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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022572 ID=TCONS_00022572|Name=TCONS_00022572|organism=Clytia hemisphaerica|type=transcript|length=3796bp
gcatatttttgatttcttgaaatttagatCAAGGAATATTCCTATAAAAC
ATCtaaacaatcaaaattcaaacaaGCTAAACCTGAATCACGTCAGGTCA
AGATATAATTATTCTTTATTCTAGATGCGGATATTTAAATGGTATTATTT
TATACAATAATTGGTAAATTCTTGCTATAAtaagtttttcaaattcttca
gGAAAAACATAACAAATCTAAAATGGTTGAAGAAAGTATTAAAGTCAAAG
AATTGAATGATAATTTCACTTGTATAATATGCAATGGTTACTTGATAAGA
CCTGTGGCTATTACtgagtgtttacattatttttgCCGGAGCTGTATTGT
CAAGTATTTGGAAACAACTTCAGAATACAAATGCCCATACTGTGAGACAT
TGATACATGAAACTAATCCGTGGGAGCTGTTACGTGAAGACAAAAAACTT
GAATATATAATTTATCAACTTGTACCAGGTCTGGCGCAAAATGAGAAGAA
AAGGCGTAAATTATTTTATTCGCGACGTGGCATGGTGGACCCTGACGAGA
ATAACACAGATTCAAATTTAACTTTAGCCATAATGGATTCTAGTTCTAAA
AAGGAAGAAGAtgacgaaaagaaaaatgaaaaagaggaTGAAAAGCCACC
TGTGAATGCACCTAAACCCAAAAAATTAGATTCATCACAAATTGGTTTAC
ATTTGAATTTTCTTGAACCAGAGGAACCACCTcaacaaccaaaacaaaca
tCATTCAGACCATTAGATAAACCTTATTTGAGGACTTCTTCGCATATCAC
TATTGCCCATTTAAAGAAATTCTTACAAAAGAAGCTGGAGCATTCTTCGA
AATGTGATGTTGATATTTTATGTAATGGAGAGTTGATGGGACGACATCAC
ACTTTGGAATTCATTTATATGACCAGGTGGCGCTATAAAGAGGGTGTTCT
GAAGTTGGACTATAGACCAAAAGTTGATATCAGTTGAAAGttgatatttc
aaattatattttataaaataatttcaagcTTTTTTGGAGAGGGTTTGATG
TACTTGTTAACAAAAATTGAGCTCCTCTGGATTACTTTAGCTCTACATTG
CTCAAATTAAAGACTTTGTTGCTGCAATCACATACTCTCTGAAGGAGTTT
TctgacatttttgttttgtttggctCTCGTTCAAACTTTATCATCCCTGT
CCTGTCAAAATCAACTCCACTCCACTCCACAGTAAAATTTTAGGCAAATC
AGAGCTTTTTTTCTATGATTTGTCTCTGTTGTATTGAAATTATGTTATCA
TAACTCTATCTTTCATGTATACCACAAATTTTTTAAAGCCTtatattctc
aactttttgataagcttaaaatgttcataaacagtttttatttttcactt
ttgtgcaattttctaagaaattggatgtCTTAGAGCATGTTCTTGATATA
TTGGCAATCAAGGCCCTGTGCTCTTACATGAAATTACAAATTTTTATTGT
AGGTACCTCTCATACCAAGCACTTCCCGCTCTCCTCTTATTAGCCTCATT
ACGTGTAAGTaattgttttttaattattatatAATAATGTGCTAATAAGG
CTCTTAATGAATCTGCTTTGCTGATCTGATTTGAAACAATAATTTGTGAT
TATAAAACGACTCCACTTAAAGTGATTAGTTCATCGTTATTAAGAGCCTT
TGGCTACATTTTCTTGTTAAAAAACGACATTATTATGCACTTAAGATAAa
gacagacattgtgacgtgcTGTGGCACTCATAGGGTTCGGTCTTGCGTGA
