TCONS_00035516 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035516
Unique NameTCONS_00035516
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length880

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035516 ID=TCONS_00035516|Name=TCONS_00035516|organism=Clytia hemisphaerica|type=transcript|length=880bp
ccacttatcagcgccaaaaagaccataaaaaagctctaagtggaccccgg
gctaacaTCAGCGCGACCACGCGTAAATTTGTTGGGGAAGGAAGGAGAGG
AGAAAACCACGTAgcgaaaaacaaatttgttttgaaattgaagattGGTT
TTATGATATTCAATAGAACTcgatcatttttttcttttatcaaacaaata
caaacgACTCAACTCAAACAATTTTACCCATCTTTTCATCATCAATATTA
TAGAACATCAATTCTCAACATGGCTGACAGCGGTGAAAAACTCAGCAAAA
ATGAATTAAAGAGAAGGCTGAAAGCAGaacaaaaagcaaaagaaaaagct
gaaaaattggCTGAAAGACAAAAGACAGAAGCTGCCAAACCAACAAAGCA
AAAGAAAGATGCTGAGGGTGGAGCTGTCGAAGATGAAGAAATCTTAGACC
CAAATCAATATTATAAGATCCGTCAACAATCTGTCGCTAATTACAAAAAG
AAGGGTGAAAACCCCTACCCTCATAAGTTTAATGTGGACATCTCTTTGAC
GGAGTTCATTGAAAAATACAATAATGTTGAACCAGGAACATGGCATGACG
ATCGTGTATCAGTAGCAGGTCGAATTCATGCAAAAAGATTATCTGGACCT
AAATTGATCTTTTATGACTTGAGAGGGGAAGGtgtcaaaattcaaattat
gGCTGACCAAAGATCTTCAGAACAAGATTTTGGATACATCCATGGCAAGA
TCAGACGTGGTGACATCGTTGGTGTCAAAGGACGACCAGGTAAAACAAAG
AAAGGAGAATTGAGTATCCAGCCATCAGAAATTGAACTTTTATCGCCATG
TTTGCATATGTTACCACATTTACATTTCGG
Run BLAST on NCBI

protein sequence of TCONS_00035516-protein

>TCONS_00035516-protein ID=TCONS_00035516-protein|Name=TCONS_00035516-protein|organism=Clytia hemisphaerica|type=polypeptide|length=292bp
TYQRQKDHKKALSGPRANISATTRKFVGEGRRGENHVAKNKFVLKLKIGF
MIFNRTRSFFSFIKQIQTTQLKQFYPSFHHQYYRTSILNMADSGEKLSKN
ELKRRLKAEQKAKEKAEKLAERQKTEAAKPTKQKKDAEGGAVEDEEILDP
NQYYKIRQQSVANYKKKGENPYPHKFNVDISLTEFIEKYNNVEPGTWHDD
RVSVAGRIHAKRLSGPKLIFYDLRGEGVKIQIMADQRSSEQDFGYIHGKI
RRGDIVGVKGRPGKTKKGELSIQPSEIELLSPCLHMLPHLHF
Run BLAST on NCBI

transcript from alignment at sc0001322:426..6742-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035516 ID=TCONS_00035516|Name=TCONS_00035516|organism=Clytia hemisphaerica|type=transcript|length=6317bp|location=Sequence derived from alignment at sc0001322:426..6742- (Clytia hemisphaerica)
CCACTTATCAGCGCCAAAAAGACCATAAAAAAGCTCTAAGTGGACCCCGG
GCTAACATCAGCGCGACCACGCGTAAATTTGTTGGGGAAGGAAGGAGAGG
AGAAAACCACGTAGCGAAAAACAAATTTGTTTTGAAATTGAAGATTGGTT
TTATGATATTCAATAGAACTCGATCATTTTTTTCTTTTATCAAACAAATA
CAAACGACTCAACTCAAACAATTTTACCCATCTTTTCATCATCAATATTA
