TCONS_00036365 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036365
Unique NameTCONS_00036365
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length998

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036365 ID=TCONS_00036365|Name=TCONS_00036365|organism=Clytia hemisphaerica|type=transcript|length=998bp
AAATATTCTAATTTCTCCATGTACCTTTTCGTTCATCACGTTTAATAGTC
CTAGCCCGACAATGTTGTTCTTAGTATCAAAGACAACAATTTGTGTTCGT
TCCATTTCCTCTCCTTTAAAaatgcattatttttcataCACTTTCATTAG
CAATTACAACAAATTGATTAATAAATATGGTCCGTATCAAACTTGCACCA
AAACACCATTTGCAACGCTGCTCAAATCTaccaacaaaaccaaacaaaaa
tacgagaaatcaaagaaatcatcgaggaagagaaaaaataaagaaaagaa
aagGAGAATGAAGCAATCGTTAATTAAAACTGTCGGAGAAATTCGGTTTT
ACCAACGGACCACATTTAATCTTATACCTAAGTTGAGTTTTTGTCGTTTA
ATTAAAGAACTTTTATGCAGTGCTGGTGCAGAACATCTCCGCATACAAAC
AATAGCACTGGAGGCCCTCCAAGAAGCAACAGAAGATTTTATTGTCAGAT
ATTTTCAAGACTCAAACTTTTGCGCTTTACATGCTGGTCGTGTTACGCTA
ATGGTTAAAGATATGAAATTATTGAATATCTTGAAATTTGAGCCGTAGTC
AAGGATTGCCTGTTTTTTCCCGTTCTGAACTTTTTagatttattttcata
ttttgttattttcttatGATCATTAACGATTTTAACTGCGTACATCGTGC
TTTTATCGTTAGCTTAcgttgtaattttttttgttcttgaGAAGGTTTTT
AATTAAGGGTCGTTTTGGAGGTTTTGTTACTGGTTGGAATGGGTAAGCAC
ACACCCACTCTCAGATACGGGCAGATCATTGTCAATTTTCTCCATCAACT
TCGTCACCAAATTTTGCTTCAAATTATTGATTATGAAATTAACTTAAGac
tcgttttctttactcaaactagtgACTACGATTCAAACATTTTACATGGA
AATGAAATTATAGTCTACAATTTTTAATACAATAAAGCTTTTAGCCAG
Run BLAST on NCBI

protein sequence of TCONS_00036365-protein

>TCONS_00036365-protein ID=TCONS_00036365-protein|Name=TCONS_00036365-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
NILISPCTFSFITFNSPSPTMLFLVSKTTICVRSISSPLKMHYFSYTFIS
NYNKLINKYGPYQTCTKTPFATLLKSTNKTKQKYEKSKKSSRKRKNKEKK
RRMKQSLIKTVGEIRFYQRTTFNLIPKLSFCRLIKELLCSAGAEHLRIQT
IALEALQEATEDFIVRYFQDSNFCALHAGRVTLMVKDMKLLNILKFEP
Run BLAST on NCBI

