TCONS_00019374 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019374
Unique NameTCONS_00019374
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length542

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019374 ID=TCONS_00019374|Name=TCONS_00019374|organism=Clytia hemisphaerica|type=transcript|length=542bp
AAGTCAATGGAGGCTGGTCTCGCTGGTCCAGTTGGTCTGCCTGTGACGTG
TATTGTGGAAATGGAAGACAATCGAGACAAAGGTTGTGCAATGAGCCAGC
TCCAAGGAAGAATGGAAATCCTTGCAATGGTAAAAGCAGAGAAACGAAAT
CTTGTAGGTCAGGCGCTTGTTATAAGAGTCGTTATGATTGTGAATTTGAT
AATGATGGTTGGTGTTTATGGAGATCACAGCACGGACATTGGAAAATCGT
CTCTTCGAATTATAATGATGAAATTGTTGGTCCTAAAACAGATGTTTCAT
TTGGGATAGGACGTTACCTGATTCTTAAAGATGACCAAAAAGACTCATTA
ATACTGAAGGATTTACCCAAAAATCAAATCTGCTTCTCTTTTCACCTTCA
AAAAACGAAGAATACAAAATTAATAGTTACGGGGCTTGATGCCAGTGGCA
AACATATACTTTTTCAATCGCATCCTGGTGGTAAACCAATATCAGAATGG
ACGAATGTTAAAATTCCATTGATTGATGCAAGATTTATCGAG
Run BLAST on NCBI

protein sequence of TCONS_00019374-protein

>TCONS_00019374-protein ID=TCONS_00019374-protein|Name=TCONS_00019374-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
VNGGWSRWSSWSACDVYCGNGRQSRQRLCNEPAPRKNGNPCNGKSRETKS
CRSGACYKSRYDCEFDNDGWCLWRSQHGHWKIVSSNYNDEIVGPKTDVSF
GIGRYLILKDDQKDSLILKDLPKNQICFSFHLQKTKNTKLIVTGLDASGK
HILFQSHPGGKPISEWTNVKIPLIDARFIE
Run BLAST on NCBI