TAGAACATCAATTCTCAACATGGCTGACAGCGGTGAAAAACTCAGCAAAA
AGTAAGTTATATCAGGGATTTTTCCAAGCACCAAGCAATGCCTCCGTTTT
TACTTTCAAATTGAGTTTTTAACAAAGGTGTAAGCCGCGATATCAGGACC
CTGTGGGTCCAGGGCTAGCCCTGGTGGGGGGTTCAGAAAGCTGAGCATAT
TTTTGTCTTAACTAGCACTTTAAAACGGTTAAAATTGAATGAATTTATAG
AATTTATCAATGAACTCAATTTGAATTGAGTTTAATGCCACCGTCTAACG
GGGGCATTTGGGTGCTTGGAAAAGACACTGTTATATTTCTTGTGAATCCA
CCTGTAAAGCCTGACAATATCCTCCAAAGGAAGGACAATTTCTTCTGGTG
TCAATAATTGCCATTTTTCTTGTATTTTTTTTAACACTTGATAGACCGTT
TTACCACAAATTCTGTGATTTGCATCTATTCAATCAACTACACCGTCAAA
CGGTTCTAAAGCTTGGGACGATTGGTCAGATCTTAGGACGATTGGTCAGA
TCTTAGGATGGTTGATTTCTGGACATAATCATACTTTTGTCATAACAGGT
CACAATAACTTTCACTGATGATGATGTGTGATGTTGTTTTGAGGGGCGTC
GTAATCTATTTAGACTACCTTTGCCCATTGTGGATTTTGTTTAAACATCT
TAGTTCCTGCATTCAGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTTTGGTTGAAATTTTGCACACTCGTTCCTTAGGTGA
ATATCTGGGGGTGTTTTTTCCATTTTTTGAAAATTTTGATTTTTGGGGAC
TGGGGACGAGTTTTTCGCCAAAACGAGGCTAAAATTTTGGGGCAGCCTGG
AAACTTCAAAAATGGTCGGATTTGGTTGAAATTTTGCACACTCGTTCCTT
AGGTGAATATCTGGGGGTGTTTTTTTCATTTTTTGAAAATTTTGATTTTT
GGGGCCTGGGCACGAGTTTTTCGCCAAAACGAGGCTAAGACTTTGGGGCA
GCCTGGAGACTTCAAAAGATGGTCGATTTGGCTGAAATTTTGCACACTTG
TTCCTTGGGTGAATATCTGGGGGTGTTTTTTTCATTTTTTGAAAATTTTG
ATTTTTGGGGCCTGGGCACGAGTTTTTCGCCAAAACGAGGCTAAGACTTT
GGGGCAGCCTGGAGACTTCAAAAATTGTTCGATTTGGCTGAAATTTTGCA
CACTTTGTTCCTTGGGTGAATATCTGGGGGCGTTTTTTACATTTTTTGAA
AATTTTGATTTTTGGGGCCTGGGAACGAGTTTTTTGCCAAAAAGAGGCTA
AAGCTTTGGAGCAGTCCAAAATGATCGGATTTGGTTGAAATTTGGCACAC
TTGTTCATTGGGTGAATATCTGGGGGTCTACAATTGGGCCTATGAATGAT
TTGAAGCCACTGAAGTTGAGCCCAGTGCGTTGCGCACGTTCGACTATTTT
TTAACAGGTCACAATAACTTTCACTGATAGCGTGCCCTTTTTAACTTTTT
TGTTTTCATTCAAAATGACTGGATATTGGAGACTCCAATATTGGAGAATT
AGAGAACGCCCGCCGCCTACTAACCGCCTATTGCCCGATGTGATCAACAA
ATAACGAGTGTGTAACTCCATCGTTTTGCCACTAATTTGGTATTCTTTGT
TCCAGACATTCAGATTTTTTTCATATTTCAATTTAATAGCCTACTTGGTG
CTATTTTCTTTAATAAGCCGTTCGTTTAACTCAAATCAAATGACTTTGGA
AGTTCAGTGAAATGGTGACCGAATTGCCAACCCATGTTTTGTCAGATAGT
CCCAAGTTAGAGCAGTTGACGGTAAAGCATCTTCTGAAAATTTCGTTCTT
CCCGCCATATATAAATGCGAAAATGAAAAGCGAAAAAATTTTCATTTTGT
AATTGTTATTTTATTCTGCCATAAAGAATGACACGTTCTCCTTCTCCTAA
TAACAGTATAGACCAAAACTCCTATATCAAGATTACAAGATTTGGAGTGC
GGGCCGTTTTTACTTTCATTTTCAGTGGTTTCACGTTCGATTTCAAGCCA
ACATCTTAGCAACGGGGTGCTCACCGATAGTTACAGGGGTTTGTGCAAAA
AAACAAACTTAGAAAGTTTTCCAAATCCCTTATTTATTGCACTAATTCTT
CAGTATGGACTTACAGGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NGCCAGGCCTGGTTAATAGGATCTGGAAAATTCAAACTCTCAGCCCATAC
CATGCTATATATTTCGCCATCGGTATATAGAATAAGTAATCATAGCATGG
ATCTCCAGCCTACCTCATTGGTGGAAATTTTATAAACAGCTGCGAAGGAG
TGCCAGGAAGCAATCAGTATAAGAAACCACTTTCGTTTTTGTTGCAGATT
TTGATATAAACTTCTCTCAGTCAGGGATTACTTGGCAATGTGTTGTGTCA
ACTTGTCAGCATTGTATTTGTTGTAAAGAGGTAACACTAGCCTAGTTTCT
AATCCTGCTATAAGAGTTTAAGTTTAAACTATTCTTCAAAATGAAAATAT
TTAAGATTTTAAGTTCTTCTTTTATTCAATGATTTTTTACGGCAGGACTT
ATTTTAGTAATTCCAAGAGGGGCAGCGTCCGATAATCAGACGCTTAAAGG
GCATGAAAAAGTGCCTAACTCCCTCTGAAGCAAGAAACTAGCAATTTTCA
AACCACATGTCTGTCTTATCTTTCTTTACAGTGAATTAAAGAGAAGGCTG
AAAGCAGAACAAAAAGCAAAAGAAAAAGCTGAAAAATTGGCTGAAAGACA
AAAGGTATATTCTTGTCAATAAAAATTTGTATAAATTGTTATAACTTTTA
ATTGATGTGTGAATCTATATAATAACCTTTCTATTAATATGCTAATGTAT
AATCATAATCAAATTTTATCTTAGTGTTTTTACGTAAGCAATATCTACTC
CATTTTTACAGACAGAAGCTGCCAAACCAACAAAGCAAAAGAAAGATGCT
GAGGGTGGAGCTGTCGAAGATGAAGAAATCTTAGACCCAAATCAATATTA
TAAGATCCGTCAACAATCTGTCGCTAATTACAAAAAGAAGGGTGAAAACC
CCTACCCTCATAAGTTTAATGTGGACATCTCTTTGACGGAGTTCATTGAA
AAATACAATAATGTTGAACCAGGAACATGGCATGACGATCGTGTATCAGT
AGCAGGTATTCTTTTTTCTTGGATGTTGTGAAAGATGTTCAGTGCTAGTG
AGTTTGTATATAGCATCATTATGTTAAAAAGATAGCTCCTTCACCTTACT
AAGAGCTCAAAATGATACCTGTTTTATTTCAGGTCGAATTCATGCAAAAA
GATTATCTGGACCTAAATTGATCTTTTATGACTTGAGAGGGGAAGGTGTC
AAAATTCAAATTATGGCTGACCAAAGGTATGATATTGATATCTGCTTGTT
CATAGTCAAGACAACACAGTAACCAGATTTTTTTTCTAGCTTGTTCATTG
ACCTTTTTCTAACATTCTTTCTGTTTGCATAGATCTTCAGAACAAGATTT
TGGATACATCCATGGCAAGATCAGACGTGGTGACATCGTTGGTGTCAAAG
GACGACCAGGTAAAAGATTCATGTTATTGGTTAACAAGTATATTATAATA
TCAGAATTTGAACCCTTGTTTAATAAAGTCTTTTTTTATTATATGACAAT
TCAATGACTTTTAATGTTCCTTGTAGGTAAAACAAAGAAAGGAGAATTGA
GTATCCAGCCATCAGAAATTGAACTTTTATCGCCATGTTTGCATATGTTA
CCACATTTACATTTCGG

Coding sequence (CDS) from alignment at sc0001322:426..6742-

>TCONS_00035516 ID=TCONS_00035516|Name=TCONS_00035516|organism=Clytia hemisphaerica|type=CDS|length=5256bp|location=Sequence derived from alignment at sc0001322:426..6742- (Clytia hemisphaerica)
GTAAAACAAAGAAAGGAGAATTGAGTATCCAGCCATCAGAAATTGAACTT
TTATCGCCATGTTTGCATATGTTACCACATTTACATTTCATCTTCAGAAC
AAGATTTTGGATACATCCATGGCAAGATCAGACGTGGTGACATCGTTGGT
GTCAAAGGACGACCAGGTCGAATTCATGCAAAAAGATTATCTGGACCTAA
ATTGATCTTTTATGACTTGAGAGGGGAAGGTGTCAAAATTCAAATTATGG
CTGACCAAAGACAGAAGCTGCCAAACCAACAAAGCAAAAGAAAGATGCTG
