TCONS_00035516-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00035516-protein
Unique NameTCONS_00035516-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length292

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00035516-protein ID=TCONS_00035516-protein|Name=TCONS_00035516-protein|organism=Clytia hemisphaerica|type=polypeptide|length=292bp
TYQRQKDHKKALSGPRANISATTRKFVGEGRRGENHVAKNKFVLKLKIGF
MIFNRTRSFFSFIKQIQTTQLKQFYPSFHHQYYRTSILNMADSGEKLSKN
ELKRRLKAEQKAKEKAEKLAERQKTEAAKPTKQKKDAEGGAVEDEEILDP
NQYYKIRQQSVANYKKKGENPYPHKFNVDISLTEFIEKYNNVEPGTWHDD
RVSVAGRIHAKRLSGPKLIFYDLRGEGVKIQIMADQRSSEQDFGYIHGKI
RRGDIVGVKGRPGKTKKGELSIQPSEIELLSPCLHMLPHLHF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_020773XLOC_020773Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00035516TCONS_00035516Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004365NA-bd_OB_tRNA
IPR012340NA-bd_OB-fold
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 99..126
NoneNo IPR availableGENE3D2.40.50.140coord: 150..289
e-value: 2.9E-40
score: 136.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 107..142
NoneNo IPR availableCDDcd04322LysRS_Ncoord: 201..291
e-value: 2.03845E-39
score: 134.527
IPR004365OB-fold nucleic acid binding domain, AA-tRNA synthetase-typePFAMPF01336tRNA_anti-codoncoord: 202..280
e-value: 5.0E-15
score: 55.1
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 148..288

Blast
[Close]
BLAST of TCONS_00035516-protein vs. Swiss-Prot (Human)
Match: SYK (Lysine--tRNA ligase OS=Homo sapiens GN=KARS PE=1 SV=3)

HSP 1 Score: 242.276 bits (617), Expect = 7.239e-76
Identity = 127/206 (61.65%), Postives = 157/206 (76.21%), Query Frame = 0 
Query:   93 SGEKLSKNELKRRLKAEQKAKEKAEK---LAERQKTEAAKPTKQKKDAEGGAVEDEEILDPNQYYKIRQQSVANYKKKGENPYPHKFNVDISLTEFIEKYNNVEPGT-WHDDRVSVAGRIHAKRLSGPKLIFYDLRGEGVKIQIMADQRS--SEQDFGYIHGKIRRGDIVGVKGRPGKTKKGELSIQPSEIELLSPCLHMLPHLHF 292
            S  KLSKNELKRRLKAE+K  EK  K   L+E+Q ++A          + G   +EE +DPNQYYKIR Q++   K  GE+PYPHKF+VDISLT+FI+KY++++PG    D  + VAGRIHAKR SG KLIFYDLRGEGVK+Q+MA+ R+  SE++F +I+ K+RRGDI+GV+G PGKTKKGELSI P EI LLSPCLHMLPHLHF
Sbjct:   14 SEPKLSKNELKRRLKAEKKVAEKEAKQKELSEKQLSQATA-AATNHTTDNGVGPEEESVDPNQYYKIRSQAIHQLKVNGEDPYPHKFHVDISLTDFIQKYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHF 218
The following BLAST results are available for this feature:
BLAST of TCONS_00035516-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SYK7.239e-7661.65Lysine--tRNA ligase OS=Homo sapiens GN=KARS PE=1 S... [more]
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