgaaaatcacgaaaa
aataaatacagccatgtattatttttttgaaatagtttATCTATCAAAAC
TTCATGAAGATTGATTCTAAACCCCTAGCATACTCATGTCTCGAATAGCT
ACTGAAATATTATAGGACCCGAAATAAGGATAAAATCTTATCGCTATTTT
CATGGAGATCCTTCATTTGTAGACAATGCGAAATTTTGACAATGaatatg
attttcttttttattgtcaGTTCTTATCGAAACAACAAGAAGCTTTGCTA
CAACTCGTTTCCATCATCAACGAAGACTTTGAAGATTTGAAAACCATCGA
AAGTGGAATGATCGACTCACTCTACATCAGGAGGTGATACAACCTCTCTG
ACTAATCGCTTTAAAGGAGATTTCTCCAGGCTAACACCGCCTCCCTTGGA
AAGTGTTTTNatgtaaaatttttttctggaagagcccattgcagCCTTTT
TCACGTTACTTATATACGCCAGAGAATATAATCCGGTGCTATCAGCAATT
AGCTTAAAAAGCCGATGATACGCTGGGAATCAGGTTGGTAGACTATCTAT
CATTCCTATTCCCACTCTTGGAttggaaatgaagccacttatttcccatc
tcaAACACGTGGCCCGAGTGGTTTNATCGAAAGACTATTTTACCTTCCAC
AAAGGTTCACAATGCAATGTGGCTATAATTTTAAATGACAATTAATGATA
AGATTTACTATTTAAAGTATTAATTCATATCGAATTTTGCCACGCGAATA
TGGCTGTCTAACTACGATAGAGTATTCAAATTTAGGTACCCGACCTATAC
CTTACTATACCTTATCGAATTTTACTTGCCATGTTTTTTATACCAAGAAA
AAGGGATTTTTNGACCTCTGACGGCGAATAGcaattctattcagcgcgca
ctCAGTGCAGAGAAAAGAAATCATGAAGACAATCCAAGGTTTCGGATTAA
GTTcaaagtcgatatttttattcgcgCCGTTGAAAATATAactaaaaaat
gtcatcaatgcttttaaaAGAGTCagcgatagagaatcataatATAAAGa
tatgtctattatttcgattccattgaagttacatttccataatttgatgg
tttagtaattactgttttgtacatttgggaatcatgcagaagatttattt
ttaaagaaactcaTTCTAagtacacttggaggtttctggggaattcgtca
aTAGTAATCATCTTTACTTTAGAGACAAAGGGGAATGTCACTTTAAAATA
TGTAGGTTTGGCGGGACCTAGGTCGGAAATGAACAATAAACCCTCCCCCT
ACAGCTAACGAtcataggaatataggaatgtaggaatgtaggtatatagg
aatgtaggtatataggaatattgGAATgtgggtatataggtatataggaa
tgaaagaatgtaggtatatatgaatataggaatgtagtggaatgtaggaa
tgtaggaatgtaggaatgtatgaatataggaatgtaggtatataggaata
taggaatgtaggtatatatgaatataggaatgtagtgGAATGTatgaata
taggaatgtaggtatataggaatttatgaatataggaatataggtatata
ggaatataggaatgtaggaatgtaggtatataggaatacgGTAGATATTA
TCTCCTTAATGTTATAGTCAAGATAGATTAAGTAGTAgc

Coding sequence (CDS) from alignment at sc0002877:227..8365+

>TCONS_00041438 ID=TCONS_00041438|Name=TCONS_00041438|organism=Clytia hemisphaerica|type=CDS|length=5352bp|location=Sequence derived from alignment at sc0002877:227..8365+ (Clytia hemisphaerica)
ATGGTCGCAAAAACAACATTGAGCGAATCCCAATTGAAACAATTCCTCGA
CACTCCCCCTTTAGGCATTGATGCAATTCTTTGggaacaagcaaaaaaag
ataatcCTGACCCAAAAAAcTTGATACCTGTACCTATCATGGGGTTCAAC
GAACTTCTTACACGACTCAAACATCAACAATACCAAAATACTCAACACAA
ACGTCGCTTGGAGATTTTGAATGAGGAAATTTCGAAGCTTCAATCATGCC
AGTCAACCACTATCGCCAAACTCGCTCAATACAAACGAAAACATTTGGAA
CTTGCGCATCGAACTCTACAGGTGATGACGCAATTAGAAACGATTCGAAA
AGGCGGTTATTCCATTGAACCCGATGAAGAACAACTTAGaatccaACTGG
AATCTTTACAAGCTGAACTCAATGCGCCTATGCAATTCAAGGGTCGATTG
AACGAGCTAATTTCTCAAATTCGATTGCAATCACAAGTGAAAAAGAGTTC
AAGCAGCATCTCCTACTCACTTGACGAGCAGGCCAAACACGAAGCTAAAC
