TCONS_00021488-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00021488-protein
Unique Name	TCONS_00021488-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	498

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00021488-protein ID=TCONS_00021488-protein|Name=TCONS_00021488-protein|organism=Clytia hemisphaerica|type=polypeptide|length=498bp
IAEDKVFQRAKKDDEALSDVFSSIGDNYGKHLRPNYMQKPTKIALDITID
SIGEINSIRKTVKITIYLRQRWKDYRYTHNLTTKMTPNLATHGHPANYIW
VPDTTLINMKGAKRHTKNDKLDIFPDGTIFWATMLTMEIKCDMKFHDFPI
DTQTCIFGFESYSYNADHVVYEWHGTRIHFVSTDVEQFLLKNYSSSTTIE
LYEAGRFSTLKVYMSFERQLPVTILQIFFPAVLVVCVSWVTLWMHKRSPS
ARIGLGTTTLLTLTMIWLSANKKIPKVSYVKAIDIYFMISFCFILGVLFE
YVLVTNINFAEWKVEHEERDLKRKRRKKRSDITDSATSALMEMKLLKEQS
LEIARKSSIFGLRNDGRHRRIKKANDILREKTTYQEMLDEGFDLEPELEK
SDSESECSDDDAVGTKNSIFLDKRVISMFLNTRPSTLDIICRFMFPFCYL
CFAFYWWLYYMSKRANHETSWCADLENTCTDDSIFLIDCQNHFGDVHD

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_012051	XLOC_012051	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00021488	TCONS_00021488	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006201	Neur_channel
IPR006028	GABAA/Glycine_rcpt
IPR006202	Neur_chan_lig-bd
IPR006029	Neurotrans-gated_channel_TM
IPR018000	Neurotransmitter_ion_chnl_CS

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0006811	ion transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0005216	ion channel activity
GO:0005230	extracellular ligand-gated ion channel activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006811	ion transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005230	extracellular ligand-gated ion channel activity
molecular_function	GO:0005216	ion channel activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 307..327
None	No IPR available	GENE3D	1.20.58.390		coord: 225..468 e-value: 2.0E-40 score: 137.7
IPR006201	Neurotransmitter-gated ion-channel	PRINTS	PR00252	NRIONCHANNEL	coord: 141..155 score: 43.68 coord: 98..109 score: 45.81 coord: 63..79 score: 30.64
IPR006028	Gamma-aminobutyric acid A receptor/Glycine receptor alpha	PRINTS	PR00253	GABAARECEPTR	coord: 249..270 score: 42.24 coord: 283..304 score: 33.23 coord: 223..243 score: 37.84 coord: 440..460 score: 32.15
IPR006202	Neurotransmitter-gated ion-channel ligand-binding domain	PFAM	PF02931	Neur_chan_LBD	coord: 20..205 e-value: 4.6E-36 score: 124.2
IPR006202	Neurotransmitter-gated ion-channel ligand-binding domain	GENE3D	2.70.170.10		coord: 11..224 e-value: 6.3E-44 score: 149.5
IPR006202	Neurotransmitter-gated ion-channel ligand-binding domain	SUPERFAMILY	63712	Nicotinic receptor ligand binding domain-like	coord: 19..219
IPR006029	Neurotransmitter-gated ion-channel transmembrane domain	PFAM	PF02932	Neur_chan_memb	coord: 228..457 e-value: 2.7E-24 score: 86.4
IPR006029	Neurotransmitter-gated ion-channel transmembrane domain	SUPERFAMILY	90112	Neurotransmitter-gated ion-channel transmembrane pore	coord: 224..332 coord: 429..462
IPR018000	Neurotransmitter-gated ion-channel, conserved site	PROSITE	PS00236	NEUROTR_ION_CHANNEL	coord: 141..155

Blast

[Close]

BLAST of TCONS_00021488-protein vs. Swiss-Prot (Human)
Match: GLRA3 (Glycine receptor subunit alpha-3 OS=Homo sapiens GN=GLRA3 PE=1 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 9.984e-56
Identity = 128/442 (28.96%), Postives = 206/442 (46.61%), Query Frame = 0

Query:   27 NYGKHLRPNYMQKPTKIALDITIDSIGEINSIRKTVKITIYLRQRWKDYRYTHNLTTKMTPNLATHGHPA--NYIWVPDTTLINMKGAKRH---TKNDKLDIFPDGTIFWATMLTMEIKCDMKFHDFPIDTQTCIFGFESYSYNADHVVYEWHGTRIHFVSTDV--EQFLLKNYSS-STTIELYEAGRFSTLKVYMSFERQLPVTILQIFFPAVLVVCVSWVTLWMHKRSPSARIGLGTTTLLTLTMIWLSANKKIPKVSYVKAIDIYFMISFCFILGVLFEYVLVTNINFAEWKVEHEERDLKRKRRKKRSDITDSATSALMEMKLLKEQSLEIARKSSIFGLRNDGRHRRIKKANDILREKTTYQEMLDEGFDLEPELEKSDSESECSDDDAVGTKNSIFLDKRVISMFLNTRPSTLDIICRFMFPFCYLCFAFYWWLYY 460
             Y   +RPN+   P  +  +I I+S G I       ++ I+LRQ+W D R    L     P+ +    P+  + IW PD    N KGA  H   T N  L IF +G + ++  LT+ + C M   +FP+D QTCI   ES+ Y  + +++EW       V+  +   QFLLK         + Y  G+F+ ++V    ERQ+   ++Q++ P++L+V +SWV+ W++  +  AR+ LG TT+LT+T     +   +PKVSYVKAIDI+  +   F+   L EY  V   NF    V  + ++L R RRK+++                         K+  F L    +  R    +D +RE           + + P L+  D  +    +  V        + R +  F++ R   +D I R  FP  +L F  ++W+ Y
Sbjct:   56 GYDARIRPNFKGPPVNVTCNIFINSFGSIAETTMDYRVNIFLRQKWNDPR----LAYSEYPDDSLDLDPSMLDSIWKPDLFFANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLTLSCPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWQDEAPVQVAEGLTLPQFLLKEEKDLRYCTKHYNTGKFTCIEVRFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAV---NF----VSRQHKELLRFRRKRKN-------------------------KTEAFALE---KFYRFSDMDDEVRE----SRFSFTAYGMGPCLQAKDGMTPKGPNHPVQVMPKSPDEMRKV--FID-RAKKIDTISRACFPLAFLIFNIFYWVIY 451

The following BLAST results are available for this feature:

BLAST of TCONS_00021488-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00021488-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GLRA3	9.984e-56	28.96	Glycine receptor subunit alpha-3 OS=Homo sapiens G...	[more]

You are here

TCONS_00021488-protein (polypeptide) - C. hemisphaerica