TCONS_00039896-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00039896-protein
Unique NameTCONS_00039896-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length234

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00039896-protein ID=TCONS_00039896-protein|Name=TCONS_00039896-protein|organism=Clytia hemisphaerica|type=polypeptide|length=234bp
MLISGPNMGGKSSYIKQIAIYCILAQIGSYIAASSARVGVLDGIYTRMGA
NDNIAHGKSTFLVEMEEASRILRNSTNKSLVILDELGRGTSTFDGVAIAS
AALKYFLDEVQPFTLFVSHYPSVFKEFENHDACVNHHMSFIEANDVGVVT
DEESGVKKEKVDSIVFLYKLANGVAGKSYGLNVSRLAGISEDIIQNAARK
SSQFQEKMSNLRSFKNAIKFAKTKERYLLNSHEH
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_024148XLOC_024148Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00039896TCONS_00039896Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000432DNA_mismatch_repair_MutS_C
IPR027417P-loop_NTPase
Vocabulary: Biological Process
TermDefinition
GO:0006298mismatch repair
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0030983mismatched DNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006298 mismatch repair
molecular_function GO:0005524 ATP binding
molecular_function GO:0030983 mismatched DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000432DNA mismatch repair protein MutS, C-terminalSMARTSM00534mutATP5coord: 1..202
e-value: 3.4E-94
score: 328.9
IPR000432DNA mismatch repair protein MutS, C-terminalPFAMPF00488MutS_Vcoord: 1..204
e-value: 1.0E-65
score: 221.3
IPR000432DNA mismatch repair protein MutS, C-terminalPROSITEPS00486DNA_MISMATCH_REPAIR_2coord: 79..95
NoneNo IPR availableGENE3D3.40.50.300coord: 1..233
e-value: 8.2E-31
score: 106.5
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 2..206

Blast
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BLAST of TCONS_00039896-protein vs. Swiss-Prot (Human)
Match: MSH3 (DNA mismatch repair protein Msh3 OS=Homo sapiens GN=MSH3 PE=1 SV=4)

HSP 1 Score: 221.09 bits (562), Expect = 3.247e-66
Identity = 104/206 (50.49%), Postives = 152/206 (73.79%), Query Frame = 0 
Query:    1 MLISGPNMGGKSSYIKQIAIYCILAQIGSYIAASSARVGVLDGIYTRMGANDNIAHGKSTFLVEMEEASRILRNSTNKSLVILDELGRGTSTFDGVAIASAALKYFLDEVQPFTLFVSHYPSVFKEFENHDACV-NHHMSFIEANDVGVVTDEESGVKKEKVDSIVFLYKLANGVAGKSYGLNVSRLAGISEDIIQNAARKSSQFQ 205
            M+I+GPNMGGKSSYIKQ+A+  I+AQIGSY+ A  A +G++DGI+TRMGA DNI  G+STF+ E+ + + I+R +T++SLVILDELGRGTST DG+AIA A L+YF+ +V+  TLFV+HYP V +  +N+   V N+HM F+ + D   +   + G  ++  D + FLY++  G+A +SYGLNV++LA +  +I++ AA KS + +
Sbjct:  892 MIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGQSTFMEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHMGFLVSEDESKL---DPGAAEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEILKKAAHKSKELE 1094
The following BLAST results are available for this feature:
BLAST of TCONS_00039896-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MSH33.247e-6650.49DNA mismatch repair protein Msh3 OS=Homo sapiens G... [more]
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