Acatcgctctcccagtgtcgttcgagtgtctgtcagcgctgtgattccta
ctccttcgtgggtaggacccattctgaatgcattcggagggctcatatca
tatATATCTACTTAAGATAAAGTTACTAtttaatgaaagttttttttata
ttcatatTTCTAGAgATTATAAAAgacaaaattgatgaaaaaaataacga
gaaGACATGAcaaaataaagttaaaattaCGTCATTATGAGTTGGATCCC
CTTTCGAAAACAGCCTAAAAAGCCGGCAACCGAACTGGTAGCTGACAATG
AGTTTGACACACAGGTTGAAAAATTCAACAATACAGAAGCCAATACGCGT
AAAATGTATAAAGATATGAAAAGATATGTAGAACAGAATGCTAATCTAGT
TAAAACACATCAAAAGTTTGGTCAAGATATTAAATCTGTTGGTAAGATTG
GTGGGCAGAACGACCGTGAGCTGAATGAGGGATTGGAAAGTTTGCAACAA
GCTATGATCAGACAATGTGACCACCAGATCGAATTGAATCATAACTTGAG
GAAATTATTTATCGAACCGATGAAAAGTTTTAACACCCATTTTGATAAAG
TGAATAGCTCTATCAAAAGACGTGAACAAAGCTTACAGGATTATGCTAAA
TATCAAAGTCGCCAggagaaatataaacaaaaagaaaatgtagCTTTGTC
TGGCAAGTTTGATGCTAATGAACGCTACCTTGCATTAGCTAAAGCTGATT
TTGAGAGACGAAATGCTAAATTGCTGGATACTCTTCCACAATTTTACGAG
CATCAATTATCTTATTTTGAACCTTGTTTTGAAGGTGTTGTGAAGTCACA
TTACACGAATGTTAAGAATTCAAGAGATTTATATGAAGAGTTGGGTAACA
AGCTAGATTGTCCCTTGGAACAATGGAGTGAAGCACAATATGAAGCAGAA
ACAAAGAATCGGTTGACTGAATTGAAGAATTTATCTATTGTTAAGTGAAA
GTGGAGAAAAGCCATGATTGgggaaattttgttttaaaaactaGAAATTA
CAAAAGATCAAAACTTTATCTGTTGTCAAATAAAGGTGGAGAAAAGCCAT
GAAATTGGGAATattttttggctgtttttttttaatgtccatgaaagttt
gaattttaCTTCTGGCTGAATTGAAAACTTTATCTGATTGTCAAGTGGTA
TGGAGAAACGCGATAATTTTTCCATAACTGTTACACAGTTATCCTTTTTC
CTGATGGTTGCAGAGCAAGTTACTATCGTGGAATGATGTATGAAAAAAGC
tgttttggaaatattttttgctcGTTTTTAATGTTATTATATTCTACTGA
CaatcttaaaaattgaaatcattgtCAATCGTTAAGAAACAAACGAACGT
ATatacacaaaaaaattaaagtgaatttttgatttggtcttcattttttg
taattctGAACCTTTTCCTTTCGATCTGCTTCATCTGATAAAATCTGATG
AGGTGATTAAGGTATGAGGtatattaaaaattttacttaaTATGTGAATG
GTTGATATAAACAGGGACTAAAATAATGTATTAAAGTATATGTTTTAATT
ACTACGATGGCTCTttgatcagggggggggggggctaaaatcTCTGACAT
GTATCATGTATTGTATTACAACTATAAACTTGAaacttaaaagaagaaat
tctgTTTAAGGACCAATAAAAAAGCTACAATATTTGAATGATTTTTCATG
TTAACCAAAAATGAAAGGTTATTTTGGCAAGGCTGGTAAAGATGATAAAA
AATTTGGTAACATGAGAAAATATCGGATTATTTTCAActaaaacttcaaa
tttcaaGAGTCTTGCTCTATCTAACTGTCACTGTTctgtttttcctattt
tttcctaaattgtaaataaaaattgttttttatatccatgaatttcataa
