TCONS_00028112-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00028112-protein
Unique NameTCONS_00028112-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length158

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00028112-protein ID=TCONS_00028112-protein|Name=TCONS_00028112-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
MSQTPINQMQDRKPDINILTQQLKTAQSFAGPITPTATVKVEPKEEEQMP
TSGTNLSEFVNQLEDYVPTVPDAVTVSYMQRAGFENIDPRIVRLISLASQ
KFVSDIAHDALQHCKMRGQSGQSSRKSGKDKRYTLSMDDLSPALNEYGVH
VKKPPYFT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_015903XLOC_015903Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00028112TCONS_00028112Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003923TFIID_30kDa
Vocabulary: Biological Process
TermDefinition
GO:0006352DNA-templated transcription, initiation
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006352 DNA-templated transcription, initiation
cellular_component GO:0005634 nucleus
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003923Transcription initiation factor TFIID, 23-30kDa subunitPRINTSPR01443TFIID30KDSUBcoord: 132..154
score: 53.91
coord: 68..84
score: 48.24
coord: 88..110
score: 66.96
IPR003923Transcription initiation factor TFIID, 23-30kDa subunitPIRSFPIRSF017246TFIID_TAF10coord: 2..158
e-value: 2.3E-50
score: 168.9
IPR003923Transcription initiation factor TFIID, 23-30kDa subunitPFAMPF03540TFIID_30kDacoord: 68..117
e-value: 6.2E-24
score: 83.6
IPR003923Transcription initiation factor TFIID, 23-30kDa subunitCDDcd07982TAF10coord: 56..157
e-value: 4.38984E-57
score: 175.492

Blast
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BLAST of TCONS_00028112-protein vs. Swiss-Prot (Human)
Match: TAF10 (Transcription initiation factor TFIID subunit 10 OS=Homo sapiens GN=TAF10 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.103e-50
Identity = 72/107 (67.29%), Postives = 90/107 (84.11%), Query Frame = 0 
Query:   52 SGTNLSEFVNQLEDYVPTVPDAVTVSYMQRAGFENIDPRIVRLISLASQKFVSDIAHDALQHCKMRGQSGQSSRKSGKDKRYTLSMDDLSPALNEYGVHVKKPPYFT 158
            S T L +F+ QLEDY PT+PDAVT  Y+ RAGFE  DPRI+RLISLA+QKF+SDIA+DALQHCKM+G +  SSR   KD++YTL+M+DL+PAL+EYG++VKKP YFT
Sbjct:  112 SSTPLVDFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCKMKGTASGSSRSKSKDRKYTLTMEDLTPALSEYGINVKKPHYFT 218
The following BLAST results are available for this feature:
BLAST of TCONS_00028112-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TAF101.103e-5067.29Transcription initiation factor TFIID subunit 10 O... [more]
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