TCONS_00027904 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027904
Unique NameTCONS_00027904
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1051

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027904 ID=TCONS_00027904|Name=TCONS_00027904|organism=Clytia hemisphaerica|type=transcript|length=1051bp
TNAAATATTTGAAAGAATACGATGTATGGGAATTAAATAATTTCGAAACT
GAAATGATTTTTACAATGAGATACAATAAATTAATTACagtacaaaaata
acaaaaaacttACAATCACCTTTATTTTAATCAAAGATTCAAGTAGAAAA
ATTTGGTTTATACATGGTGATTATTAATTAACTAACAGTAATTCaaataa
atccaaaaagtgTTCAGGGGAGCCTCTTCAATTACAGGTTCCTTAGAAAA
TCTAAGTTATTGAATTTATATGAGTGACATGAGAATGCAAAAATACATTT
GTGATGAAAAGTAAAAGGATATAATAAATACAATTTTCTTCGCATTTATA
TTATGTTGCTTTCAGCTTGGCAAGCATTGCTTCAATTTCCTTATCCTCAT
CTGACATTTTGGATGATCCTGCTTGTGCTTGAGATGGTAATTTAGATCCA
GTTGATGGTAAACCAGCCATTTTCCCAGTAATTTCAATACCAATTTCATC
CAAAACTTGAGAAACAATGGCGTCTTGTTCTTCCTCGTCCCCAGATTCAC
CAAGCAAATCATCTAGTGTATCTCCCATCATTTCTTCTGTCATATCCATT
TTTGctgattctttttcaaattcttgtAGTGTTTTGCTCAGTTGTTGTGG
ATCAACTTGTTTATTCATAGCTCCCATCGCCTTTGTAGCGGTGCCCATCG
ATTCAGCCATTTTAGCATTAGCCTGCATTGCAGTCATCTGGTGCCCGATG
CCACCAACTTTAGTTTTTGTTGATAAGTTTCTGCTCTTTTGTTTACGAAT
GGCAACTAATTGTTTAGCATAAGTTGTTGCTAATTGCTTATTACCAAGTT
TAGCagcttttttgatttccaattctaaggctttttcttGCCTTTCCAGC
TGTTTATAGTCTCTGTCAAGCTCTCTACCAGTTTTAttcaagtttctttt
ttgttgttttacaaCCTCCTTGGTTGTAGGCTTTTTACCAAACATTTTTG
TGTTCTTTATCagttcaaactaaaaataaaaaatcaagttttaaaTTAAA
T
Run BLAST on NCBI

protein sequence of TCONS_00027904-protein

>TCONS_00027904-protein ID=TCONS_00027904-protein|Name=TCONS_00027904-protein|organism=Clytia hemisphaerica|type=polypeptide|length=214bp
MFGKKPTTKEVVKQQKRNLNKTGRELDRDYKQLERQEKALELEIKKAAKL
GNKQLATTYAKQLVAIRKQKSRNLSTKTKVGGIGHQMTAMQANAKMAESM
GTATKAMGAMNKQVDPQQLSKTLQEFEKESAKMDMTEEMMGDTLDDLLGE
SGDEEEQDAIVSQVLDEIGIEITGKMAGLPSTGSKLPSQAQAGSSKMSDE
DKEIEAMLAKLKAT
Run BLAST on NCBI

transcript from alignment at sc0000653:13732..14782

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027904 ID=TCONS_00027904|Name=TCONS_00027904|organism=Clytia hemisphaerica|type=transcript|length=1051bp|location=Sequence derived from alignment at sc0000653:13732..14782 (Clytia hemisphaerica)
ATTTAAtttaaaacttgattttttatttttagtttgaactGATAAAGAAC
ACAAAAATGTTTGGTAAAAAGCCTACAACCAAGGAGGttgtaaaacaaca
aaaaagaaacttgaaTAAAACTGGTAGAGAGCTTGACAGAGACTATAAAC
AGCTGGAAAGGCaagaaaaagccttagaattggaaatcaaaaaagctGCT
AAACTTGGTAATAAGCAATTAGCAACAACTTATGCTAAACAATTAGTTGC
CATTCGTAAACAAAAGAGCAGAAACTTATCAACAAAAACTAAAGTTGGTG
GCATCGGGCACCAGATGACTGCAATGCAGGCTAATGCTAAAATGGCTGAA
TCGATGGGCACCGCTACAAAGGCGATGGGAGCTATGAATAAACAAGTTGA
TCCACAACAACTGAGCAAAACACTacaagaatttgaaaaagaatcagCAA
AAATGGATATGACAGAAGAAATGATGGGAGATACACTAGATGATTTGCTT
GGTGAATCTGGGGACGAGGAAGAACAAGACGCCATTGTTTCTCAAGTTTT
GGATGAAATTGGTATTGAAATTACTGGGAAAATGGCTGGTTTACCATCAA
CTGGATCTAAATTACCATCTCAAGCACAAGCAGGATCATCCAAAATGTCA
GATGAGGATAAGGAAATTGAAGCAATGCTTGCCAAGCTGAAAGCAACATA
ATATAAATGCGAAGAAAATTGTATTTATTATATCCTTTTACTTTTCATCA
CAAATGTATTTTTGCATTCTCATGTCACTCATATAAATTCAATAACTTAG
ATTTTCTAAGGAACCTGTAATTGAAGAGGCTCCCCTGAAcactttttgga
tttatttGAATTACTGTTAGTTAATTAATAATCACCATGTATAAACCAAA
TTTTTCTACTTGAATCTTTGATTAAAATAAAGGTGATTGTaagttttttg
ttatttttgtactGTAATTAATTTATTGTATCTCATTGTAAAAATCATTT
CAGTTTCGAAATTATTTAATTCCCATACATCGTATTCTTTCAAATATTTN
A

