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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036365 ID=TCONS_00036365|Name=TCONS_00036365|organism=Clytia hemisphaerica|type=transcript|length=998bp
AAATATTCTAATTTCTCCATGTACCTTTTCGTTCATCACGTTTAATAGTC
CTAGCCCGACAATGTTGTTCTTAGTATCAAAGACAACAATTTGTGTTCGT
TCCATTTCCTCTCCTTTAAAaatgcattatttttcataCACTTTCATTAG
CAATTACAACAAATTGATTAATAAATATGGTCCGTATCAAACTTGCACCA
AAACACCATTTGCAACGCTGCTCAAATCTaccaacaaaaccaaacaaaaa
tacgagaaatcaaagaaatcatcgaggaagagaaaaaataaagaaaagaa
aagGAGAATGAAGCAATCGTTAATTAAAACTGTCGGAGAAATTCGGTTTT
ACCAACGGACCACATTTAATCTTATACCTAAGTTGAGTTTTTGTCGTTTA
ATTAAAGAACTTTTATGCAGTGCTGGTGCAGAACATCTCCGCATACAAAC
AATAGCACTGGAGGCCCTCCAAGAAGCAACAGAAGATTTTATTGTCAGAT
ATTTTCAAGACTCAAACTTTTGCGCTTTACATGCTGGTCGTGTTACGCTA
ATGGTTAAAGATATGAAATTATTGAATATCTTGAAATTTGAGCCGTAGTC
AAGGATTGCCTGTTTTTTCCCGTTCTGAACTTTTTagatttattttcata
ttttgttattttcttatGATCATTAACGATTTTAACTGCGTACATCGTGC
TTTTATCGTTAGCTTAcgttgtaattttttttgttcttgaGAAGGTTTTT
AATTAAGGGTCGTTTTGGAGGTTTTGTTACTGGTTGGAATGGGTAAGCAC
ACACCCACTCTCAGATACGGGCAGATCATTGTCAATTTTCTCCATCAACT
TCGTCACCAAATTTTGCTTCAAATTATTGATTATGAAATTAACTTAAGac
tcgttttctttactcaaactagtgACTACGATTCAAACATTTTACATGGA
AATGAAATTATAGTCTACAATTTTTAATACAATAAAGCTTTTAGCCAG Run BLAST on NCBI protein sequence of TCONS_00036365-protein >TCONS_00036365-protein ID=TCONS_00036365-protein|Name=TCONS_00036365-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
NILISPCTFSFITFNSPSPTMLFLVSKTTICVRSISSPLKMHYFSYTFIS
NYNKLINKYGPYQTCTKTPFATLLKSTNKTKQKYEKSKKSSRKRKNKEKK
RRMKQSLIKTVGEIRFYQRTTFNLIPKLSFCRLIKELLCSAGAEHLRIQT
IALEALQEATEDFIVRYFQDSNFCALHAGRVTLMVKDMKLLNILKFEP Run BLAST on NCBI transcript from alignment at sc0001449:57694..59175+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036365 ID=TCONS_00036365|Name=TCONS_00036365|organism=Clytia hemisphaerica|type=transcript|length=1482bp|location=Sequence derived from alignment at sc0001449:57694..59175+ (Clytia hemisphaerica)
AAATATTCTAATTTCTCCATGTACCTTTTCGTTCATCACGTTTAATAGTC
CTAGCCCGACAATGTTGTTCTTAGTATCAAAGACAACAATTTGTGTTCGT
TCCATTTCCTCTCCTTTAAAaatgcattatttttcataCACTTTCATTAG
CAATTACAACAAATTGATTAATAAATATGGTCCGTATCAAACTTGCACCA
AAACACCATTTGCAACGCTGCTCAAATCTaccaacaaaaccaaacaaaaa
tacgagaaatcaaagaaatcatcgaggaagagaaaaaataaagaaaagaa
aaggtaaCATTATTTTTCTATTCTCTTGGAAACCAATACATATTCTTAAA
ATCACAGCCGATAATTATAAAAATCTTAACTACCAGACCGACGAATTGGT
GACAGAACTAATCTTGAAGATAAAGATTTATAAGTTTACACTTTGATACC
TCTTACAACTCTTCCTTCGTATAATTTATCttctaaagaaaataaaaggG
GATTCCTCCACATTCAAATCCATGttttatacacccccttctcacatatc
cggtaggatttttcagccTCATAAAATTCAGTGAggaatgggaaaaatag
taaagttttttgcagtgaggattggtttatttgattattttcactgagga
caaaaattggaggataatttttcaccgggacgatatttttgccaactttt
ccagtggatctgtgagaagggggtgtttttatcTCTTGGGTTCTACGTTA
TTTACTTGTGTACTTTTAACTCGTTTTATTCTTTAAGGAGAATGAAGCAA
TCGTTAATTAAAACTGTCGGAGAAATTCGGTTTTACCAACGGACCACATT
TAATCTTATACCTAAGTTGAGTTTTTGTCGTTTAATTAAAGAACTTTTAT
GCAGTGCTGGTGCAGAACATCTCCGCATACAAACAATAGCACTGGAGGCC
CTCCAAGAAGCAACAGAAGATTTTATTGTCAGATATTTTCAAGACTCAAA
CTTTTGCGCTTTACATGCTGGTCGTGTTACGCTAATGGTTAAAGATATGA
AATTATTGAATATCTTGAAATTTGAGCCGTAGTCAAGGATTGCCTGTTTT
TTCCCGTTCTGAACTTTTTagatttattttcatattttgttattttctta
tGATCATTAACGATTTTAACTGCGTACATCGTGCTTTTATCGTTAGCTTA
cgttgtaattttttttgttcttgaGAAGGTTTTTAATTAAGGGTCGTTTT
GGAGGTTTTGTTACTGGTTGGAATGGGTAAGCACACACCCACTCTCAGAT
ACGGGCAGATCATTGTCAATTTTCTCCATCAACTTCGTCACCAAATTTTG
CTTCAAATTATTGATTATGAAATTAACTTAAGactcgttttctttactca
aactagtgACTACGATTCAAACATTTTACATGGAAATGAAATTATAGTCT