gaatattgTAGAACATTTTCTAGATTTAATGCGCTGTAAATAATTA Run BLAST on NCBI protein sequence of TCONS_00022572-protein >TCONS_00022572-protein ID=TCONS_00022572-protein|Name=TCONS_00022572-protein|organism=Clytia hemisphaerica|type=polypeptide|length=254bp
MVEESIKVKELNDNFTCIICNGYLIRPVAITECLHYFCRSCIVKYLETTS
EYKCPYCETLIHETNPWELLREDKKLEYIIYQLVPGLAQNEKKRRKLFYS
RRGMVDPDENNTDSNLTLAIMDSSSKKEEDDEKKNEKEDEKPPVNAPKPK
KLDSSQIGLHLNFLEPEEPPQQPKQTSFRPLDKPYLRTSSHITIAHLKKF
LQKKLEHSSKCDVDILCNGELMGRHHTLEFIYMTRWRYKEGVLKLDYRPK
VDIS Run BLAST on NCBI transcript from alignment at sc0000427:65938..70005- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022572 ID=TCONS_00022572|Name=TCONS_00022572|organism=Clytia hemisphaerica|type=transcript|length=4068bp|location=Sequence derived from alignment at sc0000427:65938..70005- (Clytia hemisphaerica)
GCATATTTTTGATTTCTTGAAATTTAGATCAAGGAATATTCCTATAAAAC
ATCTAAACAATCAAAATTCAAACAAGCTAAACCTGAATCACGTCAGGTCA
AGATATAATTATTCTTTATTCTAGATGCGGATATTTAAATGGTATTATTT
TATACAATAATTGGTAAATTCTTGCTATAATAAGTTTTTCAAATTCTTCA
GGAAAAACATAACAAATCTAAAATGGTTGAAGAAAGTATTAAAGTCAAAG
AATTGAATGATAATTTCACTTGTATAATATGCAATGGTTACTTGATAAGA
CCTGTGGCTATTACTGAGTGTTTACATTATTTTTGCCGGAGCTGTATTGT
CAAGTATTTGGAAACAACTTCAGAATACAAATGCCCATACTGTGAGACAT
TGATACATGAAACTAATCCGTGGGAGCTGTTACGTGAAGACAAAAAACTT
GAATATATAATTTATCAACTTGTACCAGGTCTGGCGCAAAATGAGAAGAA
AAGGCGTAAATTATTTTATTCGCGACGTGGCATGGTGGACCCTGACGAGA
ATAACACAGATTCAAATTTAACTTTAGCCATAATGGATTCTAGTTCTAAA
AAGGAAGAAGATGACGAAAAGAAAAATGAAAAAGAGGATGAAAAGCCACC
TGTGAATGCACCTAAACCCAAAAAATTAGATTCATCACAAATTGGTTTAC
ATTTGAATTTTCTTGAACCAGAGGAACCACCTCAACAACCAAAACAAACA
TCATTCAGACCATTAGATAAACCTTATTTGAGGACTTCTTCGCATATCAC
TATTGCCCATTTAAAGAAATTCTTACAAAAGAAGCTGGAGCATTCTTCGA
AATGTGATGTTGATATTTTATGTAATGGAGAGTTGATGGGACGACATCAC
ACTTTGGAATTCATTTATATGACCAGGTGGCGCTATAAAGAGGGTGTTCT
GAAGTTGGACTATAGACCAAAAGTTGATATCAGTTGAAAGTTGATATTTC
AAATTATATTTTATAAAATAATTTCAAGCTTTTTTGGAGAGGGTTTGATG
TACTTGTTAACAAAAATTGAGCTCCTCTGGATTACTTTAGCTCTACATTG
CTCAAATTAAAGACTTTGTTGCTGCAATCACATACTCTCTGAAGGAGTTT
TCTGACATTTTTGTTTTGTTTGGCTCTCGTTCAAACTTTATCATCCCTGT
CCTGTCAAAATCAACTCCACTCCACTCCACAGTAAAATTTTAGGCAAATC
