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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023226 ID=TCONS_00023226|Name=TCONS_00023226|organism=Clytia hemisphaerica|type=transcript|length=3089bp caagatttttgttttaaattgacTATTTTTCTCAGATTGTTAATTTTCAA GGGTTTTCAGAGGTTCACCGTGTgcttaagaaaattatgaccatctgtta tcaggttacgtTTGGCTCGTTTAGGTGAATTGTATTGGTTAACTCATAAT TGATTATTTGGGGGTTGGCCAGTTGCATTAAAAAAACTTCTTTGTCAAGG ATATAATAATTGCAGAGGTGACAGATTTAGATTTTGGGTGTTAAGTATTC TAATGTgtacaattttattttattttcattcatagtttattttaataaaa attgtcCAAACAAACAACAAATCTGGCACCTGTCGCAGTGAAGAGTTCTG CAAGATTTGCACCCTACAGCCAAACCAAAGGGCCCTCCATGGATGTGAAA ACTTTTGACGAGAAACGAAACTTAATAGTCAACTATTTACCATCAAATCT GACTCAAGATGAAGTGCAACGTTTATTCAGTCGTATCGGCCCTGTATCAA ATTGTAAATTGAttagaaattttgagtctggtcAAAGTTTGGGTTATGCT TTCATTGAATATCCCTCAGAGAATCTAGCTCTTGAAGCAATCAATACTCT AGATGGGACCAAAATGGAAGGTAAAACCTTGAAAGTCAGCTATGCACGTC AGTCTTCACCTGATATTAAAAACTCGAATGTTTATGTAGCTGGACTACCT GATCACATTTCTGAAAATGATCTCTATACACTTTTTACACCGTTCGGTAA AATCATCACACACAAACTTTTAACAAACTCTGACAAAACTTCTAAAGGTG TTGGTTTTGTTCGCTACTCTTTGAAATCAGAAGCACAGAATGCCATAGAG TGTATGGGTGGCAAGGTACTAGACAAATGCAAAACACCATTAACAGTAAA ATTAGCTATCCCACCAgtatctaaacaacaaaattctCTATTGGCATCAA CTTCGCAAATCAATGCAATGGCTGGTATCCCAGGTGTCAGTGCCTTGAGA GGTAGCCTACGTTTTAACCCTTTAGCACCATCAAACCAAGCTATCACACA TACAGGTCAAGTGTTGTCTGCTATCTCATCATTGGAGCAACAAACCTTAA GTCCAATTGCTAGCCCTGCGCTCATTCAACTCAAAACAACACAACAAGTC ATCCCCAATGCCACAACAGCGTCTCTGACACCTGCTTCTGCTTCACAAGC TTTCACTATTTATATATACGGTTTACAAGTACATCATAATGAGCTACACT TGTATGAGCTGTTCGCACCTTTTGGTGCCATCTTGAATGTTAAACTGATc cgtgatttaaaaaaagaagacaagCCAAGCAAAGGGTATGGCTTTATCAA TTTCCGTAAATACGAAGACGCCCTTGCCGCCATCAACTCCTTAAACAACC AAGTATTAGAAGGCAAAGTTTTGCAAGTTTCTTTCAAGAATGCAGCAACT ATGGGTCTTGCAACAGTCCAACAGCAACACCAACAACAAGCTATTTTATC ATCAGCTGGTCTACAACCAAGTCTACAACAACAGCAACCACAATTCCAAG CCAGGCCCCACATTCctcaccaccaccaccaccaccaccatcaACAACAG CATCATCATTTAGCAGCAGCAGGTCTTCCACATCACGATTCATCCCCGTT GTTCTCCAATTTCCACCACATGAAATATCCAAATTGAAAGTGTGACACTA ATGGTTGTTTCATTACAATAAGAAACACACAAAATACGAGACCAtgtttt tttgagatttcaTTCATGATGGTTTCAGGGTAAAGAAGtaCAATTTACAA CAAGAAAATGCATTTGAAGCGAATATTAATCTACACTGGACCAGGTACCG AAAAGACGAACATACTTCACCGTTCGTTGGCTCATGTCCTCGATACAATC