ACAATTTTTAATACAATAAAGCTTTTAGCCAG Coding sequence (CDS) from alignment at sc0001449:57694..59175+ >TCONS_00036365 ID=TCONS_00036365|Name=TCONS_00036365|organism=Clytia hemisphaerica|type=CDS|length=1194bp|location=Sequence derived from alignment at sc0001449:57694..59175+ (Clytia hemisphaerica)
AATATTCTAATTTCTCCATGTACCTTTTCGTTCATCACGTTTAATAGTCC
TAGCCCGACAATGTTGTTCTTAGTATCAAAGACAACAATTTGTGTTCGTT
CCATTTCCTCTCCTTTAAAaatgcattatttttcataCACTTTCATTAGC
AATTACAACAAATTGATTAATAAATATGGTCCGTATCAAACTTGCACCAA
AACACCATTTGCAACGCTGCTCAAATCTaccaacaaaaccaaacaaaaat
acgagaaatcaaagaaatcatcgaggaagagaaaaaataaagaaaagaaa
agGAGAATGAAGCAATCGTTAATTAAAACTGTCGGAGAAATTCGGTTTTA
CCAACGGACCACATTTAATCTTATACCTAAGTTGAGTTTTTGTCGTTTAA
TTAAAGAACTTTTATGCAGTGCTGGTGCAGAACATCTCCGCATACAAACA
ATAGCACTGGAGGCCCTCCAAGAAGCAACAGAAGATTTTATTGTCAGATA
TTTTCAAGACTCAAACTTTTGCGCTTTACATGCTGGTCGTGTTACGCTAA
TGGTTAAAGATATGAAATTATTGAATATCTTGAAATTTGAGCCGTAGAAT
ATTCTAATTTCTCCATGTACCTTTTCGTTCATCACGTTTAATAGTCCTAG
CCCGACAATGTTGTTCTTAGTATCAAAGACAACAATTTGTGTTCGTTCCA
TTTCCTCTCCTTTAAAaatgcattatttttcataCACTTTCATTAGCAAT
TACAACAAATTGATTAATAAATATGGTCCGTATCAAACTTGCACCAAAAC
ACCATTTGCAACGCTGCTCAAATCTaccaacaaaaccaaacaaaaatacg
agaaatcaaagaaatcatcgaggaagagaaaaaataaagaaaagaaaagG
AGAATGAAGCAATCGTTAATTAAAACTGTCGGAGAAATTCGGTTTTACCA
ACGGACCACATTTAATCTTATACCTAAGTTGAGTTTTTGTCGTTTAATTA
AAGAACTTTTATGCAGTGCTGGTGCAGAACATCTCCGCATACAAACAATA
GCACTGGAGGCCCTCCAAGAAGCAACAGAAGATTTTATTGTCAGATATTT
TCAAGACTCAAACTTTTGCGCTTTACATGCTGGTCGTGTTACGCTAATGG
TTAAAGATATGAAATTATTGAATATCTTGAAATTTGAGCCGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036365-exon-sc0001449-1491911889:57694..57996 | TCONS_00036365-exon-sc0001449-1491911889:57694..57996 | Clytia hemisphaerica | exon |
| TCONS_00036365-exon-sc0001449-1510915933:57694..57996 | TCONS_00036365-exon-sc0001449-1510915933:57694..57996 | Clytia hemisphaerica | exon |
| TCONS_00036365-exon-sc0001449-1575043694:57694..57996 | TCONS_00036365-exon-sc0001449-1575043694:57694..57996 | Clytia hemisphaerica | exon |
| TCONS_00036365-exon-sc0001449-1491911889:58481..59175 | TCONS_00036365-exon-sc0001449-1491911889:58481..59175 | Clytia hemisphaerica | exon |
| TCONS_00036365-exon-sc0001449-1510915933:58481..59175 | TCONS_00036365-exon-sc0001449-1510915933:58481..59175 | Clytia hemisphaerica | exon |
| TCONS_00036365-exon-sc0001449-1575043694:58481..59175 | TCONS_00036365-exon-sc0001449-1575043694:58481..59175 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001449 | supercontig | sc0001449:57694..59175 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0000786 | nucleosome |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0046982 | protein heterodimerization activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0000786 |
nucleosome |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0046982 |
protein heterodimerization activity |
Blast
BLAST of TCONS_00036365 vs. Swiss-Prot (Human)
Match: H33 (Histone H3.3 OS=Homo sapiens GN=H3F3A PE=1 SV=2) HSP 1 Score: 78.5666 bits (192), Expect = 1.124e-17 Identity = 40/85 (47.06%), Postives = 59/85 (69.41%), Query Frame = 2
Query: 338 EIRFYQRTTFNLIPKLSFCRLIKELLCSAGAEHLRIQTIALEALQEATEDFIVRYFQDSNFCALHAGRVTLMVKDMKLLNILKFE 592
EIR YQ++T LI KL F RL++E+ + LR Q+ A+ ALQEA+E ++V F+D+N CA+HA RVT+M KD++L ++ E
Sbjct: 51 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTD-LRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134
The following BLAST results are available for this feature:
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