TCONS_00023226-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00023226-protein
Unique NameTCONS_00023226-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length432

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00023226-protein ID=TCONS_00023226-protein|Name=TCONS_00023226-protein|organism=Clytia hemisphaerica|type=polypeptide|length=432bp
MDVKTFDEKRNLIVNYLPSNLTQDEVQRLFSRIGPVSNCKLIRNFESGQS
LGYAFIEYPSENLALEAINTLDGTKMEGKTLKVSYARQSSPDIKNSNVYV
AGLPDHISENDLYTLFTPFGKIITHKLLTNSDKTSKGVGFVRYSLKSEAQ
NAIECMGGKVLDKCKTPLTVKLAIPPVSKQQNSLLASTSQINAMAGIPGV
SALRGSLRFNPLAPSNQAITHTGQVLSAISSLEQQTLSPIASPALIQLKT
TQQVIPNATTASLTPASASQAFTIYIYGLQVHHNELHLYELFAPFGAILN
VKLIRDLKKEDKPSKGYGFINFRKYEDALAAINSLNNQVLEGKVLQVSFK
NAATMGLATVQQQHQQQAILSSAGLQPSLQQQQPQFQARPHIPHHHHHHH
HQQQHHHLAAAGLPHHDSSPLFSNFHHMKYPN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_013065XLOC_013065Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00023226TCONS_00023226Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002343Hud_Sxl_RNA
IPR000504RRM_dom
IPR006548ELAD_HU_SF
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002343Paraneoplastic encephalomyelitis antigenPRINTSPR00961HUDSXLRNAcoord: 83..100
score: 59.26
coord: 116..128
score: 45.64
coord: 10..25
score: 71.25
coord: 156..173
score: 31.85
coord: 101..116
score: 35.42
coord: 67..82
score: 51.67
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 11..84
e-value: 8.3E-20
score: 81.8
coord: 97..171
e-value: 7.5E-17
score: 72.0
coord: 273..348
e-value: 1.6E-17
score: 74.2
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 12..82
e-value: 8.3E-18
score: 63.9
coord: 98..164
e-value: 3.3E-15
score: 55.6
coord: 274..345
e-value: 3.7E-16
score: 58.6
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 96..175
score: 15.63
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 272..352
score: 17.319
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 10..88
score: 18.649
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 257..351
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 9..166
NoneNo IPR availableGENE3D3.30.70.330coord: 263..409
e-value: 1.5E-21
score: 76.0
NoneNo IPR availableGENE3D3.30.70.330coord: 3..91
e-value: 6.2E-24
score: 84.1
coord: 92..184
e-value: 3.8E-19
score: 68.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 379..420
IPR006548Splicing factor ELAV/HuTIGRFAMTIGR01661TIGR01661coord: 7..353
e-value: 9.6E-87
score: 289.7

Blast
[Close]
BLAST of TCONS_00023226-protein vs. Swiss-Prot (Human)
Match: ELAV3 (ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=2 SV=3)

HSP 1 Score: 222.631 bits (566), Expect = 7.700e-69
Identity = 135/349 (38.68%), Postives = 197/349 (56.45%), Query Frame = 0 
Query:    5 TFDEKRNLIVNYLPSNLTQDEVQRLFSRIGPVSNCKLIRNFESGQSLGYAFIEYPSENLALEAINTLDGTKMEGKTLKVSYARQSSPDIKNSNVYVAGLPDHISENDLYTLFTPFGKIITHKLLTNS-DKTSKGVGFVRYSLKSEAQNAIECMGGKVLDKCKTPLTVKLAIPPVSKQQNSLLASTSQINAMAGIPGVSALRGSLRFNPLAPSNQAITHTGQVLSAISSLEQQTLSPIASPALIQLKTTQQVIPNATTASLTPASASQAFTIYIYGLQVHHNELHLYELFAPFGAILNVKLIRDLKKEDKPSKGYGFINFRKYEDALAAINSLNNQVLEGKVLQVSFKNA 352
            T D K NLIVNYLP N+TQDE + LF  IG + +CKL+R+  +GQSLGY F+ Y   N A +AINTL+G K++ KT+KVSYAR SS  I+++N+YV+GLP  +S+ ++  LF+ +G+IIT ++L +     S+GVGF+R+  + EA+ AI+ + G+       P+TVK A  P  K   +LL    Q +A      +       R + L      +     V S +S + +   SPIA   +  L               +  +A   + I++Y L    +E  L++LF PFGA+ NVK+IRD        KG+GF+    Y++A  AI SLN   L  +VLQVSFK +
Sbjct:   34 TDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNL------LNMAYGVKSPLSLIAR--FSPIAIDGMSGLAGVGL----------SGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNK--CKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTS 362
The following BLAST results are available for this feature:
BLAST of TCONS_00023226-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ELAV37.700e-6938.68ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=2... [more]
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