AACCCTCATCATAAATTCCATGTCGACCTCATCGAGGAAGCTAGCTCCAT ATCACCAGCTTTGAAACGAGGCGATACTGAATTATTCATTCTGCCTGGAG GTCGAGATTTACCATATGTCGATCACATAAAGACTGATATTATTCGAAAC ATCAAAGATTACATCCATACAGGAGGCTCTTATCTTGGGATATGCGCTGG TGCTTATTTTTCATGCCAAGAATGTATTTTTGACAAGAATGGCCCGCTAG AAGTAGTCGGCCCGCGTGAAATGGCTCTTTTTTCGGCAGCCGGAGTCGGT CCTGTTTACCCTGGATTTAAGTACAATTCTGCTAAAGGTTCAATCATGGC TCCTTTAGAGTTCCATTCAAAATCTAACAACTTAGCCTCTTGTTTTGCGT ATTTTAACGGTGGAGGGGCATTCCAGGCTAATATTGAAGACACTGATCCT AACTACGAAATTATATCTTCTTACAAAGACTTGAGAAACAAAGCTGCTAT TGTGTATGGGTCAAAAGGCCTTGGGAAGGTCTTGCTGTCTTTTGTTCATC CCGAGATGAGTTATAAATTCCTTGATAAAGATAACTACACAGAATTGCAA TGGAATGATATGGTTGCTAAGGATGATGGGCAATTTCAACTTTGGAAATG GATTATTAATAAGCttgtttcttttgattaaagGGACCTTCAATTTACCT CttaattgaaaattgtttgaataatGCTCCCACATTGAAATCTTCTATTA CATTTAGTGTACTATGAAAtcctttttaaaatatatttcctgaaaaaaag aaagatcattGAGTTTCTCAGGGTACTGTGATCCATGTTATACTTATAGT TTAAAAAACATCTCAATATCGTCCTATGATACTGCTGTTAGTATTTGTTA CCCGCAGTTAGTCTAGcgagctagacgactaattcagacatagtagaaat aaagcaaaaggtAATGGAGGtaaaacaattttagtttataccaCGAATTA AATCctgtaacaataatcgtattatcatataacacctataCTACActgta ttacatgcattatagaCGACTTCAGTCTAAACTGAAGTCTGATCAATTCT AATTTTTGGTATCGGCTTCTTCTTAGTCTTGGATATTAAACATTTTGACA TTCTttaattgtttttgttattcaaaaaaattagttcTG Run BLAST on NCBI protein sequence of TCONS_00023226-protein >TCONS_00023226-protein ID=TCONS_00023226-protein|Name=TCONS_00023226-protein|organism=Clytia hemisphaerica|type=polypeptide|length=432bp
MDVKTFDEKRNLIVNYLPSNLTQDEVQRLFSRIGPVSNCKLIRNFESGQS LGYAFIEYPSENLALEAINTLDGTKMEGKTLKVSYARQSSPDIKNSNVYV AGLPDHISENDLYTLFTPFGKIITHKLLTNSDKTSKGVGFVRYSLKSEAQ NAIECMGGKVLDKCKTPLTVKLAIPPVSKQQNSLLASTSQINAMAGIPGV SALRGSLRFNPLAPSNQAITHTGQVLSAISSLEQQTLSPIASPALIQLKT TQQVIPNATTASLTPASASQAFTIYIYGLQVHHNELHLYELFAPFGAILN VKLIRDLKKEDKPSKGYGFINFRKYEDALAAINSLNNQVLEGKVLQVSFK NAATMGLATVQQQHQQQAILSSAGLQPSLQQQQPQFQARPHIPHHHHHHH HQQQHHHLAAAGLPHHDSSPLFSNFHHMKYPN Run BLAST on NCBI transcript from alignment at sc0000447:130927..135272- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023226 ID=TCONS_00023226|Name=TCONS_00023226|organism=Clytia hemisphaerica|type=transcript|length=4346bp|location=Sequence derived from alignment at sc0000447:130927..135272- (Clytia hemisphaerica) CAAGATTTTTGTTTTAAATTGACTATTTTTCTCAGATTGTTAATTTTCAA
