TCONS_00036365-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00036365-protein
Unique NameTCONS_00036365-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length198

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00036365-protein ID=TCONS_00036365-protein|Name=TCONS_00036365-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
NILISPCTFSFITFNSPSPTMLFLVSKTTICVRSISSPLKMHYFSYTFIS
NYNKLINKYGPYQTCTKTPFATLLKSTNKTKQKYEKSKKSSRKRKNKEKK
RRMKQSLIKTVGEIRFYQRTTFNLIPKLSFCRLIKELLCSAGAEHLRIQT
IALEALQEATEDFIVRYFQDSNFCALHAGRVTLMVKDMKLLNILKFEP
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_021410XLOC_021410Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00036365TCONS_00036365Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000164Histone_H3/CENP-A
IPR007125Histone_H2A/H2B/H3
IPR009072Histone-fold
Vocabulary: Cellular Component
TermDefinition
GO:0000786nucleosome
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0000786 nucleosome
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 81..101
NoneNo IPR availableGENE3D1.10.20.10coord: 64..197
e-value: 3.6E-32
score: 110.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..104
IPR000164Histone H3/CENP-ASMARTSM00428h35coord: 93..197
e-value: 6.3E-23
score: 92.2
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 76..190
e-value: 1.0E-23
score: 84.0
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 78..191

Blast
[Close]
BLAST of TCONS_00036365-protein vs. Swiss-Prot (Human)
Match: H33 (Histone H3.3 OS=Homo sapiens GN=H3F3A PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 3.713e-19
Identity = 40/85 (47.06%), Postives = 59/85 (69.41%), Query Frame = 0 
Query:  113 EIRFYQRTTFNLIPKLSFCRLIKELLCSAGAEHLRIQTIALEALQEATEDFIVRYFQDSNFCALHAGRVTLMVKDMKLLNILKFE 197
            EIR YQ++T  LI KL F RL++E+      + LR Q+ A+ ALQEA+E ++V  F+D+N CA+HA RVT+M KD++L   ++ E
Sbjct:   51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTD-LRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134
The following BLAST results are available for this feature:
BLAST of TCONS_00036365-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
H333.713e-1947.06Histone H3.3 OS=Homo sapiens GN=H3F3A PE=1 SV=2[more]
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