TCONS_00025173-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00025173-protein
Unique NameTCONS_00025173-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1490

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00025173-protein ID=TCONS_00025173-protein|Name=TCONS_00025173-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1490bp
MLYNMTTLDHKSNLRKILSNSLVFQSVGYAFYGHLVEDEEESKDRVGQFI
TSFTNFWSHLTREQQEDESMIVEFVEFANQQRHHMRISYLYELLTATVQN
GIVSARIASEAILSSEYLTLENSLIWKLSFAFVATFLPQMDYKSVRSVYS
KLLTKVKNELPESLSNSQIELLQDVKKVVLLGLNRESSILPSYLVINDIY
KLYPVSNFQPHWVFGEEFTTFVNTFRPLAQMVSITGHSSLVPVVGHSGSS
NVWNLEPATLKFPLKGPLPYKKNLIKPQKDLLRHVIAQTYSRDMVCSMLG
LKKQQRQRCEALEGLLVELIIVAMEKTENGESHHLLWQHLSSQLIFFILF
QFASFPHMVLALHEKLSKRNLNKGRDHLMWVLLQFISGSIQKGPLSAFSP
VMKLFELLYPEKEPIKSVTEVESDSNISFAMACIWVHLSKKAETDNVPVA
LRSQIEMLGTTIKQKVEEGSYACPGFEVSLLCNAYSTNQESFQMPLNRLL
SRLYGAGQSNTKLGPNGVLVATNTSPLEMKLLDSLTIHAKMSLIQGVVRR
IIQIAHAYASQQPQNSIPLTPALVETYSRLLVYNEIELLGIKGFLSQLLP
MVLKSKAWGILHTLAEMFSYRLHHIQSHYRVHLLTNLYPLIVVPFTGKHQ
LYLCIQHAAIRLMMGFENSEIQMHLSTQRYQQEPKLLLSRDCEELNRVFV
LNVARAVQTTSADSLPFAWCEAVLKETIQMTPHRWSSSTLAAFPSSIQRF
YAANTNPQLXFPSSIQRFYAANTNPQLMQNKTGKPLHDKVELHYRKLKTF
AKEEDMVTYCAETADVHEIFLCIIWKVLNEQNMVTAFCHHVIMRLSHKPL
INYLSIFCDYIIHELKSCMGNMGNNQLKRIFSLINDMVWKYDILPLDRFL
LSLILRPLEDKEVHFAHLLINYLLIQLQEFKTRVNKFVSENHSQHWDQSN
WHEKHKQYHEQFPENFFYEGILKANNMTPAPGSLEYLPTYFGNICLRFIP
VFGIIIHRLIETKDLTLLESLLNEYGQLFKFHDRPITYLYNTLYFYEKQL
RDQNHIKKLLASVIINAQSENQPKDWASREFQEYVKDTNSIWSPNTQYLS
NLIERFVNTILDRNPPQFASCDWRFNEFSNPSSHVLHATCVELMTLPMHG
DAIGKSLIEVICKSGNANNSTFLHSDIMSWINATALILTSLPQSYLFTIN
QCVSDVLQNHLSKFVLTSTTSLPSFFDFCSNYSMNCATYPDFIVALFHAT
WLHAGVGQFVQLYSFLRDTLKPLIETETQLLYVLCLYGPFIQRFQSENQQ
HRCLFEICSEFYLIIEQVSRNCQTPLVFVDVMSDFLYHIKYMFVGDNLRG
VISNTMDNFHESLQKKLKFMVSPATTTPLAASGAASIKMENFGGPQQPLA
ATMTPQQQQSAQHQQQLIQQQLLLKLQQQKHLQQQQLQAQQQAQQQAQQQ
QVQQQAQQQQAQQQQAQQQQQLKQQNTQQNTTLQSPIDLT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_014139XLOC_014139Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00025173TCONS_00025173Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom
IPR021629Mediator_Med23
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1423..1478
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 928..1488
e-value: 2.6E-10
score: 38.8
IPR021629Mediator complex, subunit Med23PFAMPF11573Med23coord: 13..1345
e-value: 0.0
score: 1282.2

Blast
BLAST of TCONS_00025173-protein vs. Swiss-Prot (Human)