transcript from alignment at sc0000326:146173..149117+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019374 ID=TCONS_00019374|Name=TCONS_00019374|organism=Clytia hemisphaerica|type=transcript|length=2945bp|location=Sequence derived from alignment at sc0000326:146173..149117+ (Clytia hemisphaerica)
AAGTCAATGGAGGCTGGTCTCGCTGGTCCAGTTGGTCTGCCTGTGACGTG
TATTGTGGAAATGGAAGACAATCGAGACAAAGGTTGTGCAATGAGCCAGC
TCCAAGGAAGAATGGAAATCCTTGCAATGGTAAAAGCAGAGAAACGAAAT
CTTGTAGGTCAGGCGCTTGTTATAAGAGTAAGTGATTTATTATAATGAGA
tgggatggagtttttacaagatactttaataattgggcatttaaagtaat
agagatgacgcgttctttagaaaaagtaacaaaattgttttattacaggt
taatgaccaaccaaatcaaataagagcttctaaaaactccagcttgtccc
attaTAATGATaggtcaaaactttttttttaatgcagaactcaaagtttc
atgcttacAATCATCAATTTACATATGATACAAGTGACaagttagcctgg
gaatccaagctcataatcttagaaaaaaacaaaaaatacctcacctcaca
aagttctaaaattatagagcttggtgcaggtagattaagtctgacacaga
atgttataaaccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNacagaatgtta
taaacagtctgtgtgtgaaccctcgttgacagactttctgaactttggaa
acccaggcaaacacacataatcaacttaccataaaaaccctttcacaagc
tctaaagactaaaaaccacatcaaaacatcagccaccgtatttagacttc
cagccaacagccattttgtttcaaaatttctatgttttcattttcatttg
ttttcctttttctgcagagtcagttttttccataaattatgcgcgcgcat
caaAATTATCAAACTGCGCGCGAAAATACTGCTAGATAATAcaccgaaag
ctggccaatcaagccgaacctgcattgcagggaaaaatctccctgcaggc
gagttacctgcgccaagcgttaaacaagcagcaaaaatatcataaactag
actgtgaaaaaggtttaacgcttggattcccaggctagtgaCAAGTGTGA
TctaattgaaaaaattcaaaattcaaacgtTACTACAATCGACAAGTCGT
AAAAATTAAAGagtaaatagaaaaaataatcaatttttgtACCCTTTTAG
GTATTAATGGcgtcaaatcttttttttgaatttaggaCATCAATTTTAGG
TCAAACTCGAAGATTACTTCCATCAATGccatcaatttcaacaacaaata
AGAAACTTAagcaaatgaacacgtaaaataagaagcAATACTAACAAAAG
GGAAAATTTTaccaagtttaaggtctatctacactgtaataaaatattga
attatttgaAGTTAATTAGCGGGGTCTCTTAATAAAAGCAGGggggtgga
ttttttttcttaacaattggcggggacgtctattcgggagacaagagtat
ctATTAAGTCATTCACTCCAAATATATCCGATATATCGAAGACAGTAGCA
TGTTCTTTCGAAGTCAGTTAGCTTTTTGTAGAAGCCATGACCAGCTGATA
ACTTCAGataaaaaaaagacgaaaacaaGGCCGAAAAAAGACATTTTGGT
TTCTTGATActcaaaaaaagacaaaatagaaTTAAACATTTTGTCTTTCT
TTGAGTGGCAAGGAACCAAGATGTCTTTTTTCGGACTTGCTTTCGTCTTA
TGACAAATATACTCACAAAacagtgaaaataagaacatgttaagaacatt
tttaggcttgaaactcaaactgttaagaacatccaaaggcttcaaatttT
GGATGCTTTTATAAAAATACGTGCATTATCTTTCTGGAAGGTCGTTATGA
TTGTGAATTTGATAATGATGGTTGGTGTTTATGGAGATCACAGCACGGAC
ATTGGAAAATCGTCTCTTCGAATTATAATGATGAAATTGTTGGTCCTAAA
ACAGATGTTTCATTTGGGATAGGTGAGTGCCTTTTTTTCCAAACacgcgt
tttttttataagaacaagtatatatgaacataaggcttcgatgaccaaaa
tattaagaacaagttaagattTTAAGGATTTGCGGACTCAAGAACACCCC
ATTTgtcaggaaaatggacaaaaatactcaaaaaatggcgaaaataagaa
catgaagCTTTCGAaagcttcaaagattttggatgttcttataaaaaaca
acgtgtaaaaCTCATTtcgtcgaagccttatgttcttacatagtttgttc
ttataaaaaacgtgtactgaaAGACTTTCCCAAAGATTAAATCTGCTTTC
gttttatcttcaaataacGAAGTCGTGTTTATAAACAGTTTCTTCATAAC
CGAAGAACacaaaactaataaaaacaGGTCATTATGccataaacgttttt
tataagaacaaactatatataatAACATAAGGCTTAGATatccaaaatgt
taagaacaagttaaggctTTCCTGGACTCAAAAGCAcccgttttcttagg
aaaacgggaaaaaatggtcacaaaatggtgaaagcaagaatattttaagt
atatttttaggcttgaaacccaaaaagttaagaacatccaaaggcttcaa
aaaatttgggtgttcttataaaaatcttatctacatgttttttttttacc
ttttactTTTAGGACGTTACCTGATTCTTAAAGATGACCAAAAAGACTCA
TTAATACTGAAGGATTTACCCAAAAATCAAATCTGCTTCTCTTTTCACCT
TCAAAAAACGAAGAATACAAAATTAATAGTTACGGGGCTTGATGCCAGTG
GCAAACATATACTTTTTCAATCGCATCCTGGTGGTAAACCAATATCAGAA
TGGACGAATGTTAAAATTCCATTGATTGATGCAAGATTTATCGAG