GGGTTTTCAGAGGTTCACCGTGTGCTTAAGAAAATTATGACCATCTGTTA
TCAGGTTACGTTTGGCTCGTTTAGGTGAATTGTATTGGTTAACTCATAAT
TGATTATTTGGGGGTTGGCCAGTTGCATTAAAAAAACTTCTTTGTCAAGG
ATATAATAATTGCAGAGGTGACAGATTTAGATTTTGGGTGTTAAGTATTC
TAATGTGTACAATTTTATTTTATTTTCATTCATAGTTTATTTTAATAAAA
ATTGTCCAAACAAACAACAAATCTGGCACCTGTCGCAGTGAAGAGTTCTG
CAAGATTTGCACCCTACAGCCAAACCAAAGGGCCCTCCATGGATGTGAAA
ACTTTTGACGAGAAACGAAACTTAATAGTCAACTATTTACCATCAAATCT
GACTCAAGATGAAGTGCAACGTTTATTCAGTCGTATCGGCCCTGTATCAA
ATTGTAAATTGATTAGAAATTTTGAGTCTGGTCAAAGTTTGGGTTATGCT
TTCATTGAATATCCCTCAGAGAATCTAGCTCTTGAAGCAATCAATACTCT
AGATGGGACCAAAATGGAAGGTAAAACCTTGAAAGTCAGCTATGCACGTC
AGTCTTCACCTGATATTAAAAACTCGAATGTTTATGTAGCTGGACTACCT
GATCACATTTCTGAAAATGATCTCTATACACTTTTTACACCGTTCGGTAA
AATCATCACACACAAACTTTTAACAAACTCTGACAAAACTTCTAAAGGTG
TTGGTTTTGTTCGCTACTCTTTGAAATCAGAAGCACAGAATGCCATAGAG
TGTATGGGTGGCAAGGTACTAGACAAATGCAAAACACCATTAACAGTAAA
ATTAGCTATCCCACCAGTATCTAAACAACAAAATTCTCTATTGGCATCAA
CTTCGCAAATCAATGCAATGGCTGGTATCCCAGGTGTCAGTGCCTTGAGA
GGTAGCCTACGTTTTAACCCTTTAGCACCATCAAACCAAGCTATCACACA
TACAGGTCAAGTGTTGTCTGCTATCTCATCATTGGAGCAACAAACCTTAA
GTCCAATTGCTAGCCCTGCGCTCATTCAACTCAAAACAACACAACAAGTC
ATCCCCAATGCCACAACAGCGTCTCTGACACCTGCTTCTGCTTCACAAGC
TTTCACTATTTATATATACGGTTTACAAGTACATCATAATGAGCTACACT
TGTATGAGCTGTTCGCACCTTTTGGTGCCATCTTGAATGTTAAACTGATC
CGTGATTTAAAAAAAGAAGACAAGCCAAGCAAAGGGTATGGCTTTATCAA
TTTCCGTAAATACGAAGACGCCCTTGCCGCCATCAACTCCTTAAACAACC
AAGTATTAGAAGGCAAAGTTTTGCAAGTTTCTTTCAAGAATGCAGCAACT
ATGGGTCTTGCAACAGTCCAACAGCAACACCAACAACAAGCTATTTTATC
ATCAGCTGGTCTACAACCAAGTCTACAACAACAGCAACCACAATTCCAAG
CCAGGCCCCACATTCCTCACCACCACCACCACCACCACCATCAACAACAG
CATCATCATTTAGCAGCAGCAGGTCTTCCACATCACGATTCATCCCCGTT
GTTCTCCAATTTCCACCACATGAAATATCCAAATTGAAAGTGTGACACTA
ATGGTTGTTTCATTACAATAAGAAACACACAAAATACGAGACCATGTTTT
TTTGAGATTTCATTCATGATGGTTTCAGGGTAAAGAAGGTATGATACTAT
ACATTGAGGGACTTTTGGAGTAAGGTGTAACTGTTACTAAACTTATACTT
TGATTTTTACAAATCGTTACGAAGCAAGGTTTTGCTTTTATAAAGTTATA
CTTTAAAAGTTTGAACACACGAGATAATTCATTTATTTACTTACTTCATA
TTAACATTATGATATAATTTTCTTGAGTTATTATTTTTTAGATAGTAGAT