transcript from alignment at sc0001449:57694..59175+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036365 ID=TCONS_00036365|Name=TCONS_00036365|organism=Clytia hemisphaerica|type=transcript|length=1482bp|location=Sequence derived from alignment at sc0001449:57694..59175+ (Clytia hemisphaerica)
AAATATTCTAATTTCTCCATGTACCTTTTCGTTCATCACGTTTAATAGTC
CTAGCCCGACAATGTTGTTCTTAGTATCAAAGACAACAATTTGTGTTCGT
TCCATTTCCTCTCCTTTAAAaatgcattatttttcataCACTTTCATTAG
CAATTACAACAAATTGATTAATAAATATGGTCCGTATCAAACTTGCACCA
AAACACCATTTGCAACGCTGCTCAAATCTaccaacaaaaccaaacaaaaa
tacgagaaatcaaagaaatcatcgaggaagagaaaaaataaagaaaagaa
aaggtaaCATTATTTTTCTATTCTCTTGGAAACCAATACATATTCTTAAA
ATCACAGCCGATAATTATAAAAATCTTAACTACCAGACCGACGAATTGGT
GACAGAACTAATCTTGAAGATAAAGATTTATAAGTTTACACTTTGATACC
TCTTACAACTCTTCCTTCGTATAATTTATCttctaaagaaaataaaaggG
GATTCCTCCACATTCAAATCCATGttttatacacccccttctcacatatc
cggtaggatttttcagccTCATAAAATTCAGTGAggaatgggaaaaatag
taaagttttttgcagtgaggattggtttatttgattattttcactgagga
caaaaattggaggataatttttcaccgggacgatatttttgccaactttt
ccagtggatctgtgagaagggggtgtttttatcTCTTGGGTTCTACGTTA
TTTACTTGTGTACTTTTAACTCGTTTTATTCTTTAAGGAGAATGAAGCAA
TCGTTAATTAAAACTGTCGGAGAAATTCGGTTTTACCAACGGACCACATT
TAATCTTATACCTAAGTTGAGTTTTTGTCGTTTAATTAAAGAACTTTTAT
GCAGTGCTGGTGCAGAACATCTCCGCATACAAACAATAGCACTGGAGGCC
CTCCAAGAAGCAACAGAAGATTTTATTGTCAGATATTTTCAAGACTCAAA
CTTTTGCGCTTTACATGCTGGTCGTGTTACGCTAATGGTTAAAGATATGA
AATTATTGAATATCTTGAAATTTGAGCCGTAGTCAAGGATTGCCTGTTTT
TTCCCGTTCTGAACTTTTTagatttattttcatattttgttattttctta
tGATCATTAACGATTTTAACTGCGTACATCGTGCTTTTATCGTTAGCTTA
cgttgtaattttttttgttcttgaGAAGGTTTTTAATTAAGGGTCGTTTT
GGAGGTTTTGTTACTGGTTGGAATGGGTAAGCACACACCCACTCTCAGAT
ACGGGCAGATCATTGTCAATTTTCTCCATCAACTTCGTCACCAAATTTTG
CTTCAAATTATTGATTATGAAATTAACTTAAGactcgttttctttactca
aactagtgACTACGATTCAAACATTTTACATGGAAATGAAATTATAGTCT
ACAATTTTTAATACAATAAAGCTTTTAGCCAG