Match: MED23 (Mediator of RNA polymerase II transcription subunit 23 OS=Homo sapiens GN=MED23 PE=1 SV=2)

HSP 1 Score: 1117.45 bits (2889), Expect = 0.000e+0
Identity = 596/1430 (41.68%), Postives = 873/1430 (61.05%), Query Frame = 0
Query:   11 KSNLRKILSNSLVFQSVGYAFYGHLVEDEEESKDRVGQFITSFTNFWSHLTREQQEDESMIVEFVEFANQQRHHMRISYLYELLTATVQNGIVSARIASEAILSSEYLTLENSLIWKLSFAFVATFLPQMDYKSVRSVYSKLLTKVKNELPESLSNSQIELLQDVKKVVLLGLNRESSILPSYLVINDIYKLYPVSNFQPHWVFGEEFTTFVNTFRPLAQMVSITGHSSLVPVVGHSGS-SNVWNLEPATLKFPLKGPLPYKKNLIKPQKDLLRHVIAQTYSRDMVCSMLGLKKQQRQRCEALEGLLVELIIVAMEKTE------NGESHHLLWQHLSSQLIFFILFQFASFPHMVLALHEKLSKRNLNKGRDHLMWVLLQFISGSIQKGPLSAFSPVMKLFELLYPEKEPIKSVTEVESDSNISFAMACIWVHLSKKAETDN------VPVALRSQIEMLGTTIKQKVEEGSYACPGFEVSLLCNAYSTNQESFQMPLNRLLSRLYGAGQSNTKLGPNGVLVATNTSPLEMKLLDSLTIHAKMSLIQGVVRRIIQIAHAYASQQPQNSIPLTPALVETYSRLLVYNEIELLGIKGFLSQLLPMVLKSKAWGILHTLAEMFSYRLHHIQSHYRVHLLTNLYPLIVVPFTGKHQLYLCIQHAAIRLMMGFENSEIQMHLSTQRYQQEPKLLLSRDCEELNRVFVLNVARAVQT----TSADSLPFAWCEAVLKETIQMTPHRWSSSTLAAFPSSIQRFYAANTNPQLXFPSSIQRFYAANTNPQLMQNKTGKPLHDKVELHYRKLKTFAKEEDMVTYCAETADVHEIFLCIIWKVLNEQNMVTAFCHHVIMRLSHKPLINYLSIFCDYIIHELKSCMGNMGNNQLKRIFSLINDMVWKYDILPLDRFLLSLILRPLEDKEVHFAHLLINYLLIQLQEFKTRVNKFVSENHSQHWDQSNWHEKHKQYHEQFPENFFYEGILKANNMTPAPGSLEYLPTYFGNICLRFIPVFGIIIHRLIETKDLTL-LESLLNEYGQLFKFHDRPITYLYNTLYFYEKQLRDQNHIKKLLASVIINAQSENQPKDWASREFQEYVK-----DTNSIWSPNTQYLSNLIERFVNTILDRNPPQFASCDWRFNEFSNPSSHVLHATCVELMTLPMHGDAIGKSLIEVICKSGNANNSTFLHSDIMSWINATALILTSLPQSYLFTINQCVSDVLQNHLSKFVLTSTTSLPSF----FDFCS---NYS-MNCATYPDFIVALFHATWLHAGVGQFVQLYSFLRDTLKPLIETETQLLYVLCLYGPFIQRFQSENQQHRCLFEICSEFYLIIEQVSRNCQTPLVFVDVMSDFLYHIKYMFVGDNLRGVISNTMDNFHESLQKKLKFM-----VSPATTTPLAASGAASIKMENFGGPQQPLAATMT 1404
            ++ L+ I    +  + +  AF G  ++  E+ K ++   + +F  FW  L++E  E    I   V+F + Q    RIS+LY+ L   V+ G++  R+  E++++S+ L  E + +W L+F  V   +  +DYK VR +   +L K+   +P ++S++ ++ L   ++V+   L R + +LP+Y  + +I KLYP     PHW+ G   + FV+TFRP A++ SI G  SL+PVV +SG+  N W L+PATL+FPLKG LPY K+L +PQ  LLR+V+ Q YSRDMVC+MLGL KQ +QRC  LE  LV+L++ AME++E      +G +  LLWQHLSSQLIFF+LFQFASFPHMVL+LH+KL+ R L KGRDHLMWVLLQFISGSIQK  L+ F PVMKLF+LLYPEKE I      +  S  +FAM CIW+HL++KA+ DN      +P +LR   E L  +++ K    S     ++++LLCNAYSTN E F +P+  L+  +YG G     L     + + + +PL M LLDSLT+HAKMSLI  +  R+I++AHA      ++S+ L PALVETYSRLLVY EIE LGIKGF+SQLLP V KS AWGILHTL EMFSYR+HHIQ HYRV LL++L+ L  V  T ++QL+LC++  A+RL+    +SE+Q   +  R+  +PK +LS + EELNR  +L +ARA       T +DS+   WC+ +L+  +  