|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00031522 ID=TCONS_00031522|Name=TCONS_00031522|organism=Clytia hemisphaerica|type=transcript|length=2169bpRun BLAST on NCBI protein sequence of TCONS_00031522-protein >TCONS_00031522-protein ID=TCONS_00031522-protein|Name=TCONS_00031522-protein|organism=Clytia hemisphaerica|type=polypeptide|length=561bp TTEEADKLKQLLKNDSDKVKLLELIADLSRVESNRQKFTDKTFFEDLITFRun BLAST on NCBI transcript from alignment at sc0000903:55744..61445- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00031522 ID=TCONS_00031522|Name=TCONS_00031522|organism=Clytia hemisphaerica|type=transcript|length=5702bp|location=Sequence derived from alignment at sc0000903:55744..61445- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000903:55744..61445- >TCONS_00031522 ID=TCONS_00031522|Name=TCONS_00031522|organism=Clytia hemisphaerica|type=CDS|length=23604bp|location=Sequence derived from alignment at sc0000903:55744..61445- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00031522 vs. Swiss-Prot (Human)
Match: GDS1 (Rap1 GTPase-GDP dissociation stimulator 1 OS=Homo sapiens GN=RAP1GDS1 PE=1 SV=3) HSP 1 Score: 139.043 bits (349), Expect = 2.380e-34 Identity = 117/458 (25.55%), Postives = 225/458 (49.13%), Query Frame = 1
Query: 31 LLKNDSDKVKLLELIADLSRVESNRQKFTDKTFFEDLITFVNNDKPDLVLQAIRCLCNISAENEDAKSIFCEFEGVKKLLSKAEEIIDKDDAAWNNLVCPACSCIQNLVVDSETVHKAFLNENAMNVLWRYLAKFHSKDTKIASVTLSGLSSLGENDYGLQNLYDSGXXXXXXXXXXXASDETTKLIFQNLLKEVSNQEPGKKYLNQCDSFTEISKIIENRANFKETEIDDVT--KEMADFVVVLTSGEESFNVL-KKSDPDFLKRFSSWIQSPNKHIQVSAGLALGNYARDEETCNDIVRIGIHENLINVMTENLKDESFSDRAQAYGACLRNLCIPVHNKKILYKAGLHTMAISYIMESDSLAAQFKALAILRLLVQDNIELSSSICLNKALVDKVLELAGTSVVSSVPAESQRLLAAAIKYSSSEVTIKGILKSATVLDTILALLLSEHTIMQSE 1395
L S K K+ +IA++++ E R D L+ +N+ +++LQ R L NI ++ + +S + G + ++ + D A L+ C + N +++++ +N + L + L H ++ + + L +L E + + + + + +VKL + + + +L ++ + K L + + +I++ + + + DD+T K +D +V+L G+ES L + +R SWI S N +Q++ LA+ N+AR++ C +V GI E L++++ +++D + + + A A LRNL IPV NK + AG+ T A+ ++S+ QFK L LR+L+ E + + N LV++++E + V ES RLL+A I++S S+ IK I++S + ++ + SEH IMQ+E
Sbjct: 58 LTPQSSCKAKVANIIAEVAKNEFMRIPCVDAGLISPLVQLLNSKDQEVLLQTGRALGNICYDSHEGRSAVDQAGGAQIVIDHLRSLCSITDPANEKLLTVFCGMLMNYSNENDSLQAQLINMGVIPTLVKLLG-IHCQNAALTEMCLVAFGNLAELESSKEQFASTNIAEELVKLFKKQIEHDKREMIFEVLAPLAENDAIKLQLVEAGLVECLLEIVQQKVDSDKE--DDITELKTGSDLMVLLLLGDESMQKLFEGGKGSVFQRVLSWIPSNNHQLQLAGALAIANFARNDANCIHMVDNGIVEKLMDLLDRHVEDGNVTVQHAALSA-LRNLAIPVINKAKMLSAGV-TEAVLKFLKSEMPPVQFKLLGTLRMLIDAQAEAAEQLGKNVKLVERLVEWCEAKDHAGVMGESNRLLSALIRHSKSKDVIKTIVQSGGI-KHLVTMATSEHVIMQNE 509 The following BLAST results are available for this feature:
BLAST of TCONS_00031522 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.