TCONS_00022572-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00022572-protein
Unique NameTCONS_00022572-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length254

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00022572-protein ID=TCONS_00022572-protein|Name=TCONS_00022572-protein|organism=Clytia hemisphaerica|type=polypeptide|length=254bp
MVEESIKVKELNDNFTCIICNGYLIRPVAITECLHYFCRSCIVKYLETTS
EYKCPYCETLIHETNPWELLREDKKLEYIIYQLVPGLAQNEKKRRKLFYS
RRGMVDPDENNTDSNLTLAIMDSSSKKEEDDEKKNEKEDEKPPVNAPKPK
KLDSSQIGLHLNFLEPEEPPQQPKQTSFRPLDKPYLRTSSHITIAHLKKF
LQKKLEHSSKCDVDILCNGELMGRHHTLEFIYMTRWRYKEGVLKLDYRPK
VDIS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_012659XLOC_012659Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00022572TCONS_00022572Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR032443RAWUL
IPR018957Znf_C3HC4_RING-type
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 17..57
e-value: 2.5E-5
score: 33.7
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 17..58
score: 12.12
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 16..57
e-value: 1.72158E-9
score: 50.9072
IPR032443RAWUL domainPFAMPF16207RAWULcoord: 184..248
e-value: 6.1E-14
score: 52.3
IPR018957Zinc finger, C3HC4 RING-typePFAMPF00097zf-C3HC4coord: 17..57
e-value: 2.2E-9
score: 37.0
NoneNo IPR availableGENE3D3.10.20.90coord: 151..250
e-value: 1.2E-22
score: 79.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 108..153
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 10..66
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 1..146
e-value: 3.2E-19
score: 68.3
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 33..42

Blast
[Close]
BLAST of TCONS_00022572-protein vs. Swiss-Prot (Human)
Match: PCGF3 (Polycomb group RING finger protein 3 OS=Homo sapiens GN=PCGF3 PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.828e-54
Identity = 91/253 (35.97%), Postives = 147/253 (58.10%), Query Frame = 0 
Query:    1 MVEESIKVKELNDNFTCIICNGYLIRPVAITECLHYFCRSCIVKYLETTSEYKCPYCETLIHETNPWELLREDKKLEYIIYQLVPGLAQNEKKRRKLFYSRRGMVDPDENNTDSNLTLAIMDSSSKKEEDDEKKNEKEDEKPPVNAPKPKKLDSSQIGLHLNFLEPEEPPQQPKQTSFRPLDKPYLRTSSHITIAHLKKFLQKKLEHSSKCDVDILCNGELMGRHHTLEFIYMTRWRYKEGVLKLDYRPKVDI 253
            M+   IK+ ++N + TC +C+GYLI    +TECLH FCRSC+VKYLE  +   CP C  +IH+++P + +  D+ ++ I+Y+LVPGL + E ++++ FY + GM  P +   ++      +DS    E   +  + KE  +              Q+ + L          +   +  R L + ++R S+  T+ HLKKF+ KKL  SS  ++DILCN E++G+ HTL+F+ +TRWR+K+  L L YRPK+D+
Sbjct:    1 MLTRKIKLWDINAHITCRLCSGYLIDATTVTECLHTFCRSCLVKYLEENNT--CPTCRIVIHQSHPLQYIGHDRTMQDIVYKLVPGLQEAEMRKQREFYHKLGMEVPGDIKGETCSAKQHLDSHRNGETKADDSSNKEAAEEKPEEDNDYHRSDEQVSICL----------ECNSSKLRGLKRKWIRCSAQATVLHLKKFIAKKLNLSSFNELDILCNEEILGKDHTLKFVVVTRWRFKKAPLLLHYRPKMDL 241
The following BLAST results are available for this feature:
BLAST of TCONS_00022572-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PCGF34.828e-5435.97Polycomb group RING finger protein 3 OS=Homo sapie... [more]
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