TCONS_00031522-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00031522-protein
Unique Name	TCONS_00031522-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	561

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00031522-protein ID=TCONS_00031522-protein|Name=TCONS_00031522-protein|organism=Clytia hemisphaerica|type=polypeptide|length=561bp
TTEEADKLKQLLKNDSDKVKLLELIADLSRVESNRQKFTDKTFFEDLITF
VNNDKPDLVLQAIRCLCNISAENEDAKSIFCEFEGVKKLLSKAEEIIDKD
DAAWNNLVCPACSCIQNLVVDSETVHKAFLNENAMNVLWRYLAKFHSKDT
KIASVTLSGLSSLGENDYGLQNLYDSGVLKLVVKLLNVASDETTKLIFQN
LLKEVSNQEPGKKYLNQCDSFTEISKIIENRANFKETEIDDVTKEMADFV
VVLTSGEESFNVLKKSDPDFLKRFSSWIQSPNKHIQVSAGLALGNYARDE
ETCNDIVRIGIHENLINVMTENLKDESFSDRAQAYGACLRNLCIPVHNKK
ILYKAGLHTMAISYIMESDSLAAQFKALAILRLLVQDNIELSSSICLNKA
LVDKVLELAGTSVVSSVPAESQRLLAAAIKYSSSEVTIKGILKSATVLDT
ILALLLSEHTIMQSEGLIALIMIAANMPDCIDLFKEKECVPKVFTLLKKP
EVQAQTCFNGLTCFQAVMSINGGKDLLVSNGVDEVFEILSKHGEDIIKNK
ATETKELLDSL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_018124	XLOC_018124	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00031522	TCONS_00031522	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011989	ARM-like
IPR016024	ARM-type_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 1..242 e-value: 1.6E-18 score: 66.2
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 243..424 e-value: 3.4E-9 score: 35.9
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 425..561 e-value: 1.0E-7 score: 31.0
None	No IPR available	CDD	cd00020	ARM	coord: 47..162 e-value: 3.03136E-6 score: 44.6128
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 265..545
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 13..325

Blast

[Close]

BLAST of TCONS_00031522-protein vs. Swiss-Prot (Human)
Match: GDS1 (Rap1 GTPase-GDP dissociation stimulator 1 OS=Homo sapiens GN=RAP1GDS1 PE=1 SV=3)

HSP 1 Score: 146.747 bits (369), Expect = 1.491e-37
Identity = 117/458 (25.55%), Postives = 225/458 (49.13%), Query Frame = 0

Query:   11 LLKNDSDKVKLLELIADLSRVESNRQKFTDKTFFEDLITFVNNDKPDLVLQAIRCLCNISAENEDAKSIFCEFEGVKKLLSKAEEIIDKDDAAWNNLVCPACSCIQNLVVDSETVHKAFLNENAMNVLWRYLAKFHSKDTKIASVTLSGLSSLGENDYGLQNLYDSGVLKLVVKLLNVASDETTKLIFQNLLKEVSNQEPGKKYLNQCDSFTEISKIIENRANFKETEIDDVT--KEMADFVVVLTSGEESFNVL-KKSDPDFLKRFSSWIQSPNKHIQVSAGLALGNYARDEETCNDIVRIGIHENLINVMTENLKDESFSDRAQAYGACLRNLCIPVHNKKILYKAGLHTMAISYIMESDSLAAQFKALAILRLLVQDNIELSSSICLNKALVDKVLELAGTSVVSSVPAESQRLLAAAIKYSSSEVTIKGILKSATVLDTILALLLSEHTIMQSE 465
            L    S K K+  +IA++++ E  R    D      L+  +N+   +++LQ  R L NI  ++ + +S   +  G + ++     +    D A   L+   C  + N   +++++    +N   +  L + L   H ++  +  + L    +L E +   +    + + + +VKL     +   + +   +L  ++  +  K  L +      + +I++ + +  +   DD+T  K  +D +V+L  G+ES   L +       +R  SWI S N  +Q++  LA+ N+AR++  C  +V  GI E L++++  +++D + + +  A  A LRNL IPV NK  +  AG+ T A+   ++S+    QFK L  LR+L+    E +  +  N  LV++++E       + V  ES RLL+A I++S S+  IK I++S  +   ++ +  SEH IMQ+E
Sbjct:   58 LTPQSSCKAKVANIIAEVAKNEFMRIPCVDAGLISPLVQLLNSKDQEVLLQTGRALGNICYDSHEGRSAVDQAGGAQIVIDHLRSLCSITDPANEKLLTVFCGMLMNYSNENDSLQAQLINMGVIPTLVKLLG-IHCQNAALTEMCLVAFGNLAELESSKEQFASTNIAEELVKLFKKQIEHDKREMIFEVLAPLAENDAIKLQLVEAGLVECLLEIVQQKVDSDKE--DDITELKTGSDLMVLLLLGDESMQKLFEGGKGSVFQRVLSWIPSNNHQLQLAGALAIANFARNDANCIHMVDNGIVEKLMDLLDRHVEDGNVTVQHAALSA-LRNLAIPVINKAKMLSAGV-TEAVLKFLKSEMPPVQFKLLGTLRMLIDAQAEAAEQLGKNVKLVERLVEWCEAKDHAGVMGESNRLLSALIRHSKSKDVIKTIVQSGGI-KHLVTMATSEHVIMQNE 509

The following BLAST results are available for this feature:

BLAST of TCONS_00031522-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00031522-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GDS1	1.491e-37	25.55	Rap1 GTPase-GDP dissociation stimulator 1 OS=Homo ...	[more]

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TCONS_00031522-protein (polypeptide) - C. hemisphaerica