AATTCTTATCGAAACAACAAGAAGCTTTGCTACAACTCGTTTCCATCATC
AACGAAGACTTTGAAGATTTGAAAACCATCGAAAGTGGAATGATCGACTC
ACTCTACATCAGGAGGTGAATGGTCGCAAAAACAACATTGAGCGAATCCC
AATTGAAACAATTCCTCGACACTCCCCCTTTAGGCATTGATGCAATTCTT
TGggaacaagcaaaaaaagataatcCTGACCCAAAAAAcTTGATACCTGT
ACCTATCATGGGGTTCAACGAACTTCTTACACGACTCAAACATCAACAAT
ACCAAAATACTCAACACAAACGTCGCTTGGAGATTTTGAATGAGGAAATT
TCGAAGCTTCAATCATGCCAGTCAACCACTATCGCCAAACTCGCTCAATA
CAAACGAAAACATTTGGAACTTGCGCATCGAACTCTACAGGTGATGACGC
AATTAGAAACGATTCGAAAAGGCGGTTATTCCATTGAACCCGATGAAGAA
CAACTTAGaatccaACTGGAATCTTTACAAGCTGAACTCAATGCGCCTAT
GCAATTCAAGGGTCGATTGAACGAGCTAATTTCTCAAATTCGATTGCAAT
CACAAGTGAAAAAGAGTTCAAGCAGCATCTCCTACTCACTTGACGAGCAG
GCCAAACACGAAGCTAAACAATTCTTATCGAAACAACAAGAAGCTTTGCT
ACAACTCGTTTCCATCATCAACGAAGACTTTGAAGATTTGAAAACCATCG
AAAGTGGAATGATCGACTCACTCTACATCAGGAGGTGAATGGTCGCAAAA
ACAACATTGAGCGAATCCCAATTGAAACAATTCCTCGACACTCCCCCTTT
AGGCATTGATGCAATTCTTTGggaacaagcaaaaaaagataatcCTGACC
CAAAAAAcTTGATACCTGTACCTATCATGGGGTTCAACGAACTTCTTACA
CGACTCAAACATCAACAATACCAAAATACTCAACACAAACGTCGCTTGGA
GATTTTGAATGAGGAAATTTCGAAGCTTCAATCATGCCAGTCAACCACTA
TCGCCAAACTCGCTCAATACAAACGAAAACATTTGGAACTTGCGCATCGA
ACTCTACAGGTGATGACGCAATTAGAAACGATTCGAAAAGGCGGTTATTC
CATTGAACCCGATGAAGAACAACTTAGaatccaACTGGAATCTTTACAAG
CTGAACTCAATGCGCCTATGCAATTCAAGGGTCGATTGAACGAGCTAATT
TCTCAAATTCGATTGCAATCACAAGTGAAAAAGAGTTCAAGCAGCATCTC
CTACTCACTTGACGAGCAGGCCAAACACGAAGCTAAACAATTCTTATCGA
AACAACAAGAAGCTTTGCTACAACTCGTTTCCATCATCAACGAAGACTTT
GAAGATTTGAAAACCATCGAAAGTGGAATGATCGACTCACTCTACATCAG
GAGGTGAATGGTCGCAAAAACAACATTGAGCGAATCCCAATTGAAACAAT
TCCTCGACACTCCCCCTTTAGGCATTGATGCAATTCTTTGggaacaagca
aaaaaagataatcCTGACCCAAAAAAcTTGATACCTGTACCTATCATGGG
GTTCAACGAACTTCTTACACGACTCAAACATCAACAATACCAAAATACTC
AACACAAACGTCGCTTGGAGATTTTGAATGAGGAAATTTCGAAGCTTCAA
TCATGCCAGTCAACCACTATCGCCAAACTCGCTCAATACAAACGAAAACA
TTTGGAACTTGCGCATCGAACTCTACAGGTGATGACGCAATTAGAAACGA
TTCGAAAAGGCGGTTATTCCATTGAACCCGATGAAGAACAACTTAGaatc
caACTGGAATCTTTACAAGCTGAACTCAATGCGCCTATGCAATTCAAGGG
TCGATTGAACGAGCTAATTTCTCAAATTCGATTGCAATCACAAGTGAAAA
AGAGTTCAAGCAGCATCTCCTACTCACTTGACGAGCAGGCCAAACACGAA
GCTAAACAATTCTTATCGAAACAACAAGAAGCTTTGCTACAACTCGTTTC
CATCATCAACGAAGACTTTGAAGATTTGAAAACCATCGAAAGTGGAATGA
TCGACTCACTCTACATCAGGAGGTGAATGGTCGCAAAAACAACATTGAGC
GAATCCCAATTGAAACAATTCCTCGACACTCCCCCTTTAGGCATTGATGC
AATTCTTTGggaacaagcaaaaaaagataatcCTGACCCAAAAAAcTTGA
TACCTGTACCTATCATGGGGTTCAACGAACTTCTTACACGACTCAAACAT
CAACAATACCAAAATACTCAACACAAACGTCGCTTGGAGATTTTGAATGA
GGAAATTTCGAAGCTTCAATCATGCCAGTCAACCACTATCGCCAAACTCG
CTCAATACAAACGAAAACATTTGGAACTTGCGCATCGAACTCTACAGGTG
ATGACGCAATTAGAAACGATTCGAAAAGGCGGTTATTCCATTGAACCCGA
TGAAGAACAACTTAGaatccaACTGGAATCTTTACAAGCTGAACTCAATG