AATTTTTACTTATTGTTACATTTAGGTATTGTAGGTATTGTAACTGGTTC
TAAGTTAACTTTTATTATTCTCTTGATTCGTTATATATTTTTCAGGCAAT
CGACTAAAAATGATGATGAAAGATGAAAATTTGCTTAAATTGATTACTTC
GTTTTTCTATGTATTATTGATATTAATTACTTGCACTTCCATGTTAAAGA
TATGTTTTTGCTCTGCATAAGCGCAGATTCGATAAGAGATTAATGTAATT
TGCTGCATTGTTTTGTTTCTGTTCGATAGGTTTGGCCAAACGAAATCATG
TAATAAACAAAAAAAACTTTTTACCATCTTCCTCTTTGTGGATAATCAAT
TTATGATGTTAATTACATTTTTCCTTACTTTTATTACTAATTATTATTTG
GTCCATTTTATTTCATGCTATTGTTAGTTATTATTAGCTTCTTGTAGTAT
TGGCGTGTGTGTATTATTTTTTCCTTATCACATGTTTATTTCTGAAATAG
AAAATTTTGATTTTACATACTGACTTTATTCCATTTTGTTTTTTTACTTC
ATATTATTTTTGGTATTCGAAGAAAGAACCTCATTCTCTCATTTTTTATC
TTGCCCATTACAGTGTATGAAATATTTTAAAGCTATCACTGATTTATTTA
TGACTTGTGCCCCTCTAATAGTTTAATTCTACTGGTATATTATCTTCATT
ATCTTAAATTTTTGGGATTTTATATTTTAGTGCACTTGTATCAAAATTAA
TTTCATTTTCTTATCCATCCCTACAATGTAGTAGTGTCGCACCAAGATCA
CTTTATCTTTAATTTGAATTTTCCTTTTTAAATTTTCGTCTTCTAATTAT
ACTCAATTAATTTTTTGATGAAGCTATAATTATTGTATCCTTTATGAGTG
TATTATAAAGGGTTGTTATTTGATAAGGATACTATCCAGACAAGTTACTA
AAAGGATATGATTTGTTTTGCGTTTTGCTATGATATTGACTTTGAACGTT
TGATTTATTCATTTTTTTTTCATTTTTATTTCATTTTCATTTTAGTACAA
TTTACAACAAGAAAATGCATTTGAAGCGAATATTAATCTACACTGGACCA
GGTACCGAAAAGACGAACATACTTCACCGTTCGTTGGCTCATGTCCTCGA
TACAATCAACCCTCATCATAAATTCCATGTCGACCTCATCGAGGAAGCTA
GCTCCATATCACCAGCTTTGAAACGAGGCGATACTGAATTATTCATTCTG
CCTGGAGGTCGAGATTTACCATATGTCGATCACATAAAGACTGATATTAT
TCGAAACATCAAAGATTACATCCATACAGGAGGCTCTTATCTTGGGATAT
GCGCTGGTGCTTATTTTTCATGCCAAGAATGTATTTTTGACAAGAATGGC
CCGCTAGAAGTAGTCGGCCCGCGTGAAATGGCTCTTTTTTCGGCAGCCGG
AGTCGGTCCTGTTTACCCTGGATTTAAGTACAATTCTGCTAAAGGTTCAA
TCATGGCTCCTTTAGAGTTCCATTCAAAATCTAACAACTTAGCCTCTTGT
TTTGCGTATTTTAACGGTGGAGGGGCATTCCAGGCTAATATTGAAGACAC
TGATCCTAACTACGAAATTATATCTTCTTACAAAGACTTGAGAAACAAAG
CTGCTATTGTGTATGGGTCAAAAGGCCTTGGGAAGGTCTTGCTGTCTTTT
GTTCATCCCGAGATGAGTTATAAATTCCTTGATAAAGATAACTACACAGA
ATTGCAATGGAATGATATGGTTGCTAAGGATGATGGGCAATTTCAACTTT
GGAAATGGATTATTAATAAGCTTGTTTCTTTTGATTAAAGGGACCTTCAA
TTTACCTCTTAATTGAAAATTGTTTGAATAATGCTCCCACATTGAAATCT
TCTATTACATTTAGTGTACTATGAAATCCTTTTTAAAATATATTTCCTGA
AAAAAAGAAAGATCATTGAGTTTCTCAGGGTACTGTGATCCATGTTATAC
TTATAGTTTAAAAAACATCTCAATATCGTCCTATGATACTGCTGTTAGTA
TTTGTTACCCGCAGTTAGTCTAGCGAGCTAGACGACTAATTCAGACATAG