AGAGCTTTTTTTCTATGATTTGTCTCTGTTGTATTGAAATTATGTTATCA
TAACTCTATCTTTCATGTATACCACAAATTTTTTAAAGCCTTATATTCTC
AACTTTTTGATAAGCTTAAAATGTTCATAAACAGTTTTTATTTTTCACTT
TTGTGCAATTTTCTAAGAAATTGGATGTCTTAGAGCATGTTCTTGATATA
TTGGCAATCAAGGCCCTGTGCTCTTACATGAAATTACAAATTTTTATTGT
AGGTACCTCTCATACCAAGCACTTCCCGCTCTCCTCTTATTAGCCTCATT
ACGTGTAAGTAATTGTTTTTTAATTATTATATAATAATGTGCTAATAAGG
CTCTTAATGAATCTGCTTTGCTGATCTGATTTGAAACAATAATTTGTGAT
TATAAAACGACTCCACTTAAAGTGATTAGTTCATCGTTATTAAGAGCCTT
TGGCTACATTTTCTTGTTAAAAAACGACATTATTATGCACTTAAGATAAA
GACAGACATTGTGACGTGCTGTGGCACTCATAGGGTTCGGTCTTGCGTGA
ACATCGCTCTCCCAGTGTCGTTCGAGTGTCTGTCAGCGCTGTGATTCCTA
CTCCTTCGTGGGTAGGACCCATTCTGAATGCATTCGGAGGGCTCATATCA
TATATATCTACTTAAGATAAAGTTACTATTTAATGAAAGTTTTTTTTATA
TTCATATTTCTAGAGGTATTTTTTTGTTCATTTTTTTATCCTTGAGACTT
TTTATGTAGATAATTATTCATTGTTATCTTTCTTATTATTGGAATAAGAA
AAGGAGAATGTTTGGTATCTTTTGTTTTTTTAATGTATCTTTAAACATTT
TTCCTAATACTATAAGTTGATTTTCAGGCCTTTTTTTTCATATTTGTATG
ATCTGACTCTGAGTTCTCATTTACAAGTTTTCAGGATCTCTTTCCTATAG
CTCATTTTTGATAACTTTTTTTCAATCTCTTTTCCAGATTATAAAAGACA
AAATTGATGAAAAAAATAACGAGAAGACATGACAAAATAAAGTTAAAATT
ACGTCATTATGAGTTGGATCCCCTTTCGAAAACAGCCTAAAAAGCCGGCA
ACCGAACTGGTAGCTGACAATGAGTTTGACACACAGGTTGAAAAATTCAA
CAATACAGAAGCCAATACGCGTAAAATGTATAAAGATATGAAAAGATATG
TAGAACAGAATGCTAATCTAGTTAAAACACATCAAAAGTTTGGTCAAGAT
ATTAAATCTGTTGGTAAGATTGGTGGGCAGAACGACCGTGAGCTGAATGA
GGGATTGGAAAGTTTGCAACAAGCTATGATCAGACAATGTGACCACCAGA
TCGAATTGAATCATAACTTGAGGAAATTATTTATCGAACCGATGAAAAGT
TTTAACACCCATTTTGATAAAGTGAATAGCTCTATCAAAAGACGTGAACA
AAGCTTACAGGATTATGCTAAATATCAAAGTCGCCAGGAGAAATATAAAC
AAAAAGAAAATGTAGCTTTGTCTGGCAAGTTTGATGCTAATGAACGCTAC
CTTGCATTAGCTAAAGCTGATTTTGAGAGACGAAATGCTAAATTGCTGGA
TACTCTTCCACAATTTTACGAGCATCAATTATCTTATTTTGAACCTTGTT
TTGAAGGTGTTGTGAAGTCACATTACACGAATGTTAAGAATTCAAGAGAT
TTATATGAAGAGTTGGGTAACAAGCTAGATTGTCCCTTGGAACAATGGAG
TGAAGCACAATATGAAGCAGAAACAAAGAATCGGTTGACTGAATTGAAGA
ATTTATCTATTGTTAAGTGAAAGTGGAGAAAAGCCATGATTGGGGAAATT
TTGTTTTAAAAACTAGAAATTACAAAAGATCAAAACTTTATCTGTTGTCA
AATAAAGGTGGAGAAAAGCCATGAAATTGGGAATATTTTTTGGCTGTTTT
TTTTTAATGTCCATGAAAGTTTGAATTTTACTTCTGGCTGAATTGAAAAC
