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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021488 ID=TCONS_00021488|Name=TCONS_00021488|organism=Clytia hemisphaerica|type=transcript|length=1808bpRun BLAST on NCBI protein sequence of TCONS_00021488-protein >TCONS_00021488-protein ID=TCONS_00021488-protein|Name=TCONS_00021488-protein|organism=Clytia hemisphaerica|type=polypeptide|length=498bp IAEDKVFQRAKKDDEALSDVFSSIGDNYGKHLRPNYMQKPTKIALDITIDRun BLAST on NCBI transcript from alignment at sc0000388:31615..43086+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021488 ID=TCONS_00021488|Name=TCONS_00021488|organism=Clytia hemisphaerica|type=transcript|length=11472bp|location=Sequence derived from alignment at sc0000388:31615..43086+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000388:31615..43086+ >TCONS_00021488 ID=TCONS_00021488|Name=TCONS_00021488|organism=Clytia hemisphaerica|type=CDS|length=13473bp|location=Sequence derived from alignment at sc0000388:31615..43086+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00021488 vs. Swiss-Prot (Human)
Match: GBRG3 (Gamma-aminobutyric acid receptor subunit gamma-3 OS=Homo sapiens GN=GABRG3 PE=2 SV=2) HSP 1 Score: 167.933 bits (424), Expect = 3.478e-45 Identity = 99/298 (33.22%), Postives = 155/298 (52.01%), Query Frame = 1
Query: 31 KKDDEALSDVFSSIGDNYGKHLRPNYMQKPTKIALDITIDSIGEINSIRKTVKITIYLRQRWKDYRYTHNLTTKMTPNLATHGHPANYIWVPDTTLINMKGAKRH---TKNDKLDIFPDGTIFWATMLTMEIKCDMKFHDFPIDTQTCIFGFESYSYNADHVVYEWHGTRIHFV---STDVEQFLLKNYSSSTTIELYEAGRFSTLKVYMSFERQLPVTILQIFFPAVLVVCVSWVTLWMHKRSPSARIXXXXXXXXXXXMIWLSANKKIPKVSYVKAIDIYFMISFCFILGVLFEYV 906
K D ++ + + + Y K LRP+ KPT I +DI ++SIG ++SI +I I+ Q W D R N T K+ L + + IW+PDT N K A+ H T N L I+ DG I + LT+ +C ++ H+FP+D +C F SY Y + ++Y W + S + QF ++T I AG + + +Y R++ +Q + P +L V +SWV+ W+ K + AR LG TT+LT+T + A K +P+VSYV A+D++ + F F+ L EY
Sbjct: 41 KSQDTDVTLILNKLLREYDKKLRPDIGIKPTVIDVDIYVNSIGPVSSINMEYQIDIFFAQTWTDSRLRFNSTMKI---LTLNSNMVGLIWIPDTIFRNSKTAEAHWITTPNQLLRIWNDGKILYTLRLTINAECQLQLHNFPMDEHSCPLIFSSYGYPKEEMIYRWRKNSVEAADQKSWRLYQFDFMGLRNTTEIVTTSAGDYVVMTIYFELSRRMGYFTIQTYIPCILTVVLSWVSFWIKKDATPARTALGITTVLTMTTLSTIARKSLPRVSYVTAMDLFVTVCFLFVFAALMEYA 335 The following BLAST results are available for this feature:
BLAST of TCONS_00021488 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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