TPH W+S TL+ FP  +Q F+  N  PQ        RF                 L   VE  YRK K+ + E D++T+ +       +FLC++WK+L E + +    + V+ R+  + L+ ++  F D++++E  +   + G  QL +   ++NDMVWKY+I+ LDR +L L +R  E  E    + +I  LL++  +F+ RV+ FV EN  +HW Q++WH KH  YH+++PE  ++EG+ +  +  P      YLP YFGN+CLRF+PVF I+IHR +E   ++  LE+LL+  G L+KFHDRP+TYLYNTL++YE  LRD+  +K+ L   II +  +N+P+ W   +   Y+K        + W P+  Y   LI R V+T+  ++P  F +CDWRFNEF NP++H LH TCVELM L + G  +G +L+ V+ KS           +I +W+NA  LI+T+LP+ Y   ++  +  V    +S   LTS T    +    FDF +   +YS M+C+    + +AL HA W H+ +GQ   +  FL + L P+++TE QLLYV  L GPF+QRFQ E  + RC+ EI   FY ++  V + C T L ++D + DFLYH+KYMF GD+++  +   + N   +L+ +L+F+     + PA   P A +  +     N    Q P++  +T
Sbjct:    2 ETQLQSIFEEVVKTEVIEEAFPGMFMDTPEDEKTKLISCLGAFRQFWGGLSQESHEQ--CIQWIVKFIHGQHSPKRISFLYDCLAMAVETGLLPPRLVCESLINSDTLEWERTQLWALTFKLVRKIIGGVDYKGVRDLLKVILEKILT-IPNTVSSAVVQQLLAAREVIAYILERNACLLPAYFAVTEIRKLYPEGKL-PHWLLGNLVSDFVDTFRPTARINSICGRCSLLPVVNNSGAICNSWKLDPATLRFPLKGLLPYDKDLFEPQTALLRYVLEQPYSRDMVCNMLGLNKQHKQRCPVLEDQLVDLVVYAMERSETEEKFDDGGTSQLLWQHLSSQLIFFVLFQFASFPHMVLSLHQKLAGRGLIKGRDHLMWVLLQFISGSIQKNALADFLPVMKLFDLLYPEKEYIPVPDINKPQSTHAFAMTCIWIHLNRKAQNDNSKLQIPIPHSLRLHHEFLQQSLRNK----SLQMNDYKIALLCNAYSTNSECFTLPMGALVETIYGNGIMRIPLPGTNCMASGSITPLPMNLLDSLTVHAKMSLIHSIATRVIKLAHA------KSSVALAPALVETYSRLLVYMEIESLGIKGFISQLLPTVFKSHAWGILHTLLEMFSYRMHHIQPHYRVQLLSHLHTLAAVAQTNQNQLHLCVESTALRLITALGSSEVQPQFT--RFLSDPKTVLSAESEELNRALILTLARATHVTDFFTGSDSIQGTWCKDILQTIMSFTPHNWASHTLSCFPGPLQAFFKQNNVPQE------SRFN----------------LKKNVEEEYRKWKSMSNENDIITHFSMQGS-PPLFLCLLWKMLLETDHINQIGYRVLERIGARALVAHVRTFADFLVYEFST---SAGGQQLNKCIEILNDMVWKYNIVTLDRLILCLAMRSHEGNEAQVCYFIIQLLLLKPNDFRNRVSDFVKENSPEHWLQNDWHTKHMNYHKKYPEKLYFEGLAEQVD-PPVQIQSPYLPIYFGNVCLRFLPVFDIVIHRFLELLPVSKSLETLLDHLGGLYKFHDRPVTYLYNTLHYYEMHLRDRAFLKRKLVHAIIGSLKDNRPQGWCLSD--TYLKCAMNAREENPWVPDDTYYCRLIGRLVDTMAGKSPGPFPNCDWRFNEFPNPAAHALHVTCVELMALAVSGKEVGNALLNVVLKS----QPLVPRENITAWMNAIGLIITALPEPYWIVLHDRIVSV----ISSPSLTSETEWVGYPFRLFDFTACHQSYSEMSCS----YTLALAHAVWHHSSIGQLSLIPKFLTEVLLPIVKTEFQLLYVYHLVGPFLQRFQQE--RTRCMIEIGVAFYDMLLNVDQ-CSTHLNYMDPICDFLYHMKYMFTGDSVKEQVEKIICNLKPALKLRLRFITHISKMEPAAVPPQAMNSGSPAPQSN----QVPVSLPVT 1367          
The following BLAST results are available for this feature:
BLAST of TCONS_00025173-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MED230.000e+041.68Mediator of RNA polymerase II transcription subuni... [more]
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