TTTATCTGATTGTCAAGTGGTATGGAGAAACGCGATAATTTTTCCATAAC
TGTTACACAGTTATCCTTTTTCCTGATGGTTGCAGAGCAAGTTACTATCG
TGGAATGATGTATGAAAAAAGCTGTTTTGGAAATATTTTTTGCTCGTTTT
TAATGTTATTATATTCTACTGACAATCTTAAAAATTGAAATCATTGTCAA
TCGTTAAGAAACAAACGAACGTATATACACAAAAAAATTAAAGTGAATTT
TTGATTTGGTCTTCATTTTTTGTAATTCTGAACCTTTTCCTTTCGATCTG
CTTCATCTGATAAAATCTGATGAGGTGATTAAGGTATGAGGTATATTAAA
AATTTTACTTAATATGTGAATGGTTGATATAAACAGGGACTAAAATAATG
TATTAAAGTATATGTTTTAATTACTACGATGGCTCTTTGATCAGGGGGGG
GGGGGGCTAAAATCTCTGACATGTATCATGTATTGTATTACAACTATAAA
CTTGAAACTTAAAAGAAGAAATTCTGTTTAAGGACCAATAAAAAAGCTAC
AATATTTGAATGATTTTTCATGTTAACCAAAAATGAAAGGTTATTTTGGC
AAGGCTGGTAAAGATGATAAAAAATTTGGTAACATGAGAAAATATCGGAT
TATTTTCAACTAAAACTTCAAATTTCAAGAGTCTTGCTCTATCTAACTGT
CACTGTTCTGTTTTTCCTATTTTTTCCTAAATTGTAAATAAAAATTGTTT
TTTATATCCATGAATTTCATAAGAATATTGTAGAACATTTTCTAGATTTA
ATGCGCTGTAAATAATTA Coding sequence (CDS) from alignment at sc0000427:65938..70005- >TCONS_00022572 ID=TCONS_00022572|Name=TCONS_00022572|organism=Clytia hemisphaerica|type=CDS|length=765bp|location=Sequence derived from alignment at sc0000427:65938..70005- (Clytia hemisphaerica)
ATGGTTGAAGAAAGTATTAAAGTCAAAGAATTGAATGATAATTTCACTTG
TATAATATGCAATGGTTACTTGATAAGACCTGTGGCTATTACTGAGTGTT
TACATTATTTTTGCCGGAGCTGTATTGTCAAGTATTTGGAAACAACTTCA
GAATACAAATGCCCATACTGTGAGACATTGATACATGAAACTAATCCGTG
GGAGCTGTTACGTGAAGACAAAAAACTTGAATATATAATTTATCAACTTG
TACCAGGTCTGGCGCAAAATGAGAAGAAAAGGCGTAAATTATTTTATTCG
CGACGTGGCATGGTGGACCCTGACGAGAATAACACAGATTCAAATTTAAC
TTTAGCCATAATGGATTCTAGTTCTAAAAAGGAAGAAGATGACGAAAAGA
AAAATGAAAAAGAGGATGAAAAGCCACCTGTGAATGCACCTAAACCCAAA
AAATTAGATTCATCACAAATTGGTTTACATTTGAATTTTCTTGAACCAGA
GGAACCACCTCAACAACCAAAACAAACATCATTCAGACCATTAGATAAAC
CTTATTTGAGGACTTCTTCGCATATCACTATTGCCCATTTAAAGAAATTC
TTACAAAAGAAGCTGGAGCATTCTTCGAAATGTGATGTTGATATTTTATG
TAATGGAGAGTTGATGGGACGACATCACACTTTGGAATTCATTTATATGA
CCAGGTGGCGCTATAAAGAGGGTGTTCTGAAGTTGGACTATAGACCAAAA
GTTGATATCAGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022572-exon-sc0000427-1575043694:68041..70005 | TCONS_00022572-exon-sc0000427-1575043694:68041..70005 | Clytia hemisphaerica | exon |