Coding sequence (CDS) from alignment at sc0000653:13732..14782

>TCONS_00027904 ID=TCONS_00027904|Name=TCONS_00027904|organism=Clytia hemisphaerica|type=CDS|length=645bp|location=Sequence derived from alignment at sc0000653:13732..14782 (Clytia hemisphaerica)
ATGTTTGGTAAAAAGCCTACAACCAAGGAGGttgtaaaacaacaaaaaag
aaacttgaaTAAAACTGGTAGAGAGCTTGACAGAGACTATAAACAGCTGG
AAAGGCaagaaaaagccttagaattggaaatcaaaaaagctGCTAAACTT
GGTAATAAGCAATTAGCAACAACTTATGCTAAACAATTAGTTGCCATTCG
TAAACAAAAGAGCAGAAACTTATCAACAAAAACTAAAGTTGGTGGCATCG
GGCACCAGATGACTGCAATGCAGGCTAATGCTAAAATGGCTGAATCGATG
GGCACCGCTACAAAGGCGATGGGAGCTATGAATAAACAAGTTGATCCACA
ACAACTGAGCAAAACACTacaagaatttgaaaaagaatcagCAAAAATGG
ATATGACAGAAGAAATGATGGGAGATACACTAGATGATTTGCTTGGTGAA
TCTGGGGACGAGGAAGAACAAGACGCCATTGTTTCTCAAGTTTTGGATGA
AATTGGTATTGAAATTACTGGGAAAATGGCTGGTTTACCATCAACTGGAT
CTAAATTACCATCTCAAGCACAAGCAGGATCATCCAAAATGTCAGATGAG
GATAAGGAAATTGAAGCAATGCTTGCCAAGCTGAAAGCAACATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015773XLOC_015773Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027904-proteinTCONS_00027904-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027904-exon-sc0000653-1491911889:13732..14782TCONS_00027904-exon-sc0000653-1491911889:13732..14782Clytia hemisphaericaexon
TCONS_00027904-exon-sc0000653-1510915933:13732..14782TCONS_00027904-exon-sc0000653-1510915933:13732..14782Clytia hemisphaericaexon
TCONS_00027904-exon-sc0000653-1575043694:13732..14782TCONS_00027904-exon-sc0000653-1575043694:13732..14782Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000653supercontigsc0000653:13732..14782 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
186.321	177.584	150.136	143.71	57.9011	45.4848	61.3761	66.3346	73.7113	67.1581	101.385	43.9166	51.5338	34.6021	30.8163	35.099	59.0544	49.9598	43.1781	70.7269	58.0525	55.857	69.5682	69.2649	61.1173	57.9776	89.841	63.0162	77.0247	66.2781
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005024Snf7_fam
Vocabulary: Biological Process
TermDefinition
GO:0007034vacuolar transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007034 vacuolar transport
Blast
[Close]
BLAST of TCONS_00027904 vs. Swiss-Prot (Human)
Match: CHM2B (Charged multivesicular body protein 2b OS=Homo sapiens GN=CHMP2B PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 3.020e-40
Identity = 108/210 (51.43%), Postives = 138/210 (65.71%), Query Frame = -3 
Query:  363 FGKKPTTKEVVKQQKRNLNKTGRELDRDYKQLERQXXXXXXXXXXXXXLGNKQLATTYAKQLVAIRKQKSRNLSTKTKVGGIGHQMTAMQANAKMAESMGTATKAMGAMNKQVDPQQLSKTLQEFEKESAKMDMTEEMMXXXXXXXXXXXXXXXEQDAIVSQVLDEIGIEITGKMAGLPSTGSKLPSQAQAGSSKMSDEDKEIEAMLAKL 992
              KK T  +V+K+Q R L  T R + RD   LE+QEK LELEIKK AK+GNK+     AKQLV +RKQK+R  +  +KV  +  Q   M +  KMA +M T  K M A+NK++DPQ+  +T+Q F+KE+ KM+MTEEM+ DTLDD+   S DEEE   IV+QVLDEIGIEI+GKMA  PS    LPS   A +SK +  D+EIE  L  L
Sbjct:    4 LFKKKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACKVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAKAPSAARSLPS---ASTSKATISDEEIERQLKAL 210
The following BLAST results are available for this feature:
BLAST of TCONS_00027904 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHM2B3.020e-4051.43Charged multivesicular body protein 2b OS=Homo sap... [more]
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