TCONS_00022014-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00022014-protein
Unique NameTCONS_00022014-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length185

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00022014-protein ID=TCONS_00022014-protein|Name=TCONS_00022014-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
NHLFEVELERIMRRFKCTVCGKEFTKSCSLQMHRRIHEGENLFSHDVFGN
GFQEPEIFKDSLLVENIGEINKNQQESKYSQSKKSIGENKVLKHDKESQC
KVSDSALSYSSGAKSQQKSITARSKRLISQNPLKCECNVCGKMFTRFDGL
RRHHFIHSEERPFPCKYCSKRFYRKDLLKDHIIVH
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_012361XLOC_012361Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00022014TCONS_00022014Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 15..37
e-value: 0.0019
score: 27.5
coord: 135..157
e-value: 0.19
score: 20.8
coord: 163..185
e-value: 0.0051
score: 26.0
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 135..157
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 17..37
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 165..185
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 15..42
score: 14.503
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 163..185
score: 11.115
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 133..162
score: 13.796
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 13..53
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 135..185
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 24..53
e-value: 2.5E-10
score: 39.7
NoneNo IPR availableGENE3D3.30.160.60coord: 138..152
e-value: 4.0E-6
score: 26.4
NoneNo IPR availableGENE3D2.20.25.10coord: 100..137
e-value: 0.49
score: 10.0
NoneNo IPR availableGENE3D3.30.160.60coord: 153..185
e-value: 4.1E-12
score: 45.4
NoneNo IPR availablePFAMPF00096zf-C2H2coord: 136..157
e-value: 0.0023
score: 18.2
coord: 15..37
e-value: 4.2E-4
score: 20.5
coord: 163..185
e-value: 1.7E-5
score: 24.9
NoneNo IPR availableGENE3D3.30.60.20coord: 7..23
e-value: 0.038
score: 13.4

Blast
[Close]
BLAST of TCONS_00022014-protein vs. Swiss-Prot (Human)
Match: ZN708 (Zinc finger protein 708 OS=Homo sapiens GN=ZNF708 PE=1 SV=5)

HSP 1 Score: 79.337 bits (194), Expect = 1.405e-17
Identity = 52/174 (29.89%), Postives = 80/174 (45.98%), Query Frame = 0 
Query:   13 RRFKCTVCGKEFTKSCSLQMHRRIHEGENLFSHDVFGNGFQEPEIFKDSLLVENIGEINKNQQESK-YSQSKKSIGENKVLKHDKESQCKVSDSALSYSSGAKSQQKSITARSKRLISQNPLKCECNVCGKMFTRFDGLRRHHFIHSEERPFPCKYCSKRFYRKDLLKDHIIVH 185
            + +KC  CGK F +S +L  H+ IH GE L+  +  G  F          +V    +  K ++  K + QS       K+   +K  +C     A + SS        +T   +    + P KCE   CGK F+ F  L +H  IH+EE+P+ C+ C K F R   L +H ++H
Sbjct:  158 KPYKCEECGKAFNQSSTLTRHKIIHTGEKLYKCEECGKAFNRSSNLTKHKIVHTGEKPYKCEECGKAFKQSSNLTNHKKIHTGEKPYKCGECGKAFTLSS-------HLTTHKRIHTGEKPYKCE--ECGKAFSVFSTLTKHKIIHTEEKPYKCEECGKAFNRSSHLTNHKVIH 322
The following BLAST results are available for this feature:
BLAST of TCONS_00022014-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN7081.405e-1729.89Zinc finger protein 708 OS=Homo sapiens GN=ZNF708 ... [more]
back to top