| TCONS_00022572-exon-sc0000427-1575043694:65938..67768 | TCONS_00022572-exon-sc0000427-1575043694:65938..67768 | Clytia hemisphaerica | exon |
| TCONS_00022572-exon-sc0000427-1510915933:68041..70005 | TCONS_00022572-exon-sc0000427-1510915933:68041..70005 | Clytia hemisphaerica | exon |
| TCONS_00022572-exon-sc0000427-1510915933:65938..67768 | TCONS_00022572-exon-sc0000427-1510915933:65938..67768 | Clytia hemisphaerica | exon |
| TCONS_00022572-exon-sc0000427-1491911889:68041..70005 | TCONS_00022572-exon-sc0000427-1491911889:68041..70005 | Clytia hemisphaerica | exon |
| TCONS_00022572-exon-sc0000427-1491911889:65938..67768 | TCONS_00022572-exon-sc0000427-1491911889:65938..67768 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000427 | supercontig | sc0000427:65938..70005 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046872 | metal ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0046872 |
metal ion binding |
Blast
BLAST of TCONS_00022572 vs. Swiss-Prot (Human)
Match: PCGF3 (Polycomb group RING finger protein 3 OS=Homo sapiens GN=PCGF3 PE=1 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 2.213e-44 Identity = 91/253 (35.97%), Postives = 146/253 (57.71%), Query Frame = 1
Query: 223 MVEESIKVKELNDNFTCIICNGYLIRPVAITECLHYFCRSCIVKYLETTSEYKCPYCETLIHETNPWELLREDKKLEYIIYQLVPGLAQNEKKRRKLFYSRRGMVDPDENNTDSNLTLAIMXXXXXXXXXXXXXXXXXXXXPPVNAPKPKKLDSSQIGLHLNFLXXXXXXXXXXXTSFRPLDKPYLRTSSHITIAHLKKFLQKKLEHSSKCDVDILCNGELMGRHHTLEFIYMTRWRYKEGVLKLDYRPKVDI 981
M+ IK+ ++N + TC +C+GYLI +TECLH FCRSC+VKYLE + CP C +IH+++P + + D+ ++ I+Y+LVPGL + E ++++ FY + GM P + ++ +DS E + + KE + Q+ + L + R L + ++R S+ T+ HLKKF+ KKL SS ++DILCN E++G+ HTL+F+ +TRWR+K+ L L YRPK+D+
Sbjct: 1 MLTRKIKLWDINAHITCRLCSGYLIDATTVTECLHTFCRSCLVKYLEENNT--CPTCRIVIHQSHPLQYIGHDRTMQDIVYKLVPGLQEAEMRKQREFYHKLGMEVPGDIKGETCSAKQHLDSHRNGETKADDSSNKEAAEEKPEEDNDYHRSDEQVSICLE----------CNSSKLRGLKRKWIRCSAQATVLHLKKFIAKKLNLSSFNELDILCNEEILGKDHTLKFVVVTRWRFKKAPLLLHYRPKMDL 241
The following BLAST results are available for this feature:
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