TCONS_00022014 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022014
Unique NameTCONS_00022014
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length557

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022014 ID=TCONS_00022014|Name=TCONS_00022014|organism=Clytia hemisphaerica|type=transcript|length=557bp
GTGAACGATAATATGATCCTTTAAAAGATCTTTTCTATAAAACCTCTTTG
AACAATATTTACAAGGAAAAGGTCTCTCCTCTGAATGGATAAAGTGATGC
CTTCTCAAACCATCGAAACGTGTGAACATTTTACCACAAACATTGCATTC
ACATTTTAAAGGGTTTTGGCTGATTAATCTTTTGCTTCGAGCAGTGATGC
TCTTCTGTTGACTTTTAGCACCTGAAGAATAAGATAATGCTGAGTCAGAA
ACTTTACATTGACTTTCTTTATCATGTTTTAAAACTTTATTCTCGCCGAT
TGATTTTTTGCTTTGAGAATATTTACTCTCCTGttgatttttgttgattt
caccGATATTTTCAACCAATAATGAATCTTTAAATATTTCTGGTTCTTGA
AATCCGTTGCCAAAAACATCATGTGAAAATAGATTTTCACCTTCGTGAAT
ACGACGATGCATTTGTAAACTGCAAGATTTTGTGAACTCCTTTCCACAAA
CAGTGCACTTAAACCTTCGCATTATCCTTTCCAATTCAACTTCGAATAaa
tgattgt
Run BLAST on NCBI

protein sequence of TCONS_00022014-protein

>TCONS_00022014-protein ID=TCONS_00022014-protein|Name=TCONS_00022014-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
NHLFEVELERIMRRFKCTVCGKEFTKSCSLQMHRRIHEGENLFSHDVFGN
GFQEPEIFKDSLLVENIGEINKNQQESKYSQSKKSIGENKVLKHDKESQC
KVSDSALSYSSGAKSQQKSITARSKRLISQNPLKCECNVCGKMFTRFDGL
RRHHFIHSEERPFPCKYCSKRFYRKDLLKDHIIVH
Run BLAST on NCBI

transcript from alignment at sc0000401:89374..89930

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022014 ID=TCONS_00022014|Name=TCONS_00022014|organism=Clytia hemisphaerica|type=transcript|length=557bp|location=Sequence derived from alignment at sc0000401:89374..89930 (Clytia hemisphaerica)
acaatcattTATTCGAAGTTGAATTGGAAAGGATAATGCGAAGGTTTAAG
TGCACTGTTTGTGGAAAGGAGTTCACAAAATCTTGCAGTTTACAAATGCA
TCGTCGTATTCACGAAGGTGAAAATCTATTTTCACATGATGTTTTTGGCA
ACGGATTTCAAGAACCAGAAATATTTAAAGATTCATTATTGGTTGAAAAT
ATCggtgaaatcaacaaaaatcaaCAGGAGAGTAAATATTCTCAAAGCAA
AAAATCAATCGGCGAGAATAAAGTTTTAAAACATGATAAAGAAAGTCAAT
GTAAAGTTTCTGACTCAGCATTATCTTATTCTTCAGGTGCTAAAAGTCAA
CAGAAGAGCATCACTGCTCGAAGCAAAAGATTAATCAGCCAAAACCCTTT
AAAATGTGAATGCAATGTTTGTGGTAAAATGTTCACACGTTTCGATGGTT
TGAGAAGGCATCACTTTATCCATTCAGAGGAGAGACCTTTTCCTTGTAAA
TATTGTTCAAAGAGGTTTTATAGAAAAGATCTTTTAAAGGATCATATTAT
CGTTCAC

Coding sequence (CDS) from alignment at sc0000401:89374..89930

>TCONS_00022014 ID=TCONS_00022014|Name=TCONS_00022014|organism=Clytia hemisphaerica|type=CDS|length=555bp|location=Sequence derived from alignment at sc0000401:89374..89930 (Clytia hemisphaerica)
aatcattTATTCGAAGTTGAATTGGAAAGGATAATGCGAAGGTTTAAGTG
CACTGTTTGTGGAAAGGAGTTCACAAAATCTTGCAGTTTACAAATGCATC
GTCGTATTCACGAAGGTGAAAATCTATTTTCACATGATGTTTTTGGCAAC
GGATTTCAAGAACCAGAAATATTTAAAGATTCATTATTGGTTGAAAATAT
CggtgaaatcaacaaaaatcaaCAGGAGAGTAAATATTCTCAAAGCAAAA
AATCAATCGGCGAGAATAAAGTTTTAAAACATGATAAAGAAAGTCAATGT
AAAGTTTCTGACTCAGCATTATCTTATTCTTCAGGTGCTAAAAGTCAACA
GAAGAGCATCACTGCTCGAAGCAAAAGATTAATCAGCCAAAACCCTTTAA
AATGTGAATGCAATGTTTGTGGTAAAATGTTCACACGTTTCGATGGTTTG
AGAAGGCATCACTTTATCCATTCAGAGGAGAGACCTTTTCCTTGTAAATA
TTGTTCAAAGAGGTTTTATAGAAAAGATCTTTTAAAGGATCATATTATCG
TTCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012361XLOC_012361Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022014-exon-sc0000401-1491911889:89374..89930TCONS_00022014-exon-sc0000401-1491911889:89374..89930Clytia hemisphaericaexon
TCONS_00022014-exon-sc0000401-1510915933:89374..89930TCONS_00022014-exon-sc0000401-1510915933:89374..89930Clytia hemisphaericaexon
TCONS_00022014-exon-sc0000401-1575043694:89374..89930TCONS_00022014-exon-sc0000401-1575043694:89374..89930Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022014-proteinTCONS_00022014-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000401supercontigsc0000401:89374..89930 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.11082	0.497075	0.461721	0.677583	0.137482	0	0.13107	0.245412	0.171818	0.42565	0.413146	0.407379	0.203406	0.563305	0.173668	0.496992	0.0765316	0.31377	0	0	0.295706	0.183074	0.701346	1.38152	0.109457	0.488437	0	0.149188	0.339461	0.807001
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022014 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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