TCONS_00018673-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00018673-protein
Unique Name	TCONS_00018673-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	344

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00018673-protein ID=TCONS_00018673-protein|Name=TCONS_00018673-protein|organism=Clytia hemisphaerica|type=polypeptide|length=344bp
MQKLIKDLGMNKPGGFSTENVMKVLLLGLEHPHNDVRDAALSCIVDVYKI
VKEPLKSFFPPDDANTRKNPLYTKLFDSLDRADGKMTESEKKAATKKKKE
DAEKSKMEEVKALQAQLQEMRSLAKAQVQENENEANPSTREENNNTKNNN
GTKATKTDLDKNAKKKSLVASRISIRPISQRHKEEVLEEDMCIFCGERNE
KFSNDGVLDIHYWKSCPLLQRCAGCSQVVEICSLSDHLLNECDVQQNYTQ
CNKCGLAILKTQAQQHKKSPTCKVPSNSSKLTCPLCFIHVQDTEEHWKTH
LVEKCKVNLQRLKKGVFQIVFPFERFDITKTKCQMLILHPQSLT

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_010446	XLOC_010446	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00018673	TCONS_00018673	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011989	ARM-like

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 96..134
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 121..166
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..109
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 3..100 e-value: 0.039 score: 12.5

Blast

[Close]

BLAST of TCONS_00018673-protein vs. Swiss-Prot (Human)
Match: CE104 (Centrosomal protein of 104 kDa OS=Homo sapiens GN=CEP104 PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 7.618e-55
Identity = 116/315 (36.83%), Postives = 178/315 (56.51%), Query Frame = 0

Query:    1 MQKLIKDLGMNKPGGFSTENVMKVLLLGLEHPHNDVRDAALSCIVDVYKIVKEPLKSFFPPDDANTRKNPLYTKLFDSLDRADGKMTESEKKAATKKKKEDAEKSKMEEVKALQAQLQEMRSLAKAQVQENENEANPSTREENNNTKNNNGTKATKTDLDKNAKKKSLVASRISIRPISQRHKEEVLEEDMCIFCGERNEKFSNDGVLDIHYWKSCPLLQRCAGCSQVVEICSLSDHLLNECDVQQNYTQCNKCGLAILKTQAQQHKKSPTCKVPSNSSKLT--CPLCFIHVQDTEEHWKTHLV--EKCKVNLQR 311
            + +L+KDLG     GF+ +NVMK  +  LEH   +VR+ A+  I+D+Y+  +  +  + PPDD+NTR+N LY  +F+   + DG+ T++E +A  K   E+AEK K EE+KALQ QL  ++ + +A+VQE E++A    + +N + +      A    +                        +E   +++CIFCGER+E F+ +G LD+HYWK C +L RC  C QVVEI SL++HLL ECD +  + +C +C  A+ K +  +H K   C  P+   KL   CPLC  +    EE WK HL+    C +NL++
Sbjct:  591 LARLLKDLGTGS-SGFTIDNVMKFSVSALEHRVYEVRETAVRIILDMYRQHQASILEYLPPDDSNTRRNILYKTIFEGFAKIDGRATDAEMRARRKAATEEAEKQKKEEIKALQGQLAALKEI-QAEVQEKESDA---VKPKNQDIQGGKAAPAEALGI-----------------------PDEHYLDNLCIFCGERSESFTEEG-LDLHYWKHCLMLTRCDHCKQVVEISSLTEHLLTECDKKDGFGKCYRCSEAVFKEELPRHIKHKDCN-PAKPEKLANRCPLCHENFSPGEEAWKAHLMGPAGCTMNLRK 875

The following BLAST results are available for this feature:

BLAST of TCONS_00018673-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00018673-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CE104	7.618e-55	36.83	Centrosomal protein of 104 kDa OS=Homo sapiens GN=...	[more]

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TCONS_00018673-protein (polypeptide) - C. hemisphaerica