Coding sequence (CDS) from alignment at sc0000326:146173..149117+

>TCONS_00019374 ID=TCONS_00019374|Name=TCONS_00019374|organism=Clytia hemisphaerica|type=CDS|length=1620bp|location=Sequence derived from alignment at sc0000326:146173..149117+ (Clytia hemisphaerica)
GTCAATGGAGGCTGGTCTCGCTGGTCCAGTTGGTCTGCCTGTGACGTGTA
TTGTGGAAATGGAAGACAATCGAGACAAAGGTTGTGCAATGAGCCAGCTC
CAAGGAAGAATGGAAATCCTTGCAATGGTAAAAGCAGAGAAACGAAATCT
TGTAGGTCAGGCGCTTGTTATAAGAGTCGTTATGATTGTGAATTTGATAA
TGATGGTTGGTGTTTATGGAGATCACAGCACGGACATTGGAAAATCGTCT
CTTCGAATTATAATGATGAAATTGTTGGTCCTAAAACAGATGTTTCATTT
GGGATAGGACGTTACCTGATTCTTAAAGATGACCAAAAAGACTCATTAAT
ACTGAAGGATTTACCCAAAAATCAAATCTGCTTCTCTTTTCACCTTCAAA
AAACGAAGAATACAAAATTAATAGTTACGGGGCTTGATGCCAGTGGCAAA
CATATACTTTTTCAATCGCATCCTGGTGGTAAACCAATATCAGAATGGAC
GAATGTTAAAATTCCATTGATTGATGCAAGATTTATCGAGGTCAATGGAG
GCTGGTCTCGCTGGTCCAGTTGGTCTGCCTGTGACGTGTATTGTGGAAAT
GGAAGACAATCGAGACAAAGGTTGTGCAATGAGCCAGCTCCAAGGAAGAA
TGGAAATCCTTGCAATGGTAAAAGCAGAGAAACGAAATCTTGTAGGTCAG
GCGCTTGTTATAAGAGTCGTTATGATTGTGAATTTGATAATGATGGTTGG
TGTTTATGGAGATCACAGCACGGACATTGGAAAATCGTCTCTTCGAATTA
TAATGATGAAATTGTTGGTCCTAAAACAGATGTTTCATTTGGGATAGGAC
GTTACCTGATTCTTAAAGATGACCAAAAAGACTCATTAATACTGAAGGAT
TTACCCAAAAATCAAATCTGCTTCTCTTTTCACCTTCAAAAAACGAAGAA
TACAAAATTAATAGTTACGGGGCTTGATGCCAGTGGCAAACATATACTTT
TTCAATCGCATCCTGGTGGTAAACCAATATCAGAATGGACGAATGTTAAA
ATTCCATTGATTGATGCAAGATTTATCGAGGTCAATGGAGGCTGGTCTCG
CTGGTCCAGTTGGTCTGCCTGTGACGTGTATTGTGGAAATGGAAGACAAT
CGAGACAAAGGTTGTGCAATGAGCCAGCTCCAAGGAAGAATGGAAATCCT
TGCAATGGTAAAAGCAGAGAAACGAAATCTTGTAGGTCAGGCGCTTGTTA
TAAGAGTCGTTATGATTGTGAATTTGATAATGATGGTTGGTGTTTATGGA
GATCACAGCACGGACATTGGAAAATCGTCTCTTCGAATTATAATGATGAA
ATTGTTGGTCCTAAAACAGATGTTTCATTTGGGATAGGACGTTACCTGAT
TCTTAAAGATGACCAAAAAGACTCATTAATACTGAAGGATTTACCCAAAA
ATCAAATCTGCTTCTCTTTTCACCTTCAAAAAACGAAGAATACAAAATTA
ATAGTTACGGGGCTTGATGCCAGTGGCAAACATATACTTTTTCAATCGCA
TCCTGGTGGTAAACCAATATCAGAATGGACGAATGTTAAAATTCCATTGA
TTGATGCAAGATTTATCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010890XLOC_010890Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019374-proteinTCONS_00019374-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019374-exon-sc0000326-1491911889:146173..146349TCONS_00019374-exon-sc0000326-1491911889:146173..146349Clytia hemisphaericaexon
TCONS_00019374-exon-sc0000326-1510915933:146173..146349TCONS_00019374-exon-sc0000326-1510915933:146173..146349Clytia hemisphaericaexon
TCONS_00019374-exon-sc0000326-1575043694:146173..146349TCONS_00019374-exon-sc0000326-1575043694:146173..146349Clytia hemisphaericaexon
TCONS_00019374-exon-sc0000326-1491911889:148063..148194TCONS_00019374-exon-sc0000326-1491911889:148063..148194Clytia hemisphaericaexon
TCONS_00019374-exon-sc0000326-1510915933:148063..148194TCONS_00019374-exon-sc0000326-1510915933:148063..148194Clytia hemisphaericaexon
TCONS_00019374-exon-sc0000326-1575043694:148063..148194TCONS_00019374-exon-sc0000326-1575043694:148063..148194Clytia hemisphaericaexon
TCONS_00019374-exon-sc0000326-1491911889:148885..149117TCONS_00019374-exon-sc0000326-1491911889:148885..149117Clytia hemisphaericaexon
TCONS_00019374-exon-sc0000326-1510915933:148885..149117TCONS_00019374-exon-sc0000326-1510915933:148885..149117Clytia hemisphaericaexon
TCONS_00019374-exon-sc0000326-1575043694:148885..149117TCONS_00019374-exon-sc0000326-1575043694:148885..149117Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000326supercontigsc0000326:146173..149117 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.143675	0	0.136974	0.128233	0.179558	0.222412	0	0.0709549	4.03881	2.64906	0	0.0649223	0.079979	0.163952	6.79525	11.8512	0.103009	0.301464	0.122156	0.111058	0	0	0.146087	0	0.118251	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
IPR000998MAM_dom
IPR013320ConA-like_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
Blast
[Close]
BLAST of TCONS_00019374 vs. Swiss-Prot (Human)
Match: TSP1 (Thrombospondin-1 OS=Homo sapiens GN=THBS1 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.752e-16
Identity = 32/55 (58.18%), Postives = 42/55 (76.36%), Query Frame = 3 
Query:    6 NGGWSRWSSWSACDVYCGNGRQSRQRLCNEPAPRKNGNPCNGKSRETKSCRSGAC 170
            +GGWS WS WS+C V CG+G  +R RLCN P+P+ NG PC G++RETK+C+  AC
Sbjct:  435 DGGWSHWSPWSSCSVTCGDGVITRIRLCNSPSPQMNGKPCEGEARETKACKKDAC 489
The following BLAST results are available for this feature:
BLAST of TCONS_00019374 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TSP12.752e-1658.18Thrombospondin-1 OS=Homo sapiens GN=THBS1 PE=1 SV=... [more]
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