TCONS_00036246-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00036246-protein
Unique NameTCONS_00036246-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length235

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00036246-protein ID=TCONS_00036246-protein|Name=TCONS_00036246-protein|organism=Clytia hemisphaerica|type=polypeptide|length=235bp
MPVQTVVVSPITGLLEKHAQEEEDEEQNEIKEEKSKKPERSYSVLSIISN
GANICKICHSETEKDDELITPCYCSGSLLYVHQGCVQKWIKATDAKTCEL
CNYNYQVNSTVKPIIEWKTLALTHSERRKILCSVAFHIVAVTCIIWSLWV
LIDRTVEEVKDGNLKWPFWTKLIVVAIGFFGGVVFMYVQCKVYVHLFMRL
KAFNRVIYVKSVPEDERQQHKVDLVEGNNQLESKL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_021318XLOC_021318Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00036246TCONS_00036246Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011016Znf_RING-CH
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 16..36
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..37
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 52..106
IPR011016Zinc finger, RING-CH-typeSMARTSM00744ringv_2coord: 54..102
e-value: 9.5E-19
score: 78.3
IPR011016Zinc finger, RING-CH-typePFAMPF12906RINGvcoord: 55..101
e-value: 1.5E-14
score: 53.7
IPR011016Zinc finger, RING-CH-typePROSITEPS51292ZF_RING_CHcoord: 47..108
score: 22.992
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 49..108
e-value: 2.1E-19
score: 68.7

Blast
[Close]
BLAST of TCONS_00036246-protein vs. Swiss-Prot (Human)
Match: MARH8 (E3 ubiquitin-protein ligase MARCH8 OS=Homo sapiens GN=MARCH8 PE=1 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 1.247e-79
Identity = 107/193 (55.44%), Postives = 147/193 (76.17%), Query Frame = 0 
Query:   42 YSVLSIISNGANICKICHSETEKDDELITPCYCSGSLLYVHQGCVQKWIKATDAKTCELCNYNYQVNSTVKPIIEWKTLALTHSERRKILCSVAFHIVAVTCIIWSLWVLIDRTVEEVKDGN----LKWPFWTKLIVVAIGFFGGVVFMYVQCKVYVHLFMRLKAFNRVIYVKSVPEDERQQ--HKVDLVEGN 228
            +S  SI  +  +IC+ICH E + +  LITPC+C+GSL +VHQ C+Q+WIK++D + CELC Y + + + +KP+ +W+ L +T SERRKI+CSV FH++A+TC++WSL+VLIDRT EE+K G     L+WPFWTKL+VVAIGF GG++FMYVQCKVYV L+ RLKA+NRVIYV++ PE  ++    K  L E N
Sbjct:   67 FSRTSITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLKPLRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRTAEEIKQGQATGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLWKRLKAYNRVIYVQNCPETSKKNIFEKSPLTEPN 259
The following BLAST results are available for this feature:
BLAST of TCONS_00036246-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MARH81.247e-7955.44E3 ubiquitin-protein ligase MARCH8 OS=Homo sapiens... [more]
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