AGGGTGGAGCTGTCGAAGATGAAGAAATCTTAGACCCAAATCAATATTAT
AAGATCCGTCAACAATCTGTCGCTAATTACAAAAAGAAGGGTGAAAACCC
CTACCCTCATAAGTTTAATGTGGACATCTCTTTGACGGAGTTCATTGAAA
AATACAATAATGTTGAACCAGGAACATGGCATGACGATCGTGTATCAGTA
GCAGTGAATTAAAGAGAAGGCTGAAAGCAGAACAAAAAGCAAAAGAAAAA
GCTGAAAAATTGGCTGAAAGACAAAAGACTTATCAGCGCCAAAAAGACCA
TAAAAAAGCTCTAAGTGGACCCCGGGCTAACATCAGCGCGACCACGCGTA
AATTTGTTGGGGAAGGAAGGAGAGGAGAAAACCACGTAGCGAAAAACAAA
TTTGTTTTGAAATTGAAGATTGGTTTTATGATATTCAATAGAACTCGATC
ATTTTTTTCTTTTATCAAACAAATACAAACGACTCAACTCAAACAATTTT
ACCCATCTTTTCATCATCAATATTATAGAACATCAATTCTCAACATGGCT
GACAGCGGTGAAAAACTCAGCAAAAAGTAAAACAAAGAAAGGAGAATTGA
GTATCCAGCCATCAGAAATTGAACTTTTATCGCCATGTTTGCATATGTTA
CCACATTTACATTTCATCTTCAGAACAAGATTTTGGATACATCCATGGCA
AGATCAGACGTGGTGACATCGTTGGTGTCAAAGGACGACCAGGTCGAATT
CATGCAAAAAGATTATCTGGACCTAAATTGATCTTTTATGACTTGAGAGG
GGAAGGTGTCAAAATTCAAATTATGGCTGACCAAAGACAGAAGCTGCCAA
ACCAACAAAGCAAAAGAAAGATGCTGAGGGTGGAGCTGTCGAAGATGAAG
AAATCTTAGACCCAAATCAATATTATAAGATCCGTCAACAATCTGTCGCT
AATTACAAAAAGAAGGGTGAAAACCCCTACCCTCATAAGTTTAATGTGGA
CATCTCTTTGACGGAGTTCATTGAAAAATACAATAATGTTGAACCAGGAA
CATGGCATGACGATCGTGTATCAGTAGCAGTGAATTAAAGAGAAGGCTGA
AAGCAGAACAAAAAGCAAAAGAAAAAGCTGAAAAATTGGCTGAAAGACAA
AAGACTTATCAGCGCCAAAAAGACCATAAAAAAGCTCTAAGTGGACCCCG
GGCTAACATCAGCGCGACCACGCGTAAATTTGTTGGGGAAGGAAGGAGAG
GAGAAAACCACGTAGCGAAAAACAAATTTGTTTTGAAATTGAAGATTGGT
TTTATGATATTCAATAGAACTCGATCATTTTTTTCTTTTATCAAACAAAT
ACAAACGACTCAACTCAAACAATTTTACCCATCTTTTCATCATCAATATT
ATAGAACATCAATTCTCAACATGGCTGACAGCGGTGAAAAACTCAGCAAA
AAGTAAAACAAAGAAAGGAGAATTGAGTATCCAGCCATCAGAAATTGAAC
TTTTATCGCCATGTTTGCATATGTTACCACATTTACATTTCATCTTCAGA
ACAAGATTTTGGATACATCCATGGCAAGATCAGACGTGGTGACATCGTTG
GTGTCAAAGGACGACCAGGTCGAATTCATGCAAAAAGATTATCTGGACCT
AAATTGATCTTTTATGACTTGAGAGGGGAAGGTGTCAAAATTCAAATTAT
GGCTGACCAAAGACAGAAGCTGCCAAACCAACAAAGCAAAAGAAAGATGC
TGAGGGTGGAGCTGTCGAAGATGAAGAAATCTTAGACCCAAATCAATATT
ATAAGATCCGTCAACAATCTGTCGCTAATTACAAAAAGAAGGGTGAAAAC
CCCTACCCTCATAAGTTTAATGTGGACATCTCTTTGACGGAGTTCATTGA
AAAATACAATAATGTTGAACCAGGAACATGGCATGACGATCGTGTATCAG
TAGCAGTGAATTAAAGAGAAGGCTGAAAGCAGAACAAAAAGCAAAAGAAA
AAGCTGAAAAATTGGCTGAAAGACAAAAGACTTATCAGCGCCAAAAAGAC
CATAAAAAAGCTCTAAGTGGACCCCGGGCTAACATCAGCGCGACCACGCG
TAAATTTGTTGGGGAAGGAAGGAGAGGAGAAAACCACGTAGCGAAAAACA
AATTTGTTTTGAAATTGAAGATTGGTTTTATGATATTCAATAGAACTCGA
