TCONS_00021057-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00021057-protein
Unique Name	TCONS_00021057-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	569

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00021057-protein ID=TCONS_00021057-protein|Name=TCONS_00021057-protein|organism=Clytia hemisphaerica|type=polypeptide|length=569bp
SYANYVRNTIFPDRIGSKKSSGIFESRLQHHISFFKMAAHFVPPVIQDNS
NGWGPCTASNEFKDIPYQPFSKGDRIGKISDWTGQFQDRNKYHSQFAAGN
QYAYYHEGDESSFQLVDTSKPQKTAYQKNRQRFNNNRMKREREKQQRKEA
IMMGQTTRVKLQKKNAKNNYYHRRWNDRQQVQKNRAASVVVKDDWKVVEE
FDFPRLGKLKLPDIKDPVDLYNCGTMEQYDKAYDRVTTKNERVLEQNSRT
FHRVTTTDDPIIRKLTSKGNVFGTDAIISALMCCTRSVASWDIIVQRVGK
KLFFDKRDDSDFDLMSVFETTQEEMKEEGINSPNNLASEATYINQNFSQQ
CLKKGDTLKYDNPNPFAEDDGDEVASVGYKYRKYDIGNGIDLVVRCEHDA
YLKTPAGVQQYYSIKALNEFDPRISKIEWRQKLDSQIGSVLAIELKNNSN
KIAKWTCNAILASADIMKIGYVSRHTPNDTTRHVILGTQQFKPNMFAQQI
ALDMDNCWGILRVIVDTCLSLPEGKYLLLKDPNKGVVRLYDIPDNTFESD
EDEDSADDEDEDESEEEEK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_011809	XLOC_011809	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00021057	TCONS_00021057	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007783	eIF3d

Vocabulary: **Cellular Component**
Term	Definition
GO:0005737	cytoplasm
GO:0005852	eukaryotic translation initiation factor 3 complex

Vocabulary: **Molecular Function**
Term	Definition
GO:0003743	translation initiation factor activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005852	eukaryotic translation initiation factor 3 complex
molecular_function	GO:0003743	translation initiation factor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 226..246
None	No IPR available	COILS	Coil	Coil	coord: 128..148
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 542..569
IPR007783	Eukaryotic translation initiation factor 3 subunit D	PFAM	PF05091	eIF-3_zeta	coord: 42..541 e-value: 4.1E-195 score: 649.6
IPR007783	Eukaryotic translation initiation factor 3 subunit D	PIRSF	PIRSF016281	Transl_init_eIF3d	coord: 36..569 e-value: 3.3E-205 score: 681.0
IPR007783	Eukaryotic translation initiation factor 3 subunit D	HAMAP	MF_03003	eIF3d	coord: 39..553 score: 65.593

Blast

[Close]

BLAST of TCONS_00021057-protein vs. Swiss-Prot (Human)
Match: EIF3D (Eukaryotic translation initiation factor 3 subunit D OS=Homo sapiens GN=EIF3D PE=1 SV=1)

HSP 1 Score: 612.453 bits (1578), Expect = 0.000e+0
Identity = 296/530 (55.85%), Postives = 391/530 (73.77%), Query Frame = 0

Query:   39 AHFVPPVIQDNSNGWGPCTASNEFKDIPYQPFSKGDRIGKISDWTGQ-FQDR---NKYHSQFAAGNQYAYYHEGDESSFQLVDTSKPQKTAYQKNRQRFNNNRMKREREK--------QQRKEAIMMGQTTRVKLQKKNAKNNYYHRRWNDRQQVQKNRAASVVVKDDWKVVEEFDFPRLGKLKLPDIKDPVDLYNCGTMEQYDKAYDRVTTKNERVLEQNSRTFHRVTTTDDPIIRKLT-SKGNVFGTDAIISALMCCTRSVASWDIIVQRVGKKLFFDKRDDSDFDLMSVFETTQEEMKEEG--INSPNNLASEATYINQNFSQQCLKKG-DTLKYDNPNPFAEDDGD--EVASVGYKYRKYDIGNGIDLVVRCEHDAYLKTPAGVQQYYSIKALNEFDPR-ISKIEWRQKLDSQIGSVLAIELKNNSNKIAKWTCNAILASADIMKIGYVSRHTPNDTTRHVILGTQQFKPNMFAQQIALDMDNCWGILRVIVDTCLSLPEGKYLLLKDPNKGVVRLYDIPDNTFES 549
            A F+ PVIQDN +GWGPC    +F+D+PYQPFSKGDR+GK++DWTG  +QD+   NKY SQF  G+QYAY+HE DESSFQLVDT++ QKTAYQ+NR RF    ++R++++        Q   ++    +  R++LQKK  K     ++W+  Q+ QK R +SV V+ DW+V EE DFP+L K++  ++ +P D+  CG +E YDKA+DR+TT++E+ L    R FH VTTTDDP+IRKL  ++GNVF TDAI++ LM CTRSV SWDI+VQRVG KLFFDKRD+SDFDL++V ET  E  ++EG   NSP NLA EATYIN NFSQQCL+ G +   + NPNPF EDD D  E+ASV Y+YR++ +G+ IDL+VRCEHD  +    G   + +IK LNE+D R  + ++WRQKLDSQ G+V+A ELKNNS K+A+WTC A+LA ++ +K+GYVSR+   D++RHVILGTQQFKPN FA QI L ++N WGILR ++D C+ L EGKYL+LKDPNK V+R+Y +PD TF S
Sbjct:    2 AKFMTPVIQDNPSGWGPCAVPEQFRDMPYQPFSKGDRLGKVADWTGATYQDKRYTNKYSSQFGGGSQYAYFHEEDESSFQLVDTARTQKTAYQRNRMRFAQRNLRRDKDRRNMLQFNLQILPKSAKQKERERIRLQKKFQKQFGVRQKWD--QKSQKPRDSSVEVRSDWEVKEEMDFPQLMKMRYLEVSEPQDIECCGALEYYDKAFDRITTRSEKPLRSIKRIFHTVTTTDDPVIRKLAKTQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKLFFDKRDNSDFDLLTVSETANEPPQDEGNSFNSPRNLAMEATYINHNFSQQCLRMGKERYNFPNPNPFVEDDMDKNEIASVAYRYRRWKLGDDIDLIVRCEHDGVMTGANGEVSFINIKTLNEWDSRHCNGVDWRQKLDSQRGAVIATELKNNSYKLARWTCCALLAGSEYLKLGYVSRYHVKDSSRHVILGTQQFKPNEFASQINLSVENAWGILRCVIDICMKLEEGKYLILKDPNKQVIRVYSLPDGTFSS 529

The following BLAST results are available for this feature:

BLAST of TCONS_00021057-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00021057-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
EIF3D	0.000e+0	55.85	Eukaryotic translation initiation factor 3 subunit...	[more]

You are here

TCONS_00021057-protein (polypeptide) - C. hemisphaerica