TCONS_00019572-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00019572-protein
Unique NameTCONS_00019572-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length398

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00019572-protein ID=TCONS_00019572-protein|Name=TCONS_00019572-protein|organism=Clytia hemisphaerica|type=polypeptide|length=398bp
MDAISNCSRLSVLDLQHSPNISDSSLLAASAILKKNLVVLKISGASKITD
QSLEGITMHATNLKKLKLYGCNKLTTDGINTLLKSVHLDEIDLSYTVAYS
SGPQAGRFQADEFSPTLRRFISCGVQLPSFVMMDLANRCQLLSTLVLCGV
KSIDDTLLNELGKICGNRLTKLDLSYCDQVSDSGLEIVVRRFKTLQSLKF
QHFQGTGGPLKQYYEENRRIQAEKMEELCFPACRHFDGHHLEYVLPFFKN
LTKLDVSGMKNVGDNFLRIVAVHCKRLQDLCLKACKQVSDEGICDVFRNG
SPIEKLILSGNPKLTDRSIFTMASHLANTLSALYISGCTRISPQAVLYLK
DECVNGVHVQHIVPNSPPDRVMGKDLDSGQFHPMNGTDADLFYWTPTI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011004XLOC_011004Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00019572TCONS_00019572Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR032675L_dom-like
IPR001611Leu-rich_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 7..32
e-value: 24.0
score: 11.5
coord: 327..352
e-value: 140.0
score: 5.6
coord: 139..164
e-value: 34.0
score: 10.4
coord: 60..85
e-value: 0.85
score: 18.7
coord: 300..325
e-value: 8.0
score: 15.3
coord: 274..299
e-value: 0.019
score: 24.1
coord: 166..191
e-value: 0.021
score: 24.0
coord: 34..59
e-value: 300.0
score: 3.0
coord: 248..273
e-value: 31.0
score: 10.7
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 220..359
e-value: 2.2E-14
score: 52.5
coord: 1..105
e-value: 1.4E-12
score: 46.6
coord: 106..219
e-value: 6.2E-8
score: 31.3
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 168..186
e-value: 0.029
score: 14.3
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 127..350
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 3..97

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019572-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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