TCONS_00039354-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00039354-protein
Unique NameTCONS_00039354-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length339

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00039354-protein ID=TCONS_00039354-protein|Name=TCONS_00039354-protein|organism=Clytia hemisphaerica|type=polypeptide|length=339bp
MNEAPTQEQIDRSPALQALQKIKYDEENPEACALSHKEDGNYHFQRKEYR
KAITAYTEGLKQKHDDEPLKAVLLTNRAATNFHLGNNRTALNDAVAALKH
KPGHMKAIIRAAIACFDMEKYEECVTWCERGLKVDAKEQKLINYKKKAMH
QKKQKERDERKQNMKQFNDLQRRKKMMDAMKERAVTFYSKDREEELDSNE
HEATLEHLLFKRSPRSGAITLDENNEFHWPLYLLYPEYNQSDFIEDCHED
IRLCDQLNVVFSETPEWDKEKSYTPPNVEVFFEDTKRRQLIRVDPNISLK
TIIADKRYRINGEWPTLMILSKNSDFYAKTFENQKYEDF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_023722XLOC_023722Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00039354TCONS_00039354Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom
IPR013026TPR-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 134..173
NoneNo IPR availableGENE3D1.10.150.160coord: 24..81
e-value: 7.2E-12
score: 44.7
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 105..138
e-value: 8.7
score: 15.3
coord: 71..104
e-value: 9.1
score: 15.2
coord: 33..66
e-value: 0.095
score: 21.8
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 82..177
e-value: 2.0E-10
score: 40.0
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 34..149
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 33..138
score: 11.248

Blast
[Close]
BLAST of TCONS_00039354-protein vs. Swiss-Prot (Human)
Match: TTC4 (Tetratricopeptide repeat protein 4 OS=Homo sapiens GN=TTC4 PE=1 SV=3)

HSP 1 Score: 256.914 bits (655), Expect = 3.359e-83
Identity = 135/328 (41.16%), Postives = 199/328 (60.67%), Query Frame = 0 
Query:    1 MNEAPTQEQIDRSPALQALQKIKYDEE-NPEACALSHKEDGNYHFQRKEYRKAITAYTEGLKQKHDDEPLKAVLLTNRAATNFHLGNNRTALNDAVAALKHKPGHMKAIIRAAIACFDMEKYEECVTWCERGLKVDAKEQKLINYKKKAMHQKKQKERDERKQNMKQFNDLQRRKKMMDAMKERAVTFYSKDREEELDSNEHEATL-EHLLFKRSPRSGAITLDENNEFHWPLYLLYPEYNQSDFIEDCHEDIRLCDQLNVVFSETPEWDKEKSYTPPNVEVFFEDTKRRQLIRVDPNISLKTIIADKRYRINGEWPTLMILSKNSDF 326
            M+ AP++     +P L  LQ I +DEE +PE  A ++K++GN +F+ K+Y+KA+ +YTEGLK+K  D  L AVL TNRAA  ++LGN R+ALND  AA K KP H+KAIIR A+   +++ + E V WC+ GL++DAKE+KL+  + KA   K+ ++RD RK N+K+  +  + + ++ A+K R +       E+E  ++E    L    L   +P    ++LD      WP+  LYPEY QSDFI   HED R  D L V+F ETP WD E+ Y P N+EV+FED  R +L RV    +L  ++  +RY +    P  ++   +S F
Sbjct:   46 MSRAPSEIDPRENPDLACLQSIIFDEERSPEEQAKTYKDEGNDYFKEKDYKKAVISYTEGLKKKCADPDLNAVLYTNRAAAQYYLGNFRSALNDVTAARKLKPCHLKAIIRGALCHLELKHFAEAVNWCDEGLQIDAKEKKLLEMRAKADKLKRIEQRDVRKANLKEKKERNQNEALLQAIKARNIRLSEAACEDEDSASEGLGELFLDGLSTENPHGARLSLDGQGRLSWPVLFLYPEYAQSDFISAFHEDSRFIDHLMVMFGETPSWDLEQKYCPDNLEVYFEDEDRAELYRVPAKSTLLQVLQHQRYFVKALTPAFLVCVGSSPF 373
The following BLAST results are available for this feature:
BLAST of TCONS_00039354-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TTC43.359e-8341.16Tetratricopeptide repeat protein 4 OS=Homo sapiens... [more]
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