TCONS_00037604-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00037604-protein
Unique Name	TCONS_00037604-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	534

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00037604-protein ID=TCONS_00037604-protein|Name=TCONS_00037604-protein|organism=Clytia hemisphaerica|type=polypeptide|length=534bp
MLNSVYAAINQRTLAIADRNLATYGLNGQLPSDTDDEDYIPSGEPSAKTN
KRKRKMTRKVISTSEDEDGDSIESDHSEEKEEKPKAKRKKKKLTPGKRKK
ANAKIKNADDDEKPSTSNSKKKKGDVKKKSTSSATKKTKAKATNNKPDED
STSTRKKSNRSKLLFGADRGSDDSEDEDYVPEGGRPSSKPTVKKKSNRIN
KSDTSIQNKTFNNGGTSLEWAELPIEILSMIFRFITATESKGVRYILRCS
QVCQHWRNVVNNEASWFDIDLSFVGPSHKERKITRILSKICPIQLVCVRS
LSLSGWCELTDEGLDHVSENCTKIEKLDLSSCQKSVAKLTSSSLLNIAEN
CTELQKLNVSNLRVNSYNQIWSKFLQIRGAGLISMNFSNNIPFSNTCFKL
ITDNCPLLKILDCSNTGLRSLSLQEFQTKCPLLEELYLANVNIVVRRHNN
ELKTCPGFDHLSLVSFASQNFNCWVTDEVLNGFLKSAISLKTLDIRGAKS
VYELDMDIAATSLERLYISDVPLNEEITEAICER

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_022359	XLOC_022359	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00037604	TCONS_00037604	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001810	F-box_dom
IPR032675	L_dom-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 223..269 e-value: 2.2E-5 score: 33.9
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 220..270 e-value: 5.9E-9 score: 35.6
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 217..269 score: 10.531
IPR001810	F-box domain	SUPERFAMILY	81383	F-box domain	coord: 220..278
IPR032675	Leucine-rich repeat domain, L domain-like	GENE3D	3.80.10.10		coord: 459..533 e-value: 0.0026 score: 16.2 coord: 213..458 e-value: 1.1E-25 score: 89.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..210
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 285..444 coord: 477..528

Blast

[Close]

BLAST of TCONS_00037604-protein vs. Swiss-Prot (Human)
Match: FBXL6 (F-box/LRR-repeat protein 6 OS=Homo sapiens GN=FBXL6 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.926e-24
Identity = 90/365 (24.66%), Postives = 164/365 (44.93%), Query Frame = 0

Query:  181 PEGGRPSSKPTVKKKSNRINKSDTSIQNKTFNNGGTSLEWAE-LPIEILSMIFRFITATESKGVRYILRCSQVCQHWRNVVNNEASWFDIDLS--FVGPSHK-----ERKITRILSKICPIQLVCVRSLSLSGWCELTDEGLDHVSENCTKIEKLDLSSCQKSVAKLTSSSLLNIAENCTELQKLNVSNLRVNSYNQIWSKFLQIRGAGLISMNFSNNIPFSNTCFKLITDNCPLLKILDCSNTGLR------SLSLQEFQTKCPLLEELYLANVNIVVRRHNNELKTCPGFDHLSLVSFASQNFNCWVTDEVLNGFLKSAISLKTLDIRGAKSVYELDM-DIAATSLERLYISDVPLNEEITEA 530
            P G   ++KP    +S        +         G    W + +P+EIL  IF  + A +   + ++ R ++VC+ W+   +  A W  + LS   VG   K     E+K+   L  + P +   ++ L+L  W       L  V E C ++  L LS C      +T+ +L+ +A+ C +L  L++ +  V S   +   FL+  G+ +  +  + +   +     L+   CP L++L+ S TG+        L ++  Q  CP L+ L L N+  + +     +   PGF  L  +  AS   N +V++EVL   L  + +L+ LD+RG   +    + D+    LE+L++     ++ +T A
Sbjct:   72 PRGPSAAAKPKAGLRSEAAAAPAPAPAPTPTPEEGPDAGWGDRIPLEILVQIFGLLVAADGP-MPFLGRAARVCRRWQEAASQPALWHTVTLSSPLVGRPAKGGVKAEKKLLASLEWLMPNRFSQLQRLTLIHWKSQVHPVLKLVGECCPRLTFLKLSGCH----GVTADALVMLAKACCQLHSLDLQHSMVESTAVV--SFLEEAGSRMRKLWLTYSSQTTAILGALLGSCCPQLQVLEVS-TGINRNSIPLQLPVEALQKGCPQLQVLRLLNLMWLPKPPGRGVAPGPGFPSLEELCLASSTCN-FVSNEVLGRLLHGSPNLRLLDLRGCARITPAGLQDLPCRELEQLHLGLYGTSDRLTLA 427

The following BLAST results are available for this feature:

BLAST of TCONS_00037604-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00037604-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
FBXL6	5.926e-24	24.66	F-box/LRR-repeat protein 6 OS=Homo sapiens GN=FBXL...	[more]

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TCONS_00037604-protein (polypeptide) - C. hemisphaerica