TAGAAATAAAGCAAAAGGTAATGGAGGTAAAACAATTTTAGTTTATACCA
CGAATTAAATCCTGTAACAATAATCGTATTATCATATAACACCTATACTA
CACTGTATTACATGCATTATAGACGACTTCAGTCTAAACTGAAGTCTGAT
CAATTCTAATTTTTGGTATCGGCTTCTTCTTAGTCTTGGATATTAAACAT
TTTGACATTCTTTAATTGTTTTTGTTATTCAAAAAAATTAGTTCTG Coding sequence (CDS) from alignment at sc0000447:130927..135272- >TCONS_00023226 ID=TCONS_00023226|Name=TCONS_00023226|organism=Clytia hemisphaerica|type=CDS|length=1299bp|location=Sequence derived from alignment at sc0000447:130927..135272- (Clytia hemisphaerica) ATGGATGTGAAAACTTTTGACGAGAAACGAAACTTAATAGTCAACTATTT ACCATCAAATCTGACTCAAGATGAAGTGCAACGTTTATTCAGTCGTATCG GCCCTGTATCAAATTGTAAATTGATTAGAAATTTTGAGTCTGGTCAAAGT TTGGGTTATGCTTTCATTGAATATCCCTCAGAGAATCTAGCTCTTGAAGC AATCAATACTCTAGATGGGACCAAAATGGAAGGTAAAACCTTGAAAGTCA GCTATGCACGTCAGTCTTCACCTGATATTAAAAACTCGAATGTTTATGTA GCTGGACTACCTGATCACATTTCTGAAAATGATCTCTATACACTTTTTAC ACCGTTCGGTAAAATCATCACACACAAACTTTTAACAAACTCTGACAAAA CTTCTAAAGGTGTTGGTTTTGTTCGCTACTCTTTGAAATCAGAAGCACAG AATGCCATAGAGTGTATGGGTGGCAAGGTACTAGACAAATGCAAAACACC ATTAACAGTAAAATTAGCTATCCCACCAGTATCTAAACAACAAAATTCTC TATTGGCATCAACTTCGCAAATCAATGCAATGGCTGGTATCCCAGGTGTC AGTGCCTTGAGAGGTAGCCTACGTTTTAACCCTTTAGCACCATCAAACCA AGCTATCACACATACAGGTCAAGTGTTGTCTGCTATCTCATCATTGGAGC AACAAACCTTAAGTCCAATTGCTAGCCCTGCGCTCATTCAACTCAAAACA ACACAACAAGTCATCCCCAATGCCACAACAGCGTCTCTGACACCTGCTTC TGCTTCACAAGCTTTCACTATTTATATATACGGTTTACAAGTACATCATA ATGAGCTACACTTGTATGAGCTGTTCGCACCTTTTGGTGCCATCTTGAAT GTTAAACTGATCCGTGATTTAAAAAAAGAAGACAAGCCAAGCAAAGGGTA TGGCTTTATCAATTTCCGTAAATACGAAGACGCCCTTGCCGCCATCAACT CCTTAAACAACCAAGTATTAGAAGGCAAAGTTTTGCAAGTTTCTTTCAAG AATGCAGCAACTATGGGTCTTGCAACAGTCCAACAGCAACACCAACAACA AGCTATTTTATCATCAGCTGGTCTACAACCAAGTCTACAACAACAGCAAC CACAATTCCAAGCCAGGCCCCACATTCCTCACCACCACCACCACCACCAC CATCAACAACAGCATCATCATTTAGCAGCAGCAGGTCTTCCACATCACGA TTCATCCCCGTTGTTCTCCAATTTCCACCACATGAAATATCCAAATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
| TCONS_00023226-exon-sc0000447-1575043694:133485..135272 | TCONS_00023226-exon-sc0000447-1575043694:133485..135272 | Clytia hemisphaerica | exon |
| TCONS_00023226-exon-sc0000447-1575043694:130927..132227 | TCONS_00023226-exon-sc0000447-1575043694:130927..132227 | Clytia hemisphaerica | exon |
