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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021057 ID=TCONS_00021057|Name=TCONS_00021057|organism=Clytia hemisphaerica|type=transcript|length=1963bpRun BLAST on NCBI protein sequence of TCONS_00021057-protein >TCONS_00021057-protein ID=TCONS_00021057-protein|Name=TCONS_00021057-protein|organism=Clytia hemisphaerica|type=polypeptide|length=569bp SYANYVRNTIFPDRIGSKKSSGIFESRLQHHISFFKMAAHFVPPVIQDNSRun BLAST on NCBI transcript from alignment at sc0000377:76036..90326- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021057 ID=TCONS_00021057|Name=TCONS_00021057|organism=Clytia hemisphaerica|type=transcript|length=14291bp|location=Sequence derived from alignment at sc0000377:76036..90326- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000377:76036..90326- >TCONS_00021057 ID=TCONS_00021057|Name=TCONS_00021057|organism=Clytia hemisphaerica|type=CDS|length=22230bp|location=Sequence derived from alignment at sc0000377:76036..90326- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00021057 vs. Swiss-Prot (Human)
Match: EIF3D (Eukaryotic translation initiation factor 3 subunit D OS=Homo sapiens GN=EIF3D PE=1 SV=1) HSP 1 Score: 584.334 bits (1505), Expect = 0.000e+0 Identity = 295/528 (55.87%), Postives = 386/528 (73.11%), Query Frame = 3
Query: 117 AHFVPPVIQDNSNGWGPCTASNEFKDIPYQPFSKGDRIGKISDWTGQ-FQDR---NKYHSQFAAGNQYAYYHEGDESSFQLVDTSKPQKTAYQKNRQRF--------NNNRMXXXXXXXXXXXAIMMGQTTRVKLQKKNAKNNYYHRRWNDRQQVQKNRAASXXXXXXXXXXXXFDFPRLGKLKLPDIKDPVDLYNCGTMEQYDKAYDRVTTKNERVLEQNSRTFHRVTTTDDPIIRKLT-SKGNVFGTDAIISALMCCTRSVASWDIIVQRVGKKLFFDKRDDSDFDLMSVFETTQEEMKEEG--INSPNNLASEATYINQNFSQQCLKKG-DTLKYDNPNPFAEDDGD--EVASVGYKYRKYDIGNGIDLVVRCEHDAYLKTPAGVQQYYSIKALNEFDPR-ISKIEWRQKLDSQIGSVLAIELKNNSNKIAKWTCNAILASADIMKIGYVSRHTPNDTTRHVILGTQQFKPNMFAQQIALDMDNCWGILRVIVDTCLSLPEGKYLLLKDPNKGVVRLYDIPDNTF 1643
A F+ PVIQDN +GWGPC +F+D+PYQPFSKGDR+GK++DWTG +QD+ NKY SQF G+QYAY+HE DESSFQLVDT++ QKTAYQ+NR RF + R + Q ++ + R++LQKK K ++W+ Q+ QK R +SV V+ DW+V EE DFP+L K++ ++ +P D+ CG +E YDKA+DR+TT++E+ L R FH VTTTDDP+IRKL ++GNVF TDAI++ LM CTRSV SWDI+VQRVG KLFFDKRD+SDFDL++V ET E ++EG NSP NLA EATYIN NFSQQCL+ G + + NPNPF EDD D E+ASV Y+YR++ +G+ IDL+VRCEHD + G + +IK LNE+D R + ++WRQKLDSQ G+V+A ELKNNS K+A+WTC A+LA ++ +K+GYVSR+ D++RHVILGTQQFKPN FA QI L ++N WGILR ++D C+ L EGKYL+LKDPNK V+R+Y +PD TF
Sbjct: 2 AKFMTPVIQDNPSGWGPCAVPEQFRDMPYQPFSKGDRLGKVADWTGATYQDKRYTNKYSSQFGGGSQYAYFHEEDESSFQLVDTARTQKTAYQRNRMRFAQRNLRRDKDRRNMLQFNLQILPKSAKQKERERIRLQKKFQKQFGVRQKWD--QKSQKPRDSSVEVRSDWEVKEEMDFPQLMKMRYLEVSEPQDIECCGALEYYDKAFDRITTRSEKPLRSIKRIFHTVTTTDDPVIRKLAKTQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKLFFDKRDNSDFDLLTVSETANEPPQDEGNSFNSPRNLAMEATYINHNFSQQCLRMGKERYNFPNPNPFVEDDMDKNEIASVAYRYRRWKLGDDIDLIVRCEHDGVMTGANGEVSFINIKTLNEWDSRHCNGVDWRQKLDSQRGAVIATELKNNSYKLARWTCCALLAGSEYLKLGYVSRYHVKDSSRHVILGTQQFKPNEFASQINLSVENAWGILRCVIDICMKLEEGKYLILKDPNKQVIRVYSLPDGTF 527 The following BLAST results are available for this feature:
BLAST of TCONS_00021057 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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