TCONS_00019374-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00019374-protein
Unique NameTCONS_00019374-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length180

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00019374-protein ID=TCONS_00019374-protein|Name=TCONS_00019374-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
VNGGWSRWSSWSACDVYCGNGRQSRQRLCNEPAPRKNGNPCNGKSRETKS
CRSGACYKSRYDCEFDNDGWCLWRSQHGHWKIVSSNYNDEIVGPKTDVSF
GIGRYLILKDDQKDSLILKDLPKNQICFSFHLQKTKNTKLIVTGLDASGK
HILFQSHPGGKPISEWTNVKIPLIDARFIE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010890XLOC_010890Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00019374TCONS_00019374Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
IPR000998MAM_dom
IPR013320ConA-like_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01705TSP1REPEATcoord: 3..16
score: 51.15
coord: 40..51
score: 38.99
coord: 21..32
score: 45.16
NoneNo IPR availableGENE3D2.60.120.200coord: 58..178
e-value: 3.4E-6
score: 26.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..49
IPR000884Thrombospondin type-1 (TSP1) repeatSMARTSM00209TSP1_2coord: 5..57
e-value: 4.3E-11
score: 52.9
IPR000884Thrombospondin type-1 (TSP1) repeatPFAMPF00090TSP_1coord: 6..56
e-value: 1.6E-12
score: 47.4
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 1..56
e-value: 6.2E-15
score: 54.7
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 2..57
score: 13.521
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 1..51
IPR000998MAM domainPFAMPF00629MAMcoord: 63..173
e-value: 4.9E-7
score: 29.7
IPR000998MAM domainPROSITEPS50060MAM_2coord: 61..109
score: 9.024
IPR013320Concanavalin A-like lectin/glucanase domainSUPERFAMILY49899Concanavalin A-like lectins/glucanasescoord: 61..173

Blast
[Close]
BLAST of TCONS_00019374-protein vs. Swiss-Prot (Human)
Match: TSP1 (Thrombospondin-1 OS=Homo sapiens GN=THBS1 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 6.387e-17
Identity = 32/55 (58.18%), Postives = 42/55 (76.36%), Query Frame = 0 
Query:    2 NGGWSRWSSWSACDVYCGNGRQSRQRLCNEPAPRKNGNPCNGKSRETKSCRSGAC 56
            +GGWS WS WS+C V CG+G  +R RLCN P+P+ NG PC G++RETK+C+  AC
Sbjct:  435 DGGWSHWSPWSSCSVTCGDGVITRIRLCNSPSPQMNGKPCEGEARETKACKKDAC 489
The following BLAST results are available for this feature:
BLAST of TCONS_00019374-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TSP16.387e-1758.18Thrombospondin-1 OS=Homo sapiens GN=THBS1 PE=1 SV=... [more]
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