CGCCTATGCAATTCAAGGGTCGATTGAACGAGCTAATTTCTCAAATTCGA
TTGCAATCACAAGTGAAAAAGAGTTCAAGCAGCATCTCCTACTCACTTGA
CGAGCAGGCCAAACACGAAGCTAAACAATTCTTATCGAAACAACAAGAAG
CTTTGCTACAACTCGTTTCCATCATCAACGAAGACTTTGAAGATTTGAAA
ACCATCGAAAGTGGAATGATCGACTCACTCTACATCAGGAGGTGAATGGT
CGCAAAAACAACATTGAGCGAATCCCAATTGAAACAATTCCTCGACACTC
CCCCTTTAGGCATTGATGCAATTCTTTGggaacaagcaaaaaaagataat
cCTGACCCAAAAAAcTTGATACCTGTACCTATCATGGGGTTCAACGAACT
TCTTACACGACTCAAACATCAACAATACCAAAATACTCAACACAAACGTC
GCTTGGAGATTTTGAATGAGGAAATTTCGAAGCTTCAATCATGCCAGTCA
ACCACTATCGCCAAACTCGCTCAATACAAACGAAAACATTTGGAACTTGC
GCATCGAACTCTACAGGTGATGACGCAATTAGAAACGATTCGAAAAGGCG
GTTATTCCATTGAACCCGATGAAGAACAACTTAGaatccaACTGGAATCT
TTACAAGCTGAACTCAATGCGCCTATGCAATTCAAGGGTCGATTGAACGA
GCTAATTTCTCAAATTCGATTGCAATCACAAGTGAAAAAGAGTTCAAGCA
GCATCTCCTACTCACTTGACGAGCAGGCCAAACACGAAGCTAAACAATTC
TTATCGAAACAACAAGAAGCTTTGCTACAACTCGTTTCCATCATCAACGA
AGACTTTGAAGATTTGAAAACCATCGAAAGTGGAATGATCGACTCACTCT
ACATCAGGAGGTGAATGGTCGCAAAAACAACATTGAGCGAATCCCAATTG
AAACAATTCCTCGACACTCCCCCTTTAGGCATTGATGCAATTCTTTGgga
acaagcaaaaaaagataatcCTGACCCAAAAAAcTTGATACCTGTACCTA
TCATGGGGTTCAACGAACTTCTTACACGACTCAAACATCAACAATACCAA
AATACTCAACACAAACGTCGCTTGGAGATTTTGAATGAGGAAATTTCGAA
GCTTCAATCATGCCAGTCAACCACTATCGCCAAACTCGCTCAATACAAAC
GAAAACATTTGGAACTTGCGCATCGAACTCTACAGGTGATGACGCAATTA
GAAACGATTCGAAAAGGCGGTTATTCCATTGAACCCGATGAAGAACAACT
TAGaatccaACTGGAATCTTTACAAGCTGAACTCAATGCGCCTATGCAAT
TCAAGGGTCGATTGAACGAGCTAATTTCTCAAATTCGATTGCAATCACAA
GTGAAAAAGAGTTCAAGCAGCATCTCCTACTCACTTGACGAGCAGGCCAA
ACACGAAGCTAAACAATTCTTATCGAAACAACAAGAAGCTTTGCTACAAC
TCGTTTCCATCATCAACGAAGACTTTGAAGATTTGAAAACCATCGAAAGT
GGAATGATCGACTCACTCTACATCAGGAGGTGAATGGTCGCAAAAACAAC
ATTGAGCGAATCCCAATTGAAACAATTCCTCGACACTCCCCCTTTAGGCA
TTGATGCAATTCTTTGggaacaagcaaaaaaagataatcCTGACCCAAAA
AAcTTGATACCTGTACCTATCATGGGGTTCAACGAACTTCTTACACGACT
CAAACATCAACAATACCAAAATACTCAACACAAACGTCGCTTGGAGATTT
TGAATGAGGAAATTTCGAAGCTTCAATCATGCCAGTCAACCACTATCGCC
AAACTCGCTCAATACAAACGAAAACATTTGGAACTTGCGCATCGAACTCT
ACAGGTGATGACGCAATTAGAAACGATTCGAAAAGGCGGTTATTCCATTG
AACCCGATGAAGAACAACTTAGaatccaACTGGAATCTTTACAAGCTGAA
CTCAATGCGCCTATGCAATTCAAGGGTCGATTGAACGAGCTAATTTCTCA
AATTCGATTGCAATCACAAGTGAAAAAGAGTTCAAGCAGCATCTCCTACT
CACTTGACGAGCAGGCCAAACACGAAGCTAAACAATTCTTATCGAAACAA
CAAGAAGCTTTGCTACAACTCGTTTCCATCATCAACGAAGACTTTGAAGA
TTTGAAAACCATCGAAAGTGGAATGATCGACTCACTCTACATCAGGAGGT
GA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025411XLOC_025411Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041438-exon-sc0002877-1491911889:227..384TCONS_00041438-exon-sc0002877-1491911889:227..384Clytia hemisphaericaexon