Coding sequence (CDS) from alignment at sc0001449:57694..59175+

>TCONS_00036365 ID=TCONS_00036365|Name=TCONS_00036365|organism=Clytia hemisphaerica|type=CDS|length=1194bp|location=Sequence derived from alignment at sc0001449:57694..59175+ (Clytia hemisphaerica)
AATATTCTAATTTCTCCATGTACCTTTTCGTTCATCACGTTTAATAGTCC
TAGCCCGACAATGTTGTTCTTAGTATCAAAGACAACAATTTGTGTTCGTT
CCATTTCCTCTCCTTTAAAaatgcattatttttcataCACTTTCATTAGC
AATTACAACAAATTGATTAATAAATATGGTCCGTATCAAACTTGCACCAA
AACACCATTTGCAACGCTGCTCAAATCTaccaacaaaaccaaacaaaaat
acgagaaatcaaagaaatcatcgaggaagagaaaaaataaagaaaagaaa
agGAGAATGAAGCAATCGTTAATTAAAACTGTCGGAGAAATTCGGTTTTA
CCAACGGACCACATTTAATCTTATACCTAAGTTGAGTTTTTGTCGTTTAA
TTAAAGAACTTTTATGCAGTGCTGGTGCAGAACATCTCCGCATACAAACA
ATAGCACTGGAGGCCCTCCAAGAAGCAACAGAAGATTTTATTGTCAGATA
TTTTCAAGACTCAAACTTTTGCGCTTTACATGCTGGTCGTGTTACGCTAA
TGGTTAAAGATATGAAATTATTGAATATCTTGAAATTTGAGCCGTAGAAT
ATTCTAATTTCTCCATGTACCTTTTCGTTCATCACGTTTAATAGTCCTAG
CCCGACAATGTTGTTCTTAGTATCAAAGACAACAATTTGTGTTCGTTCCA
TTTCCTCTCCTTTAAAaatgcattatttttcataCACTTTCATTAGCAAT
TACAACAAATTGATTAATAAATATGGTCCGTATCAAACTTGCACCAAAAC
ACCATTTGCAACGCTGCTCAAATCTaccaacaaaaccaaacaaaaatacg
agaaatcaaagaaatcatcgaggaagagaaaaaataaagaaaagaaaagG
AGAATGAAGCAATCGTTAATTAAAACTGTCGGAGAAATTCGGTTTTACCA
ACGGACCACATTTAATCTTATACCTAAGTTGAGTTTTTGTCGTTTAATTA
AAGAACTTTTATGCAGTGCTGGTGCAGAACATCTCCGCATACAAACAATA
GCACTGGAGGCCCTCCAAGAAGCAACAGAAGATTTTATTGTCAGATATTT
TCAAGACTCAAACTTTTGCGCTTTACATGCTGGTCGTGTTACGCTAATGG
TTAAAGATATGAAATTATTGAATATCTTGAAATTTGAGCCGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021410XLOC_021410Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036365-proteinTCONS_00036365-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036365-exon-sc0001449-1491911889:57694..57996TCONS_00036365-exon-sc0001449-1491911889:57694..57996Clytia hemisphaericaexon
TCONS_00036365-exon-sc0001449-1510915933:57694..57996TCONS_00036365-exon-sc0001449-1510915933:57694..57996Clytia hemisphaericaexon
TCONS_00036365-exon-sc0001449-1575043694:57694..57996TCONS_00036365-exon-sc0001449-1575043694:57694..57996Clytia hemisphaericaexon
TCONS_00036365-exon-sc0001449-1491911889:58481..59175TCONS_00036365-exon-sc0001449-1491911889:58481..59175Clytia hemisphaericaexon
TCONS_00036365-exon-sc0001449-1510915933:58481..59175TCONS_00036365-exon-sc0001449-1510915933:58481..59175Clytia hemisphaericaexon
TCONS_00036365-exon-sc0001449-1575043694:58481..59175TCONS_00036365-exon-sc0001449-1575043694:58481..59175Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001449supercontigsc0001449:57694..59175 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.303229	0.26309	0	0.149429	0.496548	0.199613	1.09513	0.695514	1.183	1.47244	0.92429	0.898402	0.905239	1.33544	0.731159	1.47942	0.67878	1.07903	0.560228	0.40696	1.60858	1.58113	1.09733	0.948264	2.38146	2.25354	1.5505	1.50541	0.969603	1.71451
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000164Histone_H3/CENP-A
IPR007125Histone_H2A/H2B/H3
IPR009072Histone-fold
Vocabulary: Cellular Component
TermDefinition
GO:0000786nucleosome
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0000786 nucleosome
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity
Blast
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BLAST of TCONS_00036365 vs. Swiss-Prot (Human)
Match: H33 (Histone H3.3 OS=Homo sapiens GN=H3F3A PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.124e-17
Identity = 40/85 (47.06%), Postives = 59/85 (69.41%), Query Frame = 2 
Query:  338 EIRFYQRTTFNLIPKLSFCRLIKELLCSAGAEHLRIQTIALEALQEATEDFIVRYFQDSNFCALHAGRVTLMVKDMKLLNILKFE 592
            EIR YQ++T  LI KL F RL++E+      + LR Q+ A+ ALQEA+E ++V  F+D+N CA+HA RVT+M KD++L   ++ E
Sbjct:   51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTD-LRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134
The following BLAST results are available for this feature:
BLAST of TCONS_00036365 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
H331.124e-1747.06Histone H3.3 OS=Homo sapiens GN=H3F3A PE=1 SV=2[more]
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