| TCONS_00023226-exon-sc0000447-1510915933:133485..135272 | TCONS_00023226-exon-sc0000447-1510915933:133485..135272 | Clytia hemisphaerica | exon |
| TCONS_00023226-exon-sc0000447-1510915933:130927..132227 | TCONS_00023226-exon-sc0000447-1510915933:130927..132227 | Clytia hemisphaerica | exon |
| TCONS_00023226-exon-sc0000447-1491911889:133485..135272 | TCONS_00023226-exon-sc0000447-1491911889:133485..135272 | Clytia hemisphaerica | exon |
| TCONS_00023226-exon-sc0000447-1491911889:130927..132227 | TCONS_00023226-exon-sc0000447-1491911889:130927..132227 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| sc0000447 | supercontig | sc0000447:130927..135272 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
| GO:0003723 | RNA binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0003723 |
RNA binding |
Blast
BLAST of TCONS_00023226 vs. Swiss-Prot (Human)
Match: ELAV3 (ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=2 SV=3) HSP 1 Score: 221.09 bits (562), Expect = 1.602e-63 Identity = 135/349 (38.68%), Postives = 196/349 (56.16%), Query Frame = 2
Query: 401 TFDEKRNLIVNYLPSNLTQDEVQRLFSRIGPVSNCKLIRNFESGQSLGYAFIEYPSENLALEAINTLDGTKMEGKTLKVSYARQSSPDIKNSNVYVAGLPDHISENDLYTLFTPFGKIITHKLLTNS-DKTSKGVGFVRYSLKSEAQNAIECMGGKVLDKCKTPLTVKLAIPPVSKQQNSLLASTSQINAMAGIPGVSALRGSLRFNPLAPSNQAITHTGQVLSAISSLEQQTLSPIASPALIQLKTTQQVIPNXXXXXXXXXXXXXXFTIYIYGLQVHHNELHLYELFAPFGAILNVKLIRDLKKEDKPSKGYGFINFRKYEDALAAINSLNNQVLEGKVLQVSFKNA 1444
T D K NLIVNYLP N+TQDE + LF IG + +CKL+R+ +GQSLGY F+ Y N A +AINTL+G K++ KT+KVSYAR SS I+++N+YV+GLP +S+ ++ LF+ +G+IIT ++L + S+GVGF+R+ + EA+ AI+ + G+ P+TVK A P K +LL Q +A + R + L + V S +S + + SPIA + L +A + I++Y L +E L++LF PFGA+ NVK+IRD KG+GF+ Y++A AI SLN L +VLQVSFK +
Sbjct: 34 TDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNL------LNMAYGVKSPLSLIAR--FSPIAIDGMSGLAGVGLS----------GGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNK--CKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTS 362
The following BLAST results are available for this feature:
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