TCONS_00041438-exon-sc0002877-1510915933:227..384TCONS_00041438-exon-sc0002877-1510915933:227..384Clytia hemisphaericaexon
TCONS_00041438-exon-sc0002877-1575043694:227..384TCONS_00041438-exon-sc0002877-1575043694:227..384Clytia hemisphaericaexon
TCONS_00041438-exon-sc0002877-1491911889:673..766TCONS_00041438-exon-sc0002877-1491911889:673..766Clytia hemisphaericaexon
TCONS_00041438-exon-sc0002877-1510915933:673..766TCONS_00041438-exon-sc0002877-1510915933:673..766Clytia hemisphaericaexon
TCONS_00041438-exon-sc0002877-1575043694:673..766TCONS_00041438-exon-sc0002877-1575043694:673..766Clytia hemisphaericaexon
TCONS_00041438-exon-sc0002877-1491911889:1307..1361TCONS_00041438-exon-sc0002877-1491911889:1307..1361Clytia hemisphaericaexon
TCONS_00041438-exon-sc0002877-1510915933:1307..1361TCONS_00041438-exon-sc0002877-1510915933:1307..1361Clytia hemisphaericaexon
TCONS_00041438-exon-sc0002877-1575043694:1307..1361TCONS_00041438-exon-sc0002877-1575043694:1307..1361Clytia hemisphaericaexon
TCONS_00041438-exon-sc0002877-1491911889:1951..2044TCONS_00041438-exon-sc0002877-1491911889:1951..2044Clytia hemisphaericaexon
TCONS_00041438-exon-sc0002877-1510915933:1951..2044TCONS_00041438-exon-sc0002877-1510915933:1951..2044Clytia hemisphaericaexon
TCONS_00041438-exon-sc0002877-1575043694:1951..2044TCONS_00041438-exon-sc0002877-1575043694:1951..2044Clytia hemisphaericaexon
TCONS_00041438-exon-sc0002877-1491911889:3574..3681TCONS_00041438-exon-sc0002877-1491911889:3574..3681Clytia hemisphaericaexon
TCONS_00041438-exon-sc0002877-1510915933:3574..3681TCONS_00041438-exon-sc0002877-1510915933:3574..3681Clytia hemisphaericaexon
TCONS_00041438-exon-sc0002877-1575043694:3574..3681TCONS_00041438-exon-sc0002877-1575043694:3574..3681Clytia hemisphaericaexon
TCONS_00041438-exon-sc0002877-1491911889:5325..5392TCONS_00041438-exon-sc0002877-1491911889:5325..5392Clytia hemisphaericaexon
TCONS_00041438-exon-sc0002877-1510915933:5325..5392TCONS_00041438-exon-sc0002877-1510915933:5325..5392Clytia hemisphaericaexon
TCONS_00041438-exon-sc0002877-1575043694:5325..5392TCONS_00041438-exon-sc0002877-1575043694:5325..5392Clytia hemisphaericaexon
TCONS_00041438-exon-sc0002877-1491911889:5872..5923TCONS_00041438-exon-sc0002877-1491911889:5872..5923Clytia hemisphaericaexon
TCONS_00041438-exon-sc0002877-1510915933:5872..5923TCONS_00041438-exon-sc0002877-1510915933:5872..5923Clytia hemisphaericaexon
TCONS_00041438-exon-sc0002877-1575043694:5872..5923TCONS_00041438-exon-sc0002877-1575043694:5872..5923Clytia hemisphaericaexon
TCONS_00041438-exon-sc0002877-1491911889:6248..6358TCONS_00041438-exon-sc0002877-1491911889:6248..6358Clytia hemisphaericaexon
