TCONS_00027904-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00027904-protein
Unique NameTCONS_00027904-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length214

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00027904-protein ID=TCONS_00027904-protein|Name=TCONS_00027904-protein|organism=Clytia hemisphaerica|type=polypeptide|length=214bp
MFGKKPTTKEVVKQQKRNLNKTGRELDRDYKQLERQEKALELEIKKAAKL
GNKQLATTYAKQLVAIRKQKSRNLSTKTKVGGIGHQMTAMQANAKMAESM
GTATKAMGAMNKQVDPQQLSKTLQEFEKESAKMDMTEEMMGDTLDDLLGE
SGDEEEQDAIVSQVLDEIGIEITGKMAGLPSTGSKLPSQAQAGSSKMSDE
DKEIEAMLAKLKAT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_015773XLOC_015773Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00027904TCONS_00027904Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005024Snf7_fam
Vocabulary: Biological Process
TermDefinition
GO:0007034vacuolar transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007034 vacuolar transport
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 204..214
NoneNo IPR availableCOILSCoilCoilcoord: 16..53
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 176..204
IPR005024Snf7 familyPFAMPF03357Snf7coord: 15..182
e-value: 6.5E-39
score: 133.2

Blast
[Close]
BLAST of TCONS_00027904-protein vs. Swiss-Prot (Human)
Match: CHM2B (Charged multivesicular body protein 2b OS=Homo sapiens GN=CHMP2B PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.110e-63
Identity = 108/208 (51.92%), Postives = 138/208 (66.35%), Query Frame = 0 
Query:    4 KKPTTKEVVKQQKRNLNKTGRELDRDYKQLERQEKALELEIKKAAKLGNKQLATTYAKQLVAIRKQKSRNLSTKTKVGGIGHQMTAMQANAKMAESMGTATKAMGAMNKQVDPQQLSKTLQEFEKESAKMDMTEEMMGDTLDDLLGESGDEEEQDAIVSQVLDEIGIEITGKMAGLPSTGSKLPSQAQAGSSKMSDEDKEIEAMLAKL 211
            KK T  +V+K+Q R L  T R + RD   LE+QEK LELEIKK AK+GNK+     AKQLV +RKQK+R  +  +KV  +  Q   M +  KMA +M T  K M A+NK++DPQ+  +T+Q F+KE+ KM+MTEEM+ DTLDD+   S DEEE   IV+QVLDEIGIEI+GKMA  PS    LPS   A +SK +  D+EIE  L  L
Sbjct:    6 KKKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACKVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAKAPSAARSLPS---ASTSKATISDEEIERQLKAL 210
The following BLAST results are available for this feature:
BLAST of TCONS_00027904-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHM2B1.110e-6351.92Charged multivesicular body protein 2b OS=Homo sap... [more]
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