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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039354 ID=TCONS_00039354|Name=TCONS_00039354|organism=Clytia hemisphaerica|type=transcript|length=1764bpRun BLAST on NCBI protein sequence of TCONS_00039354-protein >TCONS_00039354-protein ID=TCONS_00039354-protein|Name=TCONS_00039354-protein|organism=Clytia hemisphaerica|type=polypeptide|length=339bp MNEAPTQEQIDRSPALQALQKIKYDEENPEACALSHKEDGNYHFQRKEYRRun BLAST on NCBI transcript from alignment at sc0002082:10034..17937- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00039354 ID=TCONS_00039354|Name=TCONS_00039354|organism=Clytia hemisphaerica|type=transcript|length=7904bp|location=Sequence derived from alignment at sc0002082:10034..17937- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0002082:10034..17937- >TCONS_00039354 ID=TCONS_00039354|Name=TCONS_00039354|organism=Clytia hemisphaerica|type=CDS|length=9180bp|location=Sequence derived from alignment at sc0002082:10034..17937- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00039354 vs. Swiss-Prot (Human)
Match: TTC4 (Tetratricopeptide repeat protein 4 OS=Homo sapiens GN=TTC4 PE=1 SV=3) HSP 1 Score: 245.743 bits (626), Expect = 2.019e-74 Identity = 137/331 (41.39%), Postives = 201/331 (60.73%), Query Frame = 3
Query: 171 PAFMNEAPTQEQIDRSPALQALQKIKYDEE-NPEACALSHKEDGNYHFQRKEYRKAITAYTEGLKQKHDDEPLKAVLLTNRAATNFHLGNNRTALNDAVAALKHKPGHMKAIIRAAIACFDMEKYEECVTWCERGLKVDAKEQKLINYXXXXXXXXXXXXXXXXXXNMKQFNDLQRRKKMMDAMKERAVTFYSKDREEELDSNEHEATL-EHLLFKRSPRSGAITLDENNEFHWPLYLLYPEYNQSDFIEDCHEDIRLCDQLNVVFSETPEWDKEKSYTPPNVEVFFEDTKRRQLIRVDPNISLKTIIADKRYRINGEWPTLMILSKNSDF 1157
P FM+ AP++ +P L LQ I +DEE +PE A ++K++GN +F+ K+Y+KA+ +YTEGLK+K D L AVL TNRAA ++LGN R+ALND AA K KP H+KAIIR A+ +++ + E V WC+ GL++DAKE+KL+ + KA K+ ++RD RK N+K+ + + + ++ A+K R + E+E ++E L L +P ++LD WP+ LYPEY QSDFI HED R D L V+F ETP WD E+ Y P N+EV+FED R +L RV +L ++ +RY + P ++ +S F
Sbjct: 43 PLFMSRAPSEIDPRENPDLACLQSIIFDEERSPEEQAKTYKDEGNDYFKEKDYKKAVISYTEGLKKKCADPDLNAVLYTNRAAAQYYLGNFRSALNDVTAARKLKPCHLKAIIRGALCHLELKHFAEAVNWCDEGLQIDAKEKKLLEMRAKADKLKRIEQRDVRKANLKEKKERNQNEALLQAIKARNIRLSEAACEDEDSASEGLGELFLDGLSTENPHGARLSLDGQGRLSWPVLFLYPEYAQSDFISAFHEDSRFIDHLMVMFGETPSWDLEQKYCPDNLEVYFEDEDRAELYRVPAKSTLLQVLQHQRYFVKALTPAFLVCVGSSPF 373 The following BLAST results are available for this feature:
BLAST of TCONS_00039354 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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