TCATTTTTTTCTTTTATCAAACAAATACAAACGACTCAACTCAAACAATT
TTACCCATCTTTTCATCATCAATATTATAGAACATCAATTCTCAACATGG
CTGACAGCGGTGAAAAACTCAGCAAAAAGTAAAACAAAGAAAGGAGAATT
GAGTATCCAGCCATCAGAAATTGAACTTTTATCGCCATGTTTGCATATGT
TACCACATTTACATTTCATCTTCAGAACAAGATTTTGGATACATCCATGG
CAAGATCAGACGTGGTGACATCGTTGGTGTCAAAGGACGACCAGGTCGAA
TTCATGCAAAAAGATTATCTGGACCTAAATTGATCTTTTATGACTTGAGA
GGGGAAGGTGTCAAAATTCAAATTATGGCTGACCAAAGACAGAAGCTGCC
AAACCAACAAAGCAAAAGAAAGATGCTGAGGGTGGAGCTGTCGAAGATGA
AGAAATCTTAGACCCAAATCAATATTATAAGATCCGTCAACAATCTGTCG
CTAATTACAAAAAGAAGGGTGAAAACCCCTACCCTCATAAGTTTAATGTG
GACATCTCTTTGACGGAGTTCATTGAAAAATACAATAATGTTGAACCAGG
AACATGGCATGACGATCGTGTATCAGTAGCAGTGAATTAAAGAGAAGGCT
GAAAGCAGAACAAAAAGCAAAAGAAAAAGCTGAAAAATTGGCTGAAAGAC
AAAAGACTTATCAGCGCCAAAAAGACCATAAAAAAGCTCTAAGTGGACCC
CGGGCTAACATCAGCGCGACCACGCGTAAATTTGTTGGGGAAGGAAGGAG
AGGAGAAAACCACGTAGCGAAAAACAAATTTGTTTTGAAATTGAAGATTG
GTTTTATGATATTCAATAGAACTCGATCATTTTTTTCTTTTATCAAACAA
ATACAAACGACTCAACTCAAACAATTTTACCCATCTTTTCATCATCAATA
TTATAGAACATCAATTCTCAACATGGCTGACAGCGGTGAAAAACTCAGCA
AAAAGTAAAACAAAGAAAGGAGAATTGAGTATCCAGCCATCAGAAATTGA
ACTTTTATCGCCATGTTTGCATATGTTACCACATTTACATTTCATCTTCA
GAACAAGATTTTGGATACATCCATGGCAAGATCAGACGTGGTGACATCGT
TGGTGTCAAAGGACGACCAGGTCGAATTCATGCAAAAAGATTATCTGGAC
CTAAATTGATCTTTTATGACTTGAGAGGGGAAGGTGTCAAAATTCAAATT
ATGGCTGACCAAAGACAGAAGCTGCCAAACCAACAAAGCAAAAGAAAGAT
GCTGAGGGTGGAGCTGTCGAAGATGAAGAAATCTTAGACCCAAATCAATA
TTATAAGATCCGTCAACAATCTGTCGCTAATTACAAAAAGAAGGGTGAAA
ACCCCTACCCTCATAAGTTTAATGTGGACATCTCTTTGACGGAGTTCATT
GAAAAATACAATAATGTTGAACCAGGAACATGGCATGACGATCGTGTATC
AGTAGCAGTGAATTAAAGAGAAGGCTGAAAGCAGAACAAAAAGCAAAAGA
AAAAGCTGAAAAATTGGCTGAAAGACAAAAGACTTATCAGCGCCAAAAAG
ACCATAAAAAAGCTCTAAGTGGACCCCGGGCTAACATCAGCGCGACCACG
CGTAAATTTGTTGGGGAAGGAAGGAGAGGAGAAAACCACGTAGCGAAAAA
CAAATTTGTTTTGAAATTGAAGATTGGTTTTATGATATTCAATAGAACTC
GATCATTTTTTTCTTTTATCAAACAAATACAAACGACTCAACTCAAACAA
TTTTACCCATCTTTTCATCATCAATATTATAGAACATCAATTCTCAACAT
GGCTGACAGCGGTGAAAAACTCAGCAAAAAGTAAAACAAAGAAAGGAGAA
TTGAGTATCCAGCCATCAGAAATTGAACTTTTATCGCCATGTTTGCATAT
GTTACCACATTTACATTTCATCTTCAGAACAAGATTTTGGATACATCCAT
GGCAAGATCAGACGTGGTGACATCGTTGGTGTCAAAGGACGACCAGGTCG
AATTCATGCAAAAAGATTATCTGGACCTAAATTGATCTTTTATGACTTGA
GAGGGGAAGGTGTCAAAATTCAAATTATGGCTGACCAAAGACAGAAGCTG
CCAAACCAACAAAGCAAAAGAAAGATGCTGAGGGTGGAGCTGTCGAAGAT