TCONS_00041438-exon-sc0002877-1510915933:6248..6358TCONS_00041438-exon-sc0002877-1510915933:6248..6358Clytia hemisphaericaexon
TCONS_00041438-exon-sc0002877-1575043694:6248..6358TCONS_00041438-exon-sc0002877-1575043694:6248..6358Clytia hemisphaericaexon
TCONS_00041438-exon-sc0002877-1491911889:6897..8365TCONS_00041438-exon-sc0002877-1491911889:6897..8365Clytia hemisphaericaexon
TCONS_00041438-exon-sc0002877-1510915933:6897..8365TCONS_00041438-exon-sc0002877-1510915933:6897..8365Clytia hemisphaericaexon
TCONS_00041438-exon-sc0002877-1575043694:6897..8365TCONS_00041438-exon-sc0002877-1575043694:6897..8365Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041438-proteinTCONS_00041438-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002877supercontigsc0002877:227..8365 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
19.6192	18.9761	27.1748	31.928	38.8933	29.0521	20.5483	21.0092	17.3549	16.1816	18.1156	17.6957	18.0385	22.2494	8.47116	9.11787	8.50925	9.54064	5.16677	4.52856	7.42636	6.82636	12.1017	10.1886	27.4569	25.9383	3.14989	3.16696	5.83772	7.53243
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR025712Nup54_alpha-helical_dom
Blast
[Close]
BLAST of TCONS_00041438 vs. Swiss-Prot (Human)
Match: NUP54 (Nucleoporin p54 OS=Homo sapiens GN=NUP54 PE=1 SV=2)

HSP 1 Score: 293.123 bits (749), Expect = 1.772e-89
Identity = 148/266 (55.64%), Postives = 197/266 (74.06%), Query Frame = 3 
Query:   54 RSEIVIYVVERQSNGSSRRILATELYAFFSQQNIKAQLTQLGVENMVAKTTLSESQLKQFLDTPPLGIDAILWEQAKKDNPDPKNLIPVPIMGFNELLTRLKHQQYQNTQHKRRLEILNEEISKLQSCQSTTIAKLAQYKRKHLELAHRTLQVMTQLETIRKGGYSIEPDEEQLRIQLESLQAELNAPMQFKGRLNELISQIRLXXXXXXXXXXXXXXLDEQAKHEAKQFLSKQQEALLQLVSIINEDFEDLKTIESGMIDSLYIR 851
            ++E+VIYVVER  NG+SRR+ AT LYA F Q NIK QL QLGV   + +T LS +Q+KQ L  PP G+D I+WEQAK DNPD + LIPVP++GF ELL RLK Q     QH+ RL+I++E+IS+LQ  Q+T++AK+AQYKRK ++L+HRTLQV+ + E  RK GY+I+ DEEQLR+QL+++Q ELNAP QFKGRLNEL+SQIR+Q+      S   Y +D     E KQ L +QQE L  L+SII +D ED+K +E G+ ++++IR
Sbjct:  237 QTEVVIYVVERSPNGTSRRVPATTLYAHFEQANIKTQLQQLGVTLSMTRTELSPAQIKQLLQNPPAGVDPIIWEQAKVDNPDSEKLIPVPMVGFKELLRRLKVQDQMTKQHQTRLDIISEDISELQKNQTTSVAKIAQYKRKLMDLSHRTLQVLIKQEIQRKSGYAIQADEEQLRVQLDTIQGELNAPTQFKGRLNELMSQIRMQNHFGAVRSEERYYIDADLLREIKQHLKQQQEGLSHLISIIKDDLEDIKLVEHGLNETIHIR 502
The following BLAST results are available for this feature:
BLAST of TCONS_00041438 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NUP541.772e-8955.64Nucleoporin p54 OS=Homo sapiens GN=NUP54 PE=1 SV=2[more]
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