GAAGAAATCTTAGACCCAAATCAATATTATAAGATCCGTCAACAATCTGT
CGCTAATTACAAAAAGAAGGGTGAAAACCCCTACCCTCATAAGTTTAATG
TGGACATCTCTTTGACGGAGTTCATTGAAAAATACAATAATGTTGAACCA
GGAACATGGCATGACGATCGTGTATCAGTAGCAGTGAATTAAAGAGAAGG
CTGAAAGCAGAACAAAAAGCAAAAGAAAAAGCTGAAAAATTGGCTGAAAG
ACAAAAGACTTATCAGCGCCAAAAAGACCATAAAAAAGCTCTAAGTGGAC
CCCGGGCTAACATCAGCGCGACCACGCGTAAATTTGTTGGGGAAGGAAGG
AGAGGAGAAAACCACGTAGCGAAAAACAAATTTGTTTTGAAATTGAAGAT
TGGTTTTATGATATTCAATAGAACTCGATCATTTTTTTCTTTTATCAAAC
AAATACAAACGACTCAACTCAAACAATTTTACCCATCTTTTCATCATCAA
TATTATAGAACATCAATTCTCAACATGGCTGACAGCGGTGAAAAACTCAG
CAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020773XLOC_020773Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035516-proteinTCONS_00035516-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035516-exon-sc0001322-1575043694:6442..6742TCONS_00035516-exon-sc0001322-1575043694:6442..6742Clytia hemisphaericaexon
TCONS_00035516-exon-sc0001322-1575043694:1439..1511TCONS_00035516-exon-sc0001322-1575043694:1439..1511Clytia hemisphaericaexon
TCONS_00035516-exon-sc0001322-1575043694:1038..1281TCONS_00035516-exon-sc0001322-1575043694:1038..1281Clytia hemisphaericaexon
TCONS_00035516-exon-sc0001322-1575043694:817..910TCONS_00035516-exon-sc0001322-1575043694:817..910Clytia hemisphaericaexon
TCONS_00035516-exon-sc0001322-1575043694:634..710TCONS_00035516-exon-sc0001322-1575043694:634..710Clytia hemisphaericaexon
TCONS_00035516-exon-sc0001322-1575043694:426..516TCONS_00035516-exon-sc0001322-1575043694:426..516Clytia hemisphaericaexon
TCONS_00035516-exon-sc0001322-1510915933:6442..6742TCONS_00035516-exon-sc0001322-1510915933:6442..6742Clytia hemisphaericaexon
TCONS_00035516-exon-sc0001322-1510915933:1439..1511TCONS_00035516-exon-sc0001322-1510915933:1439..1511Clytia hemisphaericaexon
TCONS_00035516-exon-sc0001322-1510915933:1038..1281TCONS_00035516-exon-sc0001322-1510915933:1038..1281Clytia hemisphaericaexon
TCONS_00035516-exon-sc0001322-1510915933:817..910TCONS_00035516-exon-sc0001322-1510915933:817..910Clytia hemisphaericaexon
TCONS_00035516-exon-sc0001322-1510915933:634..710TCONS_00035516-exon-sc0001322-1510915933:634..710Clytia hemisphaericaexon
TCONS_00035516-exon-sc0001322-1510915933:426..516TCONS_00035516-exon-sc0001322-1510915933:426..516Clytia hemisphaericaexon
TCONS_00035516-exon-sc0001322-1491911889:6442..6742TCONS_00035516-exon-sc0001322-1491911889:6442..6742Clytia hemisphaericaexon
TCONS_00035516-exon-sc0001322-1491911889:1439..1511TCONS_00035516-exon-sc0001322-1491911889:1439..1511Clytia hemisphaericaexon
TCONS_00035516-exon-sc0001322-1491911889:1038..1281TCONS_00035516-exon-sc0001322-1491911889:1038..1281Clytia hemisphaericaexon
TCONS_00035516-exon-sc0001322-1491911889:817..910TCONS_00035516-exon-sc0001322-1491911889:817..910Clytia hemisphaericaexon
TCONS_00035516-exon-sc0001322-1491911889:634..710TCONS_00035516-exon-sc0001322-1491911889:634..710Clytia hemisphaericaexon
TCONS_00035516-exon-sc0001322-1491911889:426..516TCONS_00035516-exon-sc0001322-1491911889:426..516Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001322supercontigsc0001322:426..6742 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
84.1349	84.2223	25.4671	18.1927	56.8512	47.8914	65.9133	72.8431	45.4453	55.7432	58.1461	42.4104	44.1493	40.1684	48.2853	55.2062	56.2207	55.6017	22.8294	24.139	59.3556	64.3945	68.3774	69.0148	41.12	45.7739	45.3618	37.5574	68.3538	61.1388
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004365NA-bd_OB_tRNA
IPR012340NA-bd_OB-fold
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
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BLAST of TCONS_00035516 vs. Swiss-Prot (Human)
Match: SYK (Lysine--tRNA ligase OS=Homo sapiens GN=KARS PE=1 SV=3)

HSP 1 Score: 216.083 bits (549), Expect = 1.150e-64
Identity = 104/158 (65.82%), Postives = 129/158 (81.65%), Query Frame = 3 
Query:  414 EGGAVEDEEILDPNQYYKIRQQSVANYKKKGENPYPHKFNVDISLTEFIEKYNNVEPGT-WHDDRVSVAGRIHAKRLSGPKLIFYDLRGEGVKIQIMADQRS--SEQDFGYIHGKIRRGDIVGVKGRPGKTKKGELSIQPSEIELLSPCLHMLPHLHF 878
            + G   +EE +DPNQYYKIR Q++   K  GE+PYPHKF+VDISLT+FI+KY++++PG    D  + VAGRIHAKR SG KLIFYDLRGEGVK+Q+MA+ R+  SE++F +I+ K+RRGDI+GV+G PGKTKKGELSI P EI LLSPCLHMLPHLHF
Sbjct:   61 DNGVGPEEESVDPNQYYKIRSQAIHQLKVNGEDPYPHKFHVDISLTDFIQKYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHF 218
The following BLAST results are available for this feature:
BLAST of TCONS_00035516 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SYK1.150e-6465.82Lysine--tRNA ligase OS=Homo sapiens GN=